Wall clock time and date at job start Tue Mar 31 2020 13:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86806 * 119.99434 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99464 * 3 2 1 5 5 H 1.48497 * 109.47110 * 29.99866 * 3 2 1 6 6 H 1.48504 * 109.46974 * 149.99705 * 3 2 1 7 7 C 1.38646 * 120.00577 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99982 * 359.97438 * 7 2 1 9 9 O 1.34839 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.35752 * 116.99404 * 185.05644 * 9 7 2 11 11 C 1.38873 * 120.07592 * 354.46429 * 10 9 7 12 12 C 1.38092 * 119.93314 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.07143 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.93268 * 179.97438 * 13 12 11 15 15 N 1.46902 * 109.47272 * 89.99941 * 14 13 12 16 16 C 1.46898 * 111.00020 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.47094 * 179.97438 * 16 15 14 18 18 C 1.34234 * 125.03247 * 94.99876 * 17 16 15 19 19 C 1.46488 * 106.99495 * 180.02562 * 18 17 16 20 20 C 1.39630 * 134.02920 * 180.02562 * 19 18 17 21 21 C 1.36631 * 119.76000 * 179.97438 * 20 19 18 22 22 C 1.38828 * 120.52948 * 0.02562 * 21 20 19 23 23 C 1.37749 * 120.66836 * 359.97438 * 22 21 20 24 24 C 1.39126 * 119.77533 * 359.96331 * 23 22 21 25 25 N 1.36827 * 125.03319 * 274.69666 * 17 16 15 26 26 H 0.96997 * 125.05972 * 0.02562 * 25 17 16 27 27 C 1.38305 * 120.13540 * 0.25121 * 13 12 11 28 28 C 1.38105 * 120.06682 * 359.44832 * 27 13 12 29 29 H 0.96995 * 120.00562 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03512 * 0.02562 * 11 10 9 31 31 H 1.08001 * 119.96812 * 179.97438 * 12 11 10 32 32 H 1.08999 * 109.47213 * 329.99573 * 14 13 12 33 33 H 1.09004 * 109.47150 * 209.99749 * 14 13 12 34 34 H 1.00897 * 111.00072 * 303.95242 * 15 14 13 35 35 H 1.08998 * 109.46972 * 299.99404 * 16 15 14 36 36 H 1.09001 * 109.47173 * 60.00100 * 16 15 14 37 37 H 1.07999 * 126.50763 * 359.97438 * 18 17 16 38 38 H 1.07994 * 120.12096 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.73302 * 180.02562 * 21 20 19 40 40 H 1.07998 * 119.66596 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.11285 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.96661 * 179.70623 * 27 13 12 43 43 H 1.07996 * 120.03339 * 180.26834 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4468 2.6527 0.7000 6 1 3.5470 1.4404 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4690 -2.1360 0.0014 9 8 3.3573 -1.2005 0.0011 10 6 3.9736 -2.4054 -0.1050 11 6 3.2238 -3.5742 -0.0921 12 6 3.8538 -4.7983 -0.1997 13 6 5.2302 -4.8611 -0.3197 14 6 5.9146 -6.1987 -0.4364 15 7 6.0195 -6.5732 -1.8530 16 6 6.6836 -7.8746 -2.0056 17 6 6.7722 -8.2248 -3.4688 18 6 7.8323 -7.9833 -4.2560 19 6 7.4953 -8.4799 -5.5923 20 6 8.1718 -8.5165 -6.8132 21 6 7.5654 -9.0640 -7.9084 22 6 6.2814 -9.5840 -7.8174 23 6 5.5960 -9.5582 -6.6228 24 6 6.1946 -9.0067 -5.4945 25 7 5.7863 -8.8412 -4.1900 26 1 4.9266 -9.1173 -3.8358 27 6 5.9803 -3.6992 -0.3272 28 6 5.3556 -2.4717 -0.2262 29 1 -0.4851 0.8400 -0.0004 30 1 2.1490 -3.5259 0.0020 31 1 3.2713 -5.7077 -0.1893 32 1 5.3339 -6.9516 0.0965 33 1 6.9126 -6.1353 -0.0025 34 1 5.1122 -6.5759 -2.2944 35 1 7.6869 -7.8223 -1.5828 36 1 6.1086 -8.6394 -1.4836 37 1 8.7579 -7.5116 -3.9606 38 1 9.1706 -8.1135 -6.8916 39 1 8.0892 -9.0924 -8.8524 40 1 5.8153 -10.0131 -8.6920 41 1 4.5974 -9.9649 -6.5622 42 1 7.0553 -3.7516 -0.4163 43 1 5.9415 -1.5645 -0.2364 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788511098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:23 Heat of formation + Delta-G solvation = 38.670289 kcal Electronic energy + Delta-G solvation = -24488.006769 eV Core-core repulsion = 20884.190876 eV Total energy + Delta-G solvation = -3603.815893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.16477 -40.90175 -38.86134 -38.04615 -36.39887 -34.46735 -32.91480 -32.04467 -31.77193 -30.24746 -29.81449 -27.68376 -26.51248 -24.61531 -23.65839 -23.10867 -22.27917 -21.92911 -21.18610 -19.82971 -19.12965 -18.64801 -17.19698 -17.07271 -16.57535 -16.25888 -16.12123 -15.80233 -15.64164 -15.53301 -15.25209 -14.99607 -14.92950 -14.68327 -14.41786 -14.17692 -14.03133 -13.85641 -13.61695 -13.18876 -12.98728 -12.86080 -12.54897 -12.48432 -12.40198 -12.30995 -12.11517 -11.90507 -11.72872 -11.27874 -10.91587 -10.63356 -9.79746 -9.44509 -9.06765 -8.98024 -8.59365 -8.51373 -6.23872 0.20400 0.58028 0.62541 0.73839 1.30365 1.34471 1.50900 1.72861 2.19765 2.26974 2.73839 3.01293 3.03362 3.15873 3.52079 3.71893 3.90006 4.02325 4.04749 4.18265 4.21488 4.27725 4.35286 4.47683 4.49469 4.59156 4.59732 4.62867 4.74038 4.76354 4.82505 5.01345 5.05651 5.11856 5.20696 5.27044 5.36832 5.57544 5.58563 5.72933 5.75980 5.80582 5.85740 5.89945 5.90733 6.00926 6.26231 6.27767 6.34315 6.67540 6.83167 7.58237 8.60230 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017136 B = 0.002087 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.620752 B =13415.117369 C =14028.720034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.399 4.399 8 H 0.081 0.919 9 O -0.247 6.247 10 C 0.119 3.881 11 C -0.239 4.239 12 C -0.067 4.067 13 C -0.150 4.150 14 C 0.121 3.879 15 N -0.690 5.690 16 C 0.125 3.875 17 C 0.084 3.916 18 C -0.202 4.202 19 C -0.138 4.138 20 C -0.088 4.088 21 C -0.154 4.154 22 C -0.107 4.107 23 C -0.142 4.142 24 C 0.078 3.922 25 N -0.589 5.589 26 H 0.422 0.578 27 C -0.048 4.048 28 C -0.195 4.195 29 H 0.285 0.715 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.339 0.661 35 H 0.112 0.888 36 H 0.057 0.943 37 H 0.154 0.846 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.135 0.865 42 H 0.152 0.848 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.685 -21.790 -9.428 29.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.098 0.902 9 O -0.154 6.154 10 C 0.070 3.930 11 C -0.259 4.259 12 C -0.086 4.086 13 C -0.151 4.151 14 C -0.007 4.007 15 N -0.321 5.321 16 C -0.004 4.004 17 C -0.024 4.024 18 C -0.228 4.228 19 C -0.142 4.142 20 C -0.106 4.106 21 C -0.173 4.173 22 C -0.126 4.126 23 C -0.163 4.163 24 C -0.030 4.030 25 N -0.193 5.193 26 H 0.260 0.740 27 C -0.067 4.067 28 C -0.214 4.214 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.152 0.848 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.156 0.844 35 H 0.130 0.870 36 H 0.075 0.925 37 H 0.171 0.829 38 H 0.150 0.850 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.152 0.848 42 H 0.170 0.830 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 17.060 -21.133 -9.392 28.738 hybrid contribution -1.783 0.189 0.443 1.847 sum 15.277 -20.945 -8.949 27.425 Atomic orbital electron populations 1.69725 1.06873 1.29595 1.50249 1.25289 0.95908 1.02189 0.95577 0.85216 0.78805 0.77429 0.79257 1.19162 1.19111 1.18715 1.20700 0.78144 0.96077 1.52572 0.90184 1.83521 1.21199 1.27581 1.83129 1.19718 0.93276 0.85099 0.94952 1.21252 1.00067 0.93335 1.11219 1.20943 0.94741 0.96014 0.96857 1.19677 0.92586 0.95875 1.06973 1.20689 1.00637 0.91302 0.88052 1.60533 1.27240 1.29501 1.14816 1.20599 1.02246 0.89757 0.87753 1.20382 0.88884 0.98507 0.94640 1.21700 1.00772 1.09121 0.91222 1.19606 0.94907 1.04426 0.95285 1.20570 1.00102 0.98906 0.91037 1.20965 0.96113 1.01131 0.99127 1.21169 0.94882 0.99342 0.97178 1.20352 1.01113 1.03941 0.90866 1.18531 0.95487 1.02844 0.86101 1.41765 1.17166 1.53217 1.07175 0.74004 1.20953 1.00451 0.89979 0.95274 1.20557 0.90536 0.99945 1.10406 0.90578 0.87640 0.84828 0.93240 0.88531 0.84384 0.86989 0.92544 0.82868 0.84985 0.83990 0.83492 0.84761 0.83018 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.56 13.96 21.61 0.30 -55.26 16 2 C 0.01 0.50 5.49 84.83 0.47 0.97 16 3 Si 0.97 45.92 28.62 68.60 1.96 47.89 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.40 -23.72 9.95 67.92 0.68 -23.05 16 8 H 0.08 4.98 5.44 -2.91 -0.02 4.97 16 9 O -0.25 -13.56 8.59 -22.86 -0.20 -13.76 16 10 C 0.12 5.57 6.65 22.58 0.15 5.72 16 11 C -0.24 -10.42 9.17 22.39 0.21 -10.22 16 12 C -0.07 -2.20 9.69 22.25 0.22 -1.98 16 13 C -0.15 -4.16 5.40 -19.83 -0.11 -4.27 16 14 C 0.12 2.25 5.81 85.56 0.50 2.75 16 15 N -0.69 -12.77 6.48 -521.97 -3.38 -16.15 16 16 C 0.13 1.74 6.20 85.56 0.53 2.27 16 17 C 0.08 1.52 6.59 40.87 0.27 1.79 16 18 C -0.20 -4.18 10.95 23.51 0.26 -3.93 16 19 C -0.14 -3.08 6.37 -20.20 -0.13 -3.21 16 20 C -0.09 -1.69 10.05 22.23 0.22 -1.47 16 21 C -0.15 -2.52 9.97 22.03 0.22 -2.30 16 22 C -0.11 -1.68 10.01 22.30 0.22 -1.46 16 23 C -0.14 -2.52 10.08 22.37 0.23 -2.29 16 24 C 0.08 1.63 7.28 39.03 0.28 1.91 16 25 N -0.59 -10.28 6.07 -175.91 -1.07 -11.35 16 26 H 0.42 5.25 8.96 -92.71 -0.83 4.42 16 27 C -0.05 -1.44 9.69 22.25 0.22 -1.23 16 28 C -0.20 -7.46 9.99 22.39 0.22 -7.24 16 29 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.11 5.09 5.64 -2.91 -0.02 5.07 16 31 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 32 H 0.05 0.79 8.08 -2.39 -0.02 0.77 16 33 H 0.10 1.50 8.08 -2.38 -0.02 1.48 16 34 H 0.34 6.83 8.72 -89.70 -0.78 6.05 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 38 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 43 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -71.20 368.34 1.71 -69.49 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.56 Total: 26.36 kcal Atomic # 6 Polarization: -51.87 SS G_CDS: 4.65 Total: -47.22 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -4.15 Total: -82.76 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.20 Total: -13.76 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.96 Total: 47.89 kcal Total: -71.20 1.71 -69.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788511098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.165 kcal (2) G-P(sol) polarization free energy of solvation -71.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds