Wall clock time and date at job start Tue Mar 31 2020 13:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00335 * 2 1 4 4 H 1.48500 * 109.46816 * 239.99769 * 3 2 1 5 5 H 1.48503 * 109.46752 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47378 * 119.99820 * 3 2 1 7 7 C 1.37882 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00348 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99805 * 0.27209 * 7 2 1 10 10 C 1.52997 * 109.47206 * 179.72718 * 9 7 2 11 11 N 1.46500 * 109.46895 * 180.02562 * 10 9 7 12 12 C 1.34782 * 119.99886 * 179.97438 * 11 10 9 13 13 O 1.21592 * 119.99966 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00253 * 179.97438 * 12 11 10 15 15 C 1.47021 * 125.64543 * 359.69590 * 14 12 11 16 16 C 1.54336 * 107.26421 * 178.84696 * 15 14 12 17 17 C 1.55157 * 103.02033 * 338.13883 * 16 15 14 18 18 O 1.42901 * 111.00660 * 277.23462 * 17 16 15 19 19 C 1.50706 * 111.03782 * 153.39200 * 17 16 15 20 20 C 1.38241 * 119.96957 * 121.75630 * 19 17 16 21 21 C 1.38198 * 120.02239 * 179.76873 * 20 19 17 22 22 C 1.38461 * 119.97294 * 0.51360 * 21 20 19 23 23 F 1.35106 * 120.02526 * 179.76515 * 22 21 20 24 24 C 1.38458 * 119.95108 * 359.74106 * 22 21 20 25 25 C 1.38202 * 119.97058 * 0.02562 * 24 22 21 26 26 C 1.47419 * 125.64885 * 180.02562 * 14 12 11 27 27 H 0.97001 * 119.99357 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47154 * 299.73109 * 9 7 2 29 29 H 1.09003 * 109.46911 * 59.72760 * 9 7 2 30 30 H 1.08998 * 109.47383 * 300.00250 * 10 9 7 31 31 H 1.09003 * 109.47152 * 60.00189 * 10 9 7 32 32 H 0.96997 * 120.00315 * 0.02562 * 11 10 9 33 33 H 1.08999 * 109.88226 * 298.39189 * 15 14 12 34 34 H 1.09001 * 109.88160 * 59.56092 * 15 14 12 35 35 H 1.08997 * 110.84963 * 219.67194 * 16 15 14 36 36 H 1.08998 * 110.51131 * 96.44839 * 16 15 14 37 37 H 0.96699 * 113.99786 * 173.65246 * 18 17 16 38 38 H 1.08004 * 119.98908 * 0.02743 * 20 19 17 39 39 H 1.07995 * 120.01499 * 180.25446 * 21 20 19 40 40 H 1.07997 * 120.01421 * 179.97438 * 24 22 21 41 41 H 1.08000 * 119.98351 * 180.02562 * 25 24 22 42 42 H 1.09004 * 110.36775 * 322.92963 * 26 14 12 43 43 H 1.09004 * 110.36929 * 85.25336 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 -0.0051 10 6 2.2452 -3.6621 -0.0101 11 7 1.5126 -4.9308 -0.0162 12 6 2.1865 -6.0980 -0.0218 13 8 3.4024 -6.0981 -0.0224 14 7 1.5126 -7.2652 -0.0269 15 6 0.0495 -7.4099 -0.0206 16 6 -0.2615 -8.9211 -0.0596 17 6 1.0383 -9.5304 -0.6485 18 8 1.0434 -9.4453 -2.0750 19 6 1.2216 -10.9557 -0.1946 20 6 1.3212 -11.9704 -1.1281 21 6 1.4941 -13.2772 -0.7132 22 6 1.5569 -13.5713 0.6384 23 9 1.7212 -14.8491 1.0453 24 6 1.4518 -12.5548 1.5726 25 6 1.2838 -11.2481 1.1551 26 6 2.1204 -8.6082 -0.0328 27 1 -0.4849 0.8401 -0.0004 28 1 0.6243 -2.5607 0.8846 29 1 0.6244 -2.5531 -0.8953 30 1 2.8719 -3.6006 -0.8998 31 1 2.8719 -3.6082 0.8802 32 1 0.5427 -4.9308 -0.0169 33 1 -0.3628 -6.9679 0.8865 34 1 -0.3749 -6.9232 -0.8987 35 1 -1.1122 -9.1254 -0.7098 36 1 -0.4436 -9.2996 0.9461 37 1 1.8748 -9.7239 -2.4826 38 1 1.2680 -11.7412 -2.1822 39 1 1.5760 -14.0693 -1.4427 40 1 1.5003 -12.7831 2.6270 41 1 1.2022 -10.4550 1.8837 42 1 3.0197 -8.6150 -0.6489 43 1 2.3540 -8.9235 0.9842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784443030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:43 Heat of formation + Delta-G solvation = -97.973070 kcal Electronic energy + Delta-G solvation = -26303.709710 eV Core-core repulsion = 22263.199292 eV Total energy + Delta-G solvation = -4040.510419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.30512 -40.85384 -39.41959 -37.86774 -35.60033 -34.80240 -32.87044 -32.19159 -31.47715 -30.30789 -29.59522 -27.96929 -24.96803 -23.75763 -23.41807 -22.76017 -21.03164 -20.74447 -19.78868 -18.49429 -17.96751 -17.62098 -16.68762 -16.38361 -16.12149 -15.99518 -15.56547 -15.27319 -14.83427 -14.68184 -14.45516 -14.35358 -14.01004 -13.65907 -13.51547 -13.27707 -13.20159 -12.99969 -12.79701 -12.38541 -12.25078 -12.12401 -11.74617 -11.45835 -11.33201 -11.17874 -11.00914 -10.64552 -10.61419 -10.30593 -9.95914 -9.59736 -9.55642 -9.27225 -9.03504 -8.73123 -8.44890 -8.19262 -6.08188 -4.10819 0.59676 0.74410 2.77982 3.02574 3.32208 3.35831 3.39458 3.51567 3.67779 3.80154 4.01559 4.16203 4.17895 4.35369 4.41611 4.42627 4.57446 4.77158 4.83177 4.90665 5.06349 5.28784 5.31767 5.38727 5.43305 5.48516 5.51312 5.59301 5.65982 5.74142 5.75629 5.96712 6.11779 6.37579 6.39533 6.40161 6.77429 6.99942 7.18912 7.25804 7.56639 7.64059 7.90707 8.25323 8.37246 8.92251 8.97799 9.53702 11.03410 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.039153 B = 0.001996 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.964337 B =14022.014664 C =14121.955416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.140 3.860 11 N -0.734 5.734 12 C 0.718 3.282 13 O -0.596 6.596 14 N -0.638 5.638 15 C 0.101 3.899 16 C -0.110 4.110 17 C 0.160 3.840 18 O -0.537 6.537 19 C -0.114 4.114 20 C -0.077 4.077 21 C -0.152 4.152 22 C 0.098 3.902 23 F -0.140 7.140 24 C -0.150 4.150 25 C -0.079 4.079 26 C 0.109 3.891 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.393 0.607 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.381 0.619 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.083 0.917 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.073 -28.364 0.073 28.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.388 5.388 12 C 0.420 3.580 13 O -0.474 6.474 14 N -0.377 5.377 15 C -0.022 4.022 16 C -0.148 4.148 17 C 0.117 3.883 18 O -0.343 6.343 19 C -0.115 4.115 20 C -0.095 4.095 21 C -0.170 4.170 22 C 0.079 3.921 23 F -0.119 7.119 24 C -0.169 4.169 25 C -0.097 4.097 26 C -0.015 4.015 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.227 0.773 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.230 0.770 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.101 0.899 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.866 -27.920 0.189 27.983 hybrid contribution 0.479 0.414 0.016 0.633 sum -1.387 -27.506 0.205 27.542 Atomic orbital electron populations 1.69948 1.06075 1.26949 1.50347 1.24999 0.94908 0.99396 0.95015 0.86561 0.79500 0.82623 0.78778 1.20117 1.21269 1.20114 1.21011 0.93233 0.90342 1.51387 0.92261 1.19317 0.94238 0.91029 0.97806 1.21619 0.95680 0.80323 1.00682 1.45536 1.09925 1.05082 1.78212 1.15551 0.84945 0.79479 0.78004 1.90894 1.11514 1.86038 1.58996 1.47411 1.06194 1.04395 1.79743 1.21988 0.81589 0.96431 1.02220 1.22720 0.96529 0.93884 1.01651 1.20976 0.96409 0.89150 0.81721 1.86571 1.41097 1.89482 1.17199 1.20248 1.01971 0.95356 0.93896 1.20874 0.97127 0.91050 1.00468 1.21161 1.03589 0.98138 0.94151 1.17796 1.02265 0.78896 0.93171 1.91513 1.92895 1.36227 1.91246 1.21156 1.03428 0.92300 1.00024 1.20887 0.97556 0.96009 0.95261 1.22661 0.96178 0.81389 1.01266 0.92813 0.95987 0.95961 0.92743 0.92731 0.77321 0.91102 0.90961 0.88638 0.88982 0.77048 0.84254 0.84538 0.84425 0.84534 0.89902 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C 0.14 3.05 5.61 -4.04 -0.02 3.03 16 11 N -0.73 -13.50 5.52 -65.22 -0.36 -13.86 16 12 C 0.72 13.11 8.49 -86.91 -0.74 12.38 16 13 O -0.60 -13.13 16.60 5.28 0.09 -13.04 16 14 N -0.64 -8.60 3.33 -176.21 -0.59 -9.18 16 15 C 0.10 1.02 6.15 -3.06 -0.02 1.01 16 16 C -0.11 -0.84 6.10 -24.89 -0.15 -0.99 16 17 C 0.16 1.30 1.16 -89.61 -0.10 1.19 16 18 O -0.54 -4.62 12.10 -35.23 -0.43 -5.04 16 19 C -0.11 -0.80 5.00 -104.62 -0.52 -1.33 16 20 C -0.08 -0.50 9.29 -39.59 -0.37 -0.87 16 21 C -0.15 -1.02 10.03 -39.51 -0.40 -1.42 16 22 C 0.10 0.76 7.30 -39.42 -0.29 0.48 16 23 F -0.14 -1.24 17.27 2.25 0.04 -1.20 16 24 C -0.15 -1.03 10.03 -39.51 -0.40 -1.43 16 25 C -0.08 -0.53 8.28 -39.59 -0.33 -0.85 16 26 C 0.11 1.17 6.05 -2.52 -0.02 1.16 16 27 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.39 6.36 7.46 -40.82 -0.30 6.05 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.55 7.06 -51.93 -0.37 0.18 16 37 H 0.38 2.12 8.47 45.56 0.39 2.51 16 38 H 0.14 0.69 6.81 -52.48 -0.36 0.33 16 39 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.14 0.74 7.01 -52.49 -0.37 0.37 16 42 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 43 H 0.07 0.72 6.77 -51.93 -0.35 0.37 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -34.17 362.88 -9.09 -43.26 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.13 Total: 3.32 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -3.90 Total: -0.74 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.21 Total: -48.45 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.34 Total: -18.08 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.17 -9.09 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784443030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.717 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds