Wall clock time and date at job start Tue Mar 31 2020 13:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35955 * 117.00000 * 2 1 4 4 C 1.38657 * 120.06097 * 359.97438 * 3 2 1 5 5 C 1.38179 * 119.97043 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.09597 * 359.74053 * 5 4 3 7 7 C 1.38258 * 120.12245 * 0.51474 * 6 5 4 8 8 C 1.50697 * 119.98312 * 179.76196 * 7 6 5 9 9 C 1.53003 * 109.47140 * 264.72008 * 8 7 6 10 10 C 1.50706 * 109.46975 * 179.97438 * 9 8 7 11 11 O 1.20822 * 119.99718 * 0.02562 * 10 9 8 12 12 O 1.34227 * 119.99832 * 180.02562 * 10 9 8 13 13 C 1.45198 * 116.99872 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.47292 * 179.97438 * 13 12 10 15 15 C 1.50703 * 115.54630 * 294.88263 * 14 13 12 16 16 H 1.08004 * 119.99859 * 99.48158 * 15 14 13 17 17 C 1.37875 * 120.00178 * 279.20149 * 15 14 13 18 18 N 1.31520 * 119.99700 * 355.33028 * 17 15 14 19 19 Si 1.86798 * 120.00335 * 175.33484 * 17 15 14 20 20 H 1.48503 * 109.46745 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47220 * 119.99807 * 19 17 15 22 22 H 1.48500 * 109.47317 * 240.00111 * 19 17 15 23 23 C 1.52993 * 117.51769 * 80.58177 * 14 13 12 24 24 C 1.52990 * 60.00095 * 107.48213 * 23 14 13 25 25 C 1.38332 * 120.03144 * 359.48857 * 7 6 5 26 26 F 1.35091 * 120.05153 * 180.23373 * 25 7 6 27 27 H 1.08997 * 109.47062 * 60.00530 * 1 2 3 28 28 H 1.09001 * 109.46585 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47297 * 299.99972 * 1 2 3 30 30 H 1.07996 * 120.01985 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.95916 * 179.97438 * 5 4 3 32 32 H 1.08000 * 119.94327 * 180.27451 * 6 5 4 33 33 H 1.09004 * 109.46901 * 144.72402 * 8 7 6 34 34 H 1.08998 * 109.47489 * 24.72650 * 8 7 6 35 35 H 1.09001 * 109.46901 * 60.00919 * 9 8 7 36 36 H 1.08991 * 109.47511 * 300.00248 * 9 8 7 37 37 H 1.09003 * 109.47186 * 60.00421 * 13 12 10 38 38 H 1.08998 * 109.47126 * 299.99920 * 13 12 10 39 39 H 0.97000 * 119.99589 * 180.02562 * 18 17 15 40 40 H 1.08997 * 117.50221 * 214.97500 * 23 14 13 41 41 H 1.09005 * 117.49787 * 359.97438 * 23 14 13 42 42 H 1.09001 * 117.50602 * 252.51232 * 24 23 14 43 43 H 1.09004 * 117.51766 * 107.47804 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9215 3.6052 -0.0011 6 6 3.3023 3.6777 0.0043 7 6 4.0579 2.5199 -0.0004 8 6 5.5626 2.6026 0.0001 9 6 6.0793 2.5041 -1.4367 10 6 7.5840 2.5875 -1.4362 11 8 8.1818 2.7123 -0.3937 12 8 8.2601 2.5230 -2.5940 13 6 9.7075 2.6092 -2.5178 14 6 10.2988 2.5174 -3.9260 15 6 10.0906 1.2034 -4.6339 16 1 9.3005 1.1021 -5.3631 17 6 10.9126 0.1322 -4.3548 18 7 11.9344 0.2820 -3.5404 19 14 10.5750 -1.5319 -5.1334 20 1 9.3760 -1.4367 -6.0044 21 1 11.7463 -1.9441 -5.9478 22 1 10.3346 -2.5376 -4.0675 23 6 10.2944 3.7877 -4.7787 24 6 11.6072 3.2642 -4.1929 25 6 3.4334 1.2856 0.0000 26 9 4.1713 0.1541 0.0002 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2137 2.3201 -0.0014 31 1 1.3341 4.5116 -0.0019 32 1 3.7915 4.6406 0.0084 33 1 5.9713 1.7824 0.5902 34 1 5.8742 3.5528 0.4339 35 1 5.6706 3.3244 -2.0268 36 1 5.7678 1.5540 -1.8705 37 1 10.0889 1.7888 -1.9099 38 1 9.9915 3.5593 -2.0653 39 1 12.5128 -0.4715 -3.3444 40 1 10.1409 3.6731 -5.8517 41 1 9.8698 4.6891 -4.3367 42 1 12.0467 3.8211 -3.3653 43 1 12.3176 2.8049 -4.8802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797075385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:13 Heat of formation + Delta-G solvation = -127.338092 kcal Electronic energy + Delta-G solvation = -26375.276427 eV Core-core repulsion = 22301.199895 eV Total energy + Delta-G solvation = -4074.076533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.88027 -40.34354 -39.76810 -38.07004 -36.81102 -35.26829 -33.92935 -31.94868 -30.59959 -29.99366 -27.72471 -26.97238 -25.42420 -24.56330 -22.84991 -21.58749 -21.13050 -20.00179 -19.23730 -18.37896 -17.34869 -17.24595 -16.89122 -16.54638 -16.34850 -15.89138 -15.40542 -15.13326 -15.03106 -14.81934 -14.60229 -14.05684 -13.98308 -13.55944 -13.18393 -12.92098 -12.89219 -12.43789 -12.35064 -12.04406 -11.93898 -11.79649 -11.56660 -11.38992 -11.28558 -11.05849 -10.95542 -10.84752 -10.50002 -10.26635 -10.00641 -9.83519 -9.47835 -9.01691 -8.89983 -8.49492 -8.44609 -8.17320 -6.04880 -4.10312 0.80055 0.96360 2.78253 2.78947 3.18135 3.30113 3.38642 3.42544 3.44041 4.00067 4.36595 4.41522 4.47357 4.68357 4.75240 4.83563 4.88893 4.91094 4.97474 5.09374 5.20399 5.24288 5.29029 5.47698 5.60872 5.69283 5.71760 5.83098 5.98751 5.99894 6.04682 6.15879 6.25126 6.33838 6.34901 6.53826 6.68636 6.75045 6.95776 7.05324 7.27467 7.37222 7.51079 7.88431 8.37254 8.46953 8.91304 9.55546 11.04297 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.002790 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.908889 B =10033.635650 C =11159.201559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.095 3.905 4 C -0.188 4.188 5 C -0.088 4.088 6 C -0.123 4.123 7 C -0.075 4.075 8 C -0.070 4.070 9 C -0.109 4.109 10 C 0.455 3.545 11 O -0.525 6.525 12 O -0.337 6.337 13 C 0.116 3.884 14 C 0.036 3.964 15 C -0.488 4.488 16 H 0.063 0.937 17 C 0.068 3.932 18 N -0.882 5.882 19 Si 0.892 3.108 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.205 4.205 24 C -0.144 4.144 25 C 0.074 3.926 26 F -0.126 7.126 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.261 0.739 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.007 6.008 7.881 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.049 3.951 4 C -0.207 4.207 5 C -0.107 4.107 6 C -0.142 4.142 7 C -0.076 4.076 8 C -0.107 4.107 9 C -0.147 4.147 10 C 0.298 3.702 11 O -0.415 6.415 12 O -0.252 6.252 13 C 0.043 3.957 14 C 0.035 3.965 15 C -0.526 4.526 16 H 0.082 0.918 17 C -0.135 4.135 18 N -0.519 5.519 19 Si 0.719 3.281 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.242 4.242 24 C -0.182 4.182 25 C 0.054 3.946 26 F -0.105 7.105 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.514 5.688 8.235 24.639 hybrid contribution -0.129 -1.053 -0.230 1.086 sum -22.643 4.635 8.006 24.460 Atomic orbital electron populations 1.23114 0.77956 1.04311 1.01414 1.86160 1.21679 1.25790 1.88665 1.19003 0.90748 0.85698 0.99653 1.21121 1.00201 0.91563 1.07780 1.20987 0.94515 0.97178 0.97987 1.20934 0.93486 0.97745 1.02000 1.19802 0.96698 0.91000 1.00077 1.20366 0.88550 1.05428 0.96337 1.21276 0.89127 1.06066 0.98244 1.23443 0.91272 0.72883 0.82601 1.90613 1.71112 1.46251 1.33537 1.86524 1.24203 1.81539 1.32928 1.22867 0.73487 0.99567 0.99798 1.18784 0.96126 0.91504 0.90054 1.20434 1.15595 0.93570 1.22996 0.91850 1.25018 0.94572 0.98895 0.95048 1.70012 1.15295 1.31012 1.35538 0.86535 0.78308 0.84021 0.79209 1.19542 1.21010 1.20881 1.22964 1.03469 0.98338 0.99441 1.22547 0.91095 1.02821 1.01742 1.16854 0.85860 0.82886 1.08988 1.91525 1.76296 1.48621 1.94029 0.92395 0.87945 0.92497 0.84631 0.84972 0.84547 0.89296 0.89072 0.87720 0.87674 0.90776 0.94222 0.92977 0.90118 0.91567 0.91732 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.39 10.36 -19.60 -0.20 -3.59 16 3 C 0.10 1.05 6.69 -39.18 -0.26 0.79 16 4 C -0.19 -1.53 9.04 -39.45 -0.36 -1.89 16 5 C -0.09 -0.66 10.04 -39.59 -0.40 -1.06 16 6 C -0.12 -1.08 9.67 -39.56 -0.38 -1.46 16 7 C -0.07 -0.84 5.14 -104.58 -0.54 -1.38 16 8 C -0.07 -0.87 4.41 -27.88 -0.12 -0.99 16 9 C -0.11 -1.53 5.79 -27.88 -0.16 -1.69 16 10 C 0.45 8.69 7.96 36.01 0.29 8.97 16 11 O -0.52 -11.16 15.73 -18.75 -0.29 -11.45 16 12 O -0.34 -7.47 10.16 -39.25 -0.40 -7.87 16 13 C 0.12 2.80 5.29 37.16 0.20 2.99 16 14 C 0.04 0.90 1.62 -155.66 -0.25 0.65 16 15 C -0.49 -13.51 8.75 -34.44 -0.30 -13.81 16 16 H 0.06 1.76 7.82 -52.48 -0.41 1.35 16 17 C 0.07 1.88 5.44 -17.82 -0.10 1.78 16 18 N -0.88 -25.22 12.86 55.43 0.71 -24.51 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.20 -4.50 9.95 -26.74 -0.27 -4.76 16 24 C -0.14 -3.39 9.39 -26.74 -0.25 -3.64 16 25 C 0.07 0.94 7.25 -39.30 -0.28 0.66 16 26 F -0.13 -1.90 16.41 2.25 0.04 -1.86 16 27 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.14 16 30 H 0.14 0.74 6.30 -52.49 -0.33 0.41 16 31 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 32 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.09 1.25 7.75 -51.93 -0.40 0.85 16 34 H 0.09 1.05 8.01 -51.93 -0.42 0.63 16 35 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.07 1.98 8.13 -51.93 -0.42 1.55 16 38 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.09 2.20 8.14 -51.93 -0.42 1.78 16 LS Contribution 375.46 15.07 5.66 5.66 Total: -1.00 -32.55 375.46 -7.85 -40.39 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.14 Total: 0.48 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -2.20 Total: -13.69 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.71 Total: -24.51 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.90 Total: -22.91 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.55 -7.85 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797075385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.944 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds