Wall clock time and date at job start Tue Mar 31 2020 13:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99818 * 2 1 4 4 H 1.48495 * 109.47222 * 89.99534 * 3 2 1 5 5 H 1.48501 * 109.46453 * 210.00041 * 3 2 1 6 6 H 1.48504 * 109.46818 * 329.99217 * 3 2 1 7 7 C 1.37871 * 119.99702 * 180.27177 * 2 1 3 8 8 H 1.08001 * 119.99865 * 186.30401 * 7 2 1 9 9 C 1.50699 * 120.00483 * 6.30155 * 7 2 1 10 10 H 1.08997 * 109.47179 * 30.32774 * 9 7 2 11 11 C 1.52994 * 109.47220 * 150.33653 * 9 7 2 12 12 C 1.50709 * 109.47021 * 294.05212 * 11 9 7 13 13 O 1.21282 * 119.99520 * 0.02562 * 12 11 9 14 14 N 1.34770 * 120.00134 * 180.02562 * 12 11 9 15 15 C 1.46564 * 125.01846 * 179.72322 * 14 12 11 16 16 C 1.53730 * 105.20004 * 179.91251 * 15 14 12 17 17 C 1.51333 * 104.63046 * 0.33576 * 16 15 14 18 18 N 1.32038 * 130.72044 * 179.76803 * 17 16 15 19 19 C 1.31765 * 121.94589 * 180.02562 * 18 17 16 20 20 C 1.38262 * 120.69926 * 359.97438 * 19 18 17 21 21 C 1.38309 * 119.29482 * 0.02562 * 20 19 18 22 22 C 1.38536 * 108.37886 * 359.78158 * 17 16 15 23 23 C 1.50703 * 109.47224 * 270.33529 * 9 7 2 24 24 C 1.38236 * 119.99771 * 304.23765 * 23 9 7 25 25 C 1.38240 * 120.00157 * 179.78713 * 24 23 9 26 26 C 1.38241 * 119.99562 * 0.43863 * 25 24 23 27 27 C 1.38231 * 119.99696 * 359.81411 * 26 25 24 28 28 C 1.38229 * 120.00400 * 124.50647 * 23 9 7 29 29 H 0.96995 * 120.00275 * 174.80286 * 1 2 3 30 30 H 1.08995 * 109.47734 * 54.05685 * 11 9 7 31 31 H 1.09005 * 109.47448 * 174.05789 * 11 9 7 32 32 H 1.09000 * 110.29449 * 298.96910 * 15 14 12 33 33 H 1.09004 * 110.29540 * 61.10266 * 15 14 12 34 34 H 1.08988 * 110.58567 * 241.45168 * 16 15 14 35 35 H 1.09000 * 110.31771 * 119.07788 * 16 15 14 36 36 H 1.07998 * 119.64965 * 180.02562 * 19 18 17 37 37 H 1.08002 * 120.35279 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.68204 * 180.02562 * 21 20 19 39 39 H 1.08006 * 120.00283 * 359.97438 * 24 23 9 40 40 H 1.07998 * 120.00578 * 180.27040 * 25 24 23 41 41 H 1.07995 * 119.99560 * 179.83536 * 26 25 24 42 42 H 1.08004 * 119.99659 * 180.02562 * 27 26 25 43 43 H 1.08002 * 119.99848 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7002 7 6 2.0045 -1.1940 -0.0057 8 1 3.0796 -1.1974 0.0970 9 6 1.2579 -2.4945 -0.1551 10 1 0.3613 -2.3321 -0.7533 11 6 2.1552 -3.5210 -0.8492 12 6 2.4270 -3.0759 -2.2632 13 8 1.9503 -2.0395 -2.6749 14 7 3.1998 -3.8295 -3.0701 15 6 3.5300 -3.5059 -4.4609 16 6 4.4272 -4.6583 -4.9408 17 6 4.5337 -5.5824 -3.7472 18 7 5.1763 -6.7261 -3.5980 19 6 5.1507 -7.3975 -2.4645 20 6 4.4412 -6.9209 -1.3777 21 6 3.7532 -5.7264 -1.4897 22 6 3.7997 -5.0376 -2.7062 23 6 0.8667 -3.0085 1.2065 24 6 1.8335 -3.2059 2.1747 25 6 1.4742 -3.6732 3.4251 26 6 0.1493 -3.9518 3.7044 27 6 -0.8167 -3.7594 2.7345 28 6 -0.4580 -3.2879 1.4856 29 1 -0.4850 -0.8365 -0.0761 30 1 3.0972 -3.6054 -0.3074 31 1 1.6559 -4.4898 -0.8630 32 1 2.6227 -3.4547 -5.0627 33 1 4.0717 -2.5613 -4.5109 34 1 5.4120 -4.2856 -5.2221 35 1 3.9629 -5.1747 -5.7810 36 1 5.6904 -8.3295 -2.3832 37 1 4.4237 -7.4760 -0.4514 38 1 3.1920 -5.3332 -0.6549 39 1 2.8692 -2.9921 1.9552 40 1 2.2289 -3.8233 4.1829 41 1 -0.1310 -4.3194 4.6804 42 1 -1.8519 -3.9766 2.9528 43 1 -1.2128 -3.1375 0.7279 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793687307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:40 Heat of formation + Delta-G solvation = 36.906828 kcal Electronic energy + Delta-G solvation = -26867.151846 eV Core-core repulsion = 23263.259483 eV Total energy + Delta-G solvation = -3603.892363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33787 -39.13895 -38.41785 -36.61203 -34.46299 -33.34191 -31.40541 -30.59882 -30.18486 -29.77431 -28.82025 -25.52726 -23.95217 -23.62885 -22.83806 -21.84607 -21.61523 -20.01548 -19.60963 -17.20482 -16.93617 -16.77831 -16.32293 -16.07410 -15.94198 -14.98032 -14.80656 -14.25631 -14.11908 -13.87191 -13.70447 -13.54688 -13.34086 -12.99332 -12.76169 -12.57644 -12.40641 -12.22635 -12.20091 -11.95043 -11.89787 -11.52707 -11.10887 -10.77112 -10.63212 -10.50332 -10.24552 -10.11203 -9.80231 -9.57968 -9.53723 -9.35516 -8.74743 -8.36789 -8.21182 -7.83448 -7.72422 -6.32853 -4.01968 1.01789 1.20693 2.11703 2.16440 2.85954 3.08562 3.44233 3.50464 3.63850 3.75917 3.93985 4.35709 4.52716 4.58508 4.71840 4.74120 4.97941 4.98704 5.09120 5.26819 5.38669 5.49493 5.53708 5.54825 5.59272 5.66764 5.69119 5.74946 5.79328 5.85752 5.90656 6.03994 6.08607 6.22620 6.27539 6.32558 6.55025 6.62891 6.70162 6.84097 7.07579 7.15437 7.28422 7.55889 7.61244 7.77505 7.91608 8.10066 8.40398 8.49352 8.87601 9.67758 11.07350 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.004945 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.509407 B = 5661.026617 C = 7491.483151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.034 3.966 3 Si 1.066 2.934 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.574 4.574 8 H 0.046 0.954 9 C 0.071 3.929 10 H 0.052 0.948 11 C -0.119 4.119 12 C 0.525 3.475 13 O -0.466 6.466 14 N -0.561 5.561 15 C 0.106 3.894 16 C -0.072 4.072 17 C 0.071 3.929 18 N -0.452 5.452 19 C 0.064 3.936 20 C -0.136 4.136 21 C -0.125 4.125 22 C 0.118 3.882 23 C -0.033 4.033 24 C -0.109 4.109 25 C -0.128 4.128 26 C -0.151 4.151 27 C -0.123 4.123 28 C -0.129 4.129 29 H 0.270 0.730 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.158 0.842 37 H 0.140 0.860 38 H 0.152 0.848 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.090 -13.866 -2.863 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.172 4.172 3 Si 0.895 3.105 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.611 4.611 8 H 0.065 0.935 9 C 0.052 3.948 10 H 0.070 0.930 11 C -0.158 4.158 12 C 0.315 3.685 13 O -0.335 6.335 14 N -0.286 5.286 15 C -0.016 4.016 16 C -0.110 4.110 17 C -0.070 4.070 18 N -0.160 5.160 19 C -0.095 4.095 20 C -0.156 4.156 21 C -0.153 4.153 22 C 0.018 3.982 23 C -0.033 4.033 24 C -0.127 4.127 25 C -0.146 4.146 26 C -0.169 4.169 27 C -0.141 4.141 28 C -0.147 4.147 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.175 0.825 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.944 -11.735 -3.710 14.132 hybrid contribution -0.229 -1.269 0.856 1.548 sum 6.715 -13.005 -2.855 14.912 Atomic orbital electron populations 1.70738 1.06868 1.31190 1.44963 1.25606 0.96404 1.02268 0.92955 0.83595 0.74894 0.75595 0.76441 1.21673 1.21632 1.20982 1.21553 0.93855 0.90540 1.55171 0.93538 1.17912 0.96023 0.92855 0.88034 0.92969 1.22054 1.02386 1.00241 0.91162 1.21020 0.76787 0.83175 0.87565 1.90789 1.46745 1.21221 1.74713 1.46343 1.48557 1.20199 1.13543 1.22044 0.99572 0.98589 0.81436 1.21060 1.01336 0.93145 0.95504 1.21209 0.97063 0.93398 0.95369 1.66720 1.17740 1.05700 1.25867 1.22491 0.99219 0.99647 0.88117 1.21940 0.97319 0.95886 1.00503 1.21710 1.01511 0.95436 0.96692 1.19332 0.95139 0.88010 0.95712 1.20751 0.92396 0.91352 0.98822 1.20914 0.99644 0.99259 0.92875 1.21015 0.95838 1.00946 0.96817 1.20841 0.93524 1.03881 0.98690 1.20970 0.98420 1.00723 0.94020 1.21060 0.96374 1.00525 0.96755 0.91809 0.89445 0.90871 0.89746 0.89623 0.88459 0.88530 0.82512 0.84197 0.83058 0.86761 0.87366 0.87502 0.87391 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.63 55.43 0.76 -26.23 16 2 C 0.03 0.95 5.45 -17.82 -0.10 0.86 16 3 Si 1.07 25.91 29.91 -169.99 -5.08 20.83 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.57 -15.23 6.40 -34.44 -0.22 -15.45 16 8 H 0.05 1.25 7.82 -52.49 -0.41 0.84 16 9 C 0.07 1.65 1.31 -92.93 -0.12 1.52 16 10 H 0.05 1.36 6.24 -51.93 -0.32 1.04 16 11 C -0.12 -2.27 2.77 -27.88 -0.08 -2.34 16 12 C 0.52 10.55 7.56 -10.98 -0.08 10.46 16 13 O -0.47 -11.36 15.31 5.56 0.09 -11.27 16 14 N -0.56 -9.19 3.13 -112.86 -0.35 -9.54 16 15 C 0.11 1.39 7.06 -3.63 -0.03 1.37 16 16 C -0.07 -0.79 6.94 -27.19 -0.19 -0.97 16 17 C 0.07 0.96 7.41 -82.08 -0.61 0.36 16 18 N -0.45 -5.96 10.35 -9.17 -0.09 -6.05 16 19 C 0.06 0.70 11.19 -17.57 -0.20 0.50 16 20 C -0.14 -1.45 10.09 -39.55 -0.40 -1.85 16 21 C -0.12 -1.64 8.96 -38.95 -0.35 -1.99 16 22 C 0.12 1.74 6.60 -83.55 -0.55 1.18 16 23 C -0.03 -0.69 4.76 -104.62 -0.50 -1.19 16 24 C -0.11 -2.13 8.88 -39.58 -0.35 -2.48 16 25 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 26 C -0.15 -2.53 10.05 -39.58 -0.40 -2.92 16 27 C -0.12 -2.18 10.05 -39.59 -0.40 -2.58 16 28 C -0.13 -2.61 9.67 -39.59 -0.38 -2.99 16 29 H 0.27 7.98 6.68 -40.82 -0.27 7.71 16 30 H 0.09 1.57 6.65 -51.93 -0.35 1.23 16 31 H 0.07 1.23 6.92 -51.93 -0.36 0.87 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.10 0.90 8.14 -51.94 -0.42 0.48 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.15 1.98 4.37 -52.49 -0.23 1.75 16 39 H 0.11 2.18 7.80 -52.48 -0.41 1.77 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 42 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.11 2.21 7.95 -52.49 -0.42 1.79 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -33.29 356.12 -10.04 -43.33 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.37 Total: 4.72 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -5.34 Total: -21.14 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.31 Total: -41.82 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.08 Total: 20.83 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.29 -10.04 -43.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793687307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.232 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds