Wall clock time and date at job start Tue Mar 31 2020 13:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00335 * 2 1 4 4 H 1.48500 * 109.46816 * 239.99769 * 3 2 1 5 5 H 1.48503 * 109.46752 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47378 * 119.99820 * 3 2 1 7 7 C 1.37882 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00348 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99805 * 0.27209 * 7 2 1 10 10 C 1.52997 * 109.47206 * 179.72718 * 9 7 2 11 11 N 1.46500 * 109.46895 * 180.02562 * 10 9 7 12 12 C 1.34782 * 119.99886 * 179.97438 * 11 10 9 13 13 O 1.21592 * 119.99966 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00253 * 179.97438 * 12 11 10 15 15 C 1.47021 * 125.64543 * 359.69590 * 14 12 11 16 16 C 1.54336 * 107.26421 * 178.84696 * 15 14 12 17 17 C 1.55157 * 103.02033 * 338.13883 * 16 15 14 18 18 O 1.42901 * 111.00660 * 277.23462 * 17 16 15 19 19 C 1.50706 * 111.03782 * 153.39200 * 17 16 15 20 20 C 1.38241 * 119.96957 * 121.75630 * 19 17 16 21 21 C 1.38198 * 120.02239 * 179.76873 * 20 19 17 22 22 C 1.38461 * 119.97294 * 0.51360 * 21 20 19 23 23 F 1.35106 * 120.02526 * 179.76515 * 22 21 20 24 24 C 1.38458 * 119.95108 * 359.74106 * 22 21 20 25 25 C 1.38202 * 119.97058 * 0.02562 * 24 22 21 26 26 C 1.47419 * 125.64885 * 180.02562 * 14 12 11 27 27 H 0.97001 * 119.99357 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47154 * 299.73109 * 9 7 2 29 29 H 1.09003 * 109.46911 * 59.72760 * 9 7 2 30 30 H 1.08998 * 109.47383 * 300.00250 * 10 9 7 31 31 H 1.09003 * 109.47152 * 60.00189 * 10 9 7 32 32 H 0.96997 * 120.00315 * 0.02562 * 11 10 9 33 33 H 1.08999 * 109.88226 * 298.39189 * 15 14 12 34 34 H 1.09001 * 109.88160 * 59.56092 * 15 14 12 35 35 H 1.08997 * 110.84963 * 219.67194 * 16 15 14 36 36 H 1.08998 * 110.51131 * 96.44839 * 16 15 14 37 37 H 0.96699 * 113.99786 * 173.65246 * 18 17 16 38 38 H 1.08004 * 119.98908 * 0.02743 * 20 19 17 39 39 H 1.07995 * 120.01499 * 180.25446 * 21 20 19 40 40 H 1.07997 * 120.01421 * 179.97438 * 24 22 21 41 41 H 1.08000 * 119.98351 * 180.02562 * 25 24 22 42 42 H 1.09004 * 110.36775 * 322.92963 * 26 14 12 43 43 H 1.09004 * 110.36929 * 85.25336 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 -0.0051 10 6 2.2452 -3.6621 -0.0101 11 7 1.5126 -4.9308 -0.0162 12 6 2.1865 -6.0980 -0.0218 13 8 3.4024 -6.0981 -0.0224 14 7 1.5126 -7.2652 -0.0269 15 6 0.0495 -7.4099 -0.0206 16 6 -0.2615 -8.9211 -0.0596 17 6 1.0383 -9.5304 -0.6485 18 8 1.0434 -9.4453 -2.0750 19 6 1.2216 -10.9557 -0.1946 20 6 1.3212 -11.9704 -1.1281 21 6 1.4941 -13.2772 -0.7132 22 6 1.5569 -13.5713 0.6384 23 9 1.7212 -14.8491 1.0453 24 6 1.4518 -12.5548 1.5726 25 6 1.2838 -11.2481 1.1551 26 6 2.1204 -8.6082 -0.0328 27 1 -0.4849 0.8401 -0.0004 28 1 0.6243 -2.5607 0.8846 29 1 0.6244 -2.5531 -0.8953 30 1 2.8719 -3.6006 -0.8998 31 1 2.8719 -3.6082 0.8802 32 1 0.5427 -4.9308 -0.0169 33 1 -0.3628 -6.9679 0.8865 34 1 -0.3749 -6.9232 -0.8987 35 1 -1.1122 -9.1254 -0.7098 36 1 -0.4436 -9.2996 0.9461 37 1 1.8748 -9.7239 -2.4826 38 1 1.2680 -11.7412 -2.1822 39 1 1.5760 -14.0693 -1.4427 40 1 1.5003 -12.7831 2.6270 41 1 1.2022 -10.4550 1.8837 42 1 3.0197 -8.6150 -0.6489 43 1 2.3540 -8.9235 0.9842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784443030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:43 Heat of formation + Delta-G solvation = -121.423295 kcal Electronic energy + Delta-G solvation = -26304.726588 eV Core-core repulsion = 22263.199292 eV Total energy + Delta-G solvation = -4041.527297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.91029 -41.71661 -40.47934 -38.70274 -36.63945 -36.39957 -34.80493 -33.04729 -31.99396 -31.49821 -30.90931 -28.92563 -26.70221 -24.81067 -24.04833 -23.42888 -22.86781 -21.43140 -21.11288 -19.25665 -19.01762 -18.45718 -18.25963 -17.28310 -17.16723 -16.87424 -16.60443 -16.52712 -16.18912 -15.79997 -15.48356 -15.24200 -15.05322 -14.74745 -14.45545 -14.31833 -14.11484 -13.99083 -13.80219 -13.65730 -13.22887 -13.13011 -12.92049 -12.86525 -12.52834 -12.43598 -12.22849 -12.01501 -11.91819 -11.67724 -11.51504 -11.32737 -11.18549 -10.59370 -10.18780 -10.08001 -9.61503 -9.46277 -8.23070 -6.33426 0.05056 0.25820 1.42373 1.45191 1.52133 1.58419 2.09761 2.41503 2.49613 3.01484 3.11531 3.13092 3.26132 3.38819 3.46288 3.65428 3.84717 3.95806 4.19723 4.22060 4.30893 4.42394 4.45777 4.50946 4.57812 4.63396 4.76656 4.85466 4.91163 4.94779 4.96689 5.06183 5.15788 5.22056 5.26215 5.30746 5.45425 5.51350 5.58958 5.79429 5.87348 6.00603 6.17549 6.67647 6.79124 6.96190 7.35571 7.52384 8.88592 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.039153 B = 0.001996 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.964337 B =14022.014664 C =14121.955416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.160 3.840 11 N -0.731 5.731 12 C 0.714 3.286 13 O -0.639 6.639 14 N -0.632 5.632 15 C 0.093 3.907 16 C -0.104 4.104 17 C 0.173 3.827 18 O -0.550 6.550 19 C -0.116 4.116 20 C -0.077 4.077 21 C -0.154 4.154 22 C 0.079 3.921 23 F -0.150 7.150 24 C -0.154 4.154 25 C -0.080 4.080 26 C 0.102 3.898 27 H 0.266 0.734 28 H 0.009 0.991 29 H 0.007 0.993 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.405 0.595 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.393 0.607 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.069 0.931 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 -29.110 0.176 29.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.036 3.964 11 N -0.385 5.385 12 C 0.416 3.584 13 O -0.521 6.521 14 N -0.370 5.370 15 C -0.029 4.029 16 C -0.141 4.141 17 C 0.131 3.869 18 O -0.358 6.358 19 C -0.117 4.117 20 C -0.094 4.094 21 C -0.173 4.173 22 C 0.060 3.940 23 F -0.129 7.129 24 C -0.173 4.173 25 C -0.098 4.098 26 C -0.022 4.022 27 H 0.075 0.925 28 H 0.028 0.972 29 H 0.026 0.974 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.240 0.760 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.243 0.757 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.168 0.832 42 H 0.087 0.913 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.321 -28.727 0.286 28.822 hybrid contribution 0.582 0.560 -0.034 0.809 sum -1.738 -28.167 0.252 28.221 Atomic orbital electron populations 1.70053 1.07501 1.28052 1.50881 1.25878 0.95833 1.03084 0.94409 0.85489 0.78290 0.78088 0.79117 1.19403 1.20563 1.19317 1.21426 0.93606 0.91842 1.51685 0.92265 1.19113 0.94182 0.91598 0.96321 1.21101 0.94662 0.80988 0.99626 1.45228 1.10309 1.04343 1.78629 1.15649 0.84513 0.80366 0.77865 1.90856 1.13483 1.86866 1.60922 1.47394 1.07880 1.03855 1.77844 1.22255 0.79267 0.98687 1.02711 1.22787 0.96468 0.91654 1.03209 1.20810 0.95455 0.89168 0.81465 1.86548 1.42168 1.89660 1.17405 1.20163 1.02601 0.94645 0.94264 1.21042 0.96490 0.90738 1.01172 1.21352 1.03115 0.98720 0.94106 1.18077 1.03181 0.78749 0.93959 1.91487 1.93102 1.36921 1.91393 1.21336 1.03048 0.92207 1.00661 1.21044 0.97128 0.96256 0.95390 1.22928 0.96662 0.80469 1.02110 0.92532 0.97243 0.97420 0.93914 0.93675 0.75993 0.89847 0.91352 0.87623 0.86780 0.75657 0.82828 0.83197 0.83204 0.83201 0.91298 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.26 13.29 21.45 0.28 -53.98 16 2 C 0.01 0.38 5.46 84.66 0.46 0.85 16 3 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.55 -30.79 9.11 25.60 0.23 -30.56 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.30 5.09 29.85 0.15 1.45 16 10 C 0.16 7.15 5.61 86.38 0.48 7.64 16 11 N -0.73 -27.02 5.52 -478.53 -2.64 -29.66 16 12 C 0.71 26.09 8.49 179.05 1.52 27.61 16 13 O -0.64 -28.59 16.60 -4.00 -0.07 -28.66 16 14 N -0.63 -16.44 3.33 -829.68 -2.76 -19.20 16 15 C 0.09 1.72 6.15 86.73 0.53 2.25 16 16 C -0.10 -1.30 6.10 31.79 0.19 -1.11 16 17 C 0.17 2.45 1.16 -10.14 -0.01 2.44 16 18 O -0.55 -8.38 12.10 -148.98 -1.80 -10.19 16 19 C -0.12 -1.37 5.00 -19.86 -0.10 -1.47 16 20 C -0.08 -0.82 9.29 22.26 0.21 -0.62 16 21 C -0.15 -1.81 10.03 22.31 0.22 -1.59 16 22 C 0.08 1.13 7.30 22.38 0.16 1.30 16 23 F -0.15 -2.54 17.27 44.97 0.78 -1.76 16 24 C -0.15 -1.85 10.03 22.31 0.22 -1.62 16 25 C -0.08 -0.88 8.28 22.26 0.18 -0.70 16 26 C 0.10 2.05 6.05 86.87 0.53 2.58 16 27 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.40 13.01 7.46 -92.71 -0.69 12.32 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.11 0.95 7.06 -2.39 -0.02 0.94 16 37 H 0.39 3.74 8.47 -74.06 -0.63 3.11 16 38 H 0.15 1.15 6.81 -2.91 -0.02 1.13 16 39 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 40 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.15 1.20 7.01 -2.91 -0.02 1.18 16 42 H 0.07 1.60 8.04 -2.38 -0.02 1.58 16 43 H 0.09 1.54 6.77 -2.38 -0.02 1.52 16 Total: -1.00 -73.37 362.88 0.55 -72.82 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -0.27 Total: 16.44 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 5.00 Total: 8.45 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -5.11 Total: -102.84 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.87 Total: -38.84 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -73.37 0.55 -72.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784443030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.605 kcal (2) G-P(sol) polarization free energy of solvation -73.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds