Wall clock time and date at job start Tue Mar 31 2020 13:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99840 * 2 1 4 4 H 1.48501 * 109.46699 * 269.99771 * 3 2 1 5 5 H 1.48493 * 109.47375 * 29.99305 * 3 2 1 6 6 H 1.48501 * 109.47234 * 149.99782 * 3 2 1 7 7 C 1.37878 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00137 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47595 * 179.97438 * 9 7 2 11 11 N 1.46492 * 109.47571 * 180.02562 * 10 9 7 12 12 C 1.34779 * 120.00442 * 179.97438 * 11 10 9 13 13 O 1.21589 * 119.99778 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00296 * 179.97438 * 12 11 10 15 15 C 1.47419 * 125.64428 * 359.69132 * 14 12 11 16 16 C 1.54912 * 104.82976 * 156.13615 * 15 14 12 17 17 C 1.55162 * 101.58055 * 37.00778 * 16 15 14 18 18 O 1.42904 * 110.71560 * 82.86277 * 17 16 15 19 19 C 1.50694 * 110.87147 * 206.06150 * 17 16 15 20 20 C 1.38249 * 119.97285 * 58.65088 * 19 17 16 21 21 C 1.38198 * 120.02523 * 179.76370 * 20 19 17 22 22 C 1.38465 * 119.97567 * 0.50708 * 21 20 19 23 23 F 1.35096 * 120.02766 * 179.76717 * 22 21 20 24 24 C 1.38468 * 119.94473 * 359.74573 * 22 21 20 25 25 C 1.38194 * 119.97590 * 0.02562 * 24 22 21 26 26 C 1.47022 * 125.64832 * 180.02562 * 14 12 11 27 27 H 0.97002 * 120.00248 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46882 * 59.99469 * 9 7 2 29 29 H 1.09003 * 109.47121 * 299.99798 * 9 7 2 30 30 H 1.08998 * 109.46913 * 59.99652 * 10 9 7 31 31 H 1.09003 * 109.46756 * 300.00064 * 10 9 7 32 32 H 0.97003 * 119.99953 * 359.97438 * 11 10 9 33 33 H 1.09003 * 110.37199 * 274.97187 * 15 14 12 34 34 H 1.09000 * 110.36840 * 37.30393 * 15 14 12 35 35 H 1.08998 * 111.00948 * 278.93594 * 16 15 14 36 36 H 1.08997 * 111.04113 * 155.09577 * 16 15 14 37 37 H 0.96698 * 113.99497 * 185.02435 * 18 17 16 38 38 H 1.07996 * 119.98959 * 0.02562 * 20 19 17 39 39 H 1.07997 * 120.01418 * 180.25357 * 21 20 19 40 40 H 1.08002 * 120.01147 * 180.02562 * 24 22 21 41 41 H 1.07995 * 119.98883 * 180.02562 * 25 24 22 42 42 H 1.09001 * 109.88145 * 300.21243 * 26 14 12 43 43 H 1.08998 * 109.87838 * 61.22210 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5130 -4.9307 -0.0001 12 6 2.1868 -6.0980 -0.0007 13 8 3.4027 -6.0979 -0.0003 14 7 1.5130 -7.2652 -0.0008 15 6 0.0460 -7.4103 0.0063 16 6 -0.2170 -8.8103 -0.6024 17 6 0.9659 -9.6296 -0.0217 18 8 0.6671 -10.0808 1.3010 19 6 1.3030 -10.7941 -0.9167 20 6 1.6623 -10.5721 -2.2331 21 6 1.9764 -11.6389 -3.0535 22 6 1.9211 -12.9313 -2.5596 23 9 2.2234 -13.9752 -3.3620 24 6 1.5561 -13.1527 -1.2424 25 6 1.2470 -12.0841 -0.4225 26 6 2.1193 -8.6046 -0.0009 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8896 29 1 0.6242 -2.5568 0.8903 30 1 2.8720 -3.6042 0.8905 31 1 2.8720 -3.6042 -0.8895 32 1 0.5429 -4.9308 0.0000 33 1 -0.3352 -7.3625 1.0264 34 1 -0.4147 -6.6369 -0.6083 35 1 -0.1724 -8.7778 -1.6910 36 1 -1.1727 -9.2108 -0.2645 37 1 1.4023 -10.5318 1.7381 38 1 1.7015 -9.5643 -2.6193 39 1 2.2610 -11.4650 -4.0807 40 1 1.5130 -14.1603 -0.8558 41 1 0.9627 -12.2565 0.6050 42 1 2.7420 -8.7295 -0.8867 43 1 2.7217 -8.7388 0.8975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784443029.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:40 Heat of formation + Delta-G solvation = -120.561419 kcal Electronic energy + Delta-G solvation = -26344.978996 eV Core-core repulsion = 22303.489073 eV Total energy + Delta-G solvation = -4041.489923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.92753 -41.75029 -40.50311 -38.71719 -36.66262 -36.41576 -34.81073 -32.99579 -32.00989 -31.50118 -30.93367 -28.93590 -26.70288 -24.83142 -24.08483 -23.43927 -22.88234 -21.42298 -21.13247 -19.27140 -19.07164 -18.46795 -18.31000 -17.29697 -17.02405 -16.93138 -16.62060 -16.53236 -16.21095 -15.74846 -15.49778 -15.31744 -14.99546 -14.82403 -14.47357 -14.30915 -14.13691 -14.03201 -13.79539 -13.68855 -13.22994 -13.10159 -12.92391 -12.86633 -12.51926 -12.46411 -12.23897 -12.00063 -11.94732 -11.67656 -11.50557 -11.33415 -11.17325 -10.59983 -10.21713 -10.09817 -9.64034 -9.49267 -8.23369 -6.33509 0.03208 0.23892 1.42275 1.43122 1.52615 1.57302 2.08809 2.41270 2.47954 3.00319 3.11392 3.12716 3.24895 3.37603 3.43854 3.62534 3.80793 3.94081 4.18037 4.23377 4.29602 4.44497 4.45124 4.51024 4.57106 4.60369 4.74101 4.85666 4.91373 4.92215 4.95505 5.06275 5.14059 5.21363 5.23396 5.30152 5.43943 5.51130 5.59132 5.79399 5.85699 5.98798 6.17546 6.70144 6.79285 6.94836 7.35576 7.51543 8.88495 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029642 B = 0.002081 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.364658 B =13450.488710 C =13747.490384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.160 3.840 11 N -0.730 5.730 12 C 0.714 3.286 13 O -0.638 6.638 14 N -0.634 5.634 15 C 0.094 3.906 16 C -0.107 4.107 17 C 0.180 3.820 18 O -0.546 6.546 19 C -0.118 4.118 20 C -0.083 4.083 21 C -0.157 4.157 22 C 0.081 3.919 23 F -0.150 7.150 24 C -0.152 4.152 25 C -0.073 4.073 26 C 0.103 3.897 27 H 0.266 0.734 28 H 0.009 0.991 29 H 0.008 0.992 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.405 0.595 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.396 0.604 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.154 0.846 41 H 0.161 0.839 42 H 0.071 0.929 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.475 -28.773 -1.981 28.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.036 3.964 11 N -0.385 5.385 12 C 0.416 3.584 13 O -0.521 6.521 14 N -0.372 5.372 15 C -0.028 4.028 16 C -0.144 4.144 17 C 0.138 3.862 18 O -0.354 6.354 19 C -0.119 4.119 20 C -0.101 4.101 21 C -0.176 4.176 22 C 0.061 3.939 23 F -0.128 7.128 24 C -0.171 4.171 25 C -0.090 4.090 26 C -0.020 4.020 27 H 0.075 0.925 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.241 0.759 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.132 0.868 37 H 0.247 0.753 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.172 0.828 41 H 0.179 0.821 42 H 0.089 0.911 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.259 -28.343 -2.133 28.512 hybrid contribution 0.657 0.635 -0.140 0.924 sum -1.603 -27.708 -2.273 27.847 Atomic orbital electron populations 1.70053 1.07486 1.27988 1.50975 1.25867 0.95825 1.03065 0.94443 0.85440 0.78604 0.78450 0.78520 1.19742 1.20519 1.19131 1.21449 0.93596 0.91843 1.51533 0.92300 1.19117 0.94188 0.91572 0.96371 1.21103 0.94672 0.80957 0.99652 1.45235 1.10345 1.04279 1.78651 1.15642 0.84495 0.80366 0.77909 1.90861 1.13522 1.86892 1.60777 1.47435 1.08050 1.03731 1.77970 1.22547 0.79077 0.98968 1.02220 1.22913 0.98556 0.91688 1.01253 1.20571 0.93764 0.89098 0.82790 1.86556 1.43579 1.78589 1.26711 1.20224 1.01928 0.94927 0.94789 1.20976 0.96889 0.99399 0.92852 1.21301 1.03261 0.90868 1.02130 1.18061 1.01957 0.84089 0.89744 1.91484 1.90941 1.56977 1.73443 1.21389 1.01971 1.01872 0.91840 1.21079 0.96474 0.90191 1.01302 1.22644 0.96042 0.80692 1.02650 0.92536 0.97223 0.97330 0.93873 0.93697 0.75915 0.90402 0.89565 0.87959 0.86848 0.75305 0.84348 0.83656 0.82806 0.82109 0.91075 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.08 13.29 21.45 0.28 -53.79 16 2 C 0.01 0.38 5.46 84.66 0.46 0.84 16 3 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -30.59 9.11 25.60 0.23 -30.36 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.27 5.09 29.85 0.15 1.42 16 10 C 0.16 7.09 5.61 86.38 0.48 7.58 16 11 N -0.73 -26.66 5.52 -478.55 -2.64 -29.30 16 12 C 0.71 25.91 8.49 179.05 1.52 27.43 16 13 O -0.64 -28.52 16.67 -4.00 -0.07 -28.59 16 14 N -0.63 -16.49 3.33 -829.77 -2.76 -19.25 16 15 C 0.09 1.73 6.57 86.86 0.57 2.30 16 16 C -0.11 -1.41 6.21 31.99 0.20 -1.21 16 17 C 0.18 2.49 1.10 -10.35 -0.01 2.48 16 18 O -0.55 -6.73 12.03 -148.98 -1.79 -8.52 16 19 C -0.12 -1.48 4.95 -19.86 -0.10 -1.57 16 20 C -0.08 -1.13 8.11 22.26 0.18 -0.95 16 21 C -0.16 -2.23 10.03 22.31 0.22 -2.01 16 22 C 0.08 1.22 7.30 22.38 0.16 1.39 16 23 F -0.15 -2.65 17.27 44.97 0.78 -1.87 16 24 C -0.15 -1.76 10.03 22.31 0.22 -1.54 16 25 C -0.07 -0.74 9.27 22.26 0.21 -0.53 16 26 C 0.10 2.15 6.10 86.73 0.53 2.68 16 27 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.41 12.75 6.95 -92.71 -0.64 12.10 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.49 7.30 -2.39 -0.02 1.47 16 35 H 0.10 1.18 7.12 -2.39 -0.02 1.16 16 36 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.40 2.27 8.39 -74.06 -0.62 1.65 16 38 H 0.14 1.79 7.30 -2.91 -0.02 1.77 16 39 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 40 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.16 0.90 6.78 -2.91 -0.02 0.88 16 42 H 0.07 1.56 6.76 -2.39 -0.02 1.54 16 43 H 0.07 1.47 8.06 -2.39 -0.02 1.45 16 Total: -1.00 -72.73 362.05 0.66 -72.08 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -0.21 Total: 15.63 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 5.04 Total: 7.95 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -5.11 Total: -102.34 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -1.86 Total: -37.11 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -72.73 0.66 -72.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784443029.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.482 kcal (2) G-P(sol) polarization free energy of solvation -72.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds