Wall clock time and date at job start Tue Mar 31 2020 13:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35955 * 117.00000 * 2 1 4 4 C 1.38657 * 120.06097 * 359.97438 * 3 2 1 5 5 C 1.38179 * 119.97043 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.09597 * 359.74053 * 5 4 3 7 7 C 1.38258 * 120.12245 * 0.51474 * 6 5 4 8 8 C 1.50697 * 119.98312 * 179.76196 * 7 6 5 9 9 C 1.53003 * 109.47140 * 264.72008 * 8 7 6 10 10 C 1.50706 * 109.46975 * 179.97438 * 9 8 7 11 11 O 1.20822 * 119.99718 * 0.02562 * 10 9 8 12 12 O 1.34227 * 119.99832 * 180.02562 * 10 9 8 13 13 C 1.45198 * 116.99872 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.47292 * 179.97438 * 13 12 10 15 15 C 1.50703 * 115.54630 * 294.88263 * 14 13 12 16 16 H 1.08004 * 119.99859 * 99.48158 * 15 14 13 17 17 C 1.37875 * 120.00178 * 279.20149 * 15 14 13 18 18 N 1.31520 * 119.99700 * 355.33028 * 17 15 14 19 19 Si 1.86798 * 120.00335 * 175.33484 * 17 15 14 20 20 H 1.48503 * 109.46745 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47220 * 119.99807 * 19 17 15 22 22 H 1.48500 * 109.47317 * 240.00111 * 19 17 15 23 23 C 1.52993 * 117.51769 * 80.58177 * 14 13 12 24 24 C 1.52990 * 60.00095 * 107.48213 * 23 14 13 25 25 C 1.38332 * 120.03144 * 359.48857 * 7 6 5 26 26 F 1.35091 * 120.05153 * 180.23373 * 25 7 6 27 27 H 1.08997 * 109.47062 * 60.00530 * 1 2 3 28 28 H 1.09001 * 109.46585 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47297 * 299.99972 * 1 2 3 30 30 H 1.07996 * 120.01985 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.95916 * 179.97438 * 5 4 3 32 32 H 1.08000 * 119.94327 * 180.27451 * 6 5 4 33 33 H 1.09004 * 109.46901 * 144.72402 * 8 7 6 34 34 H 1.08998 * 109.47489 * 24.72650 * 8 7 6 35 35 H 1.09001 * 109.46901 * 60.00919 * 9 8 7 36 36 H 1.08991 * 109.47511 * 300.00248 * 9 8 7 37 37 H 1.09003 * 109.47186 * 60.00421 * 13 12 10 38 38 H 1.08998 * 109.47126 * 299.99920 * 13 12 10 39 39 H 0.97000 * 119.99589 * 180.02562 * 18 17 15 40 40 H 1.08997 * 117.50221 * 214.97500 * 23 14 13 41 41 H 1.09005 * 117.49787 * 359.97438 * 23 14 13 42 42 H 1.09001 * 117.50602 * 252.51232 * 24 23 14 43 43 H 1.09004 * 117.51766 * 107.47804 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9215 3.6052 -0.0011 6 6 3.3023 3.6777 0.0043 7 6 4.0579 2.5199 -0.0004 8 6 5.5626 2.6026 0.0001 9 6 6.0793 2.5041 -1.4367 10 6 7.5840 2.5875 -1.4362 11 8 8.1818 2.7123 -0.3937 12 8 8.2601 2.5230 -2.5940 13 6 9.7075 2.6092 -2.5178 14 6 10.2988 2.5174 -3.9260 15 6 10.0906 1.2034 -4.6339 16 1 9.3005 1.1021 -5.3631 17 6 10.9126 0.1322 -4.3548 18 7 11.9344 0.2820 -3.5404 19 14 10.5750 -1.5319 -5.1334 20 1 9.3760 -1.4367 -6.0044 21 1 11.7463 -1.9441 -5.9478 22 1 10.3346 -2.5376 -4.0675 23 6 10.2944 3.7877 -4.7787 24 6 11.6072 3.2642 -4.1929 25 6 3.4334 1.2856 0.0000 26 9 4.1713 0.1541 0.0002 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2137 2.3201 -0.0014 31 1 1.3341 4.5116 -0.0019 32 1 3.7915 4.6406 0.0084 33 1 5.9713 1.7824 0.5902 34 1 5.8742 3.5528 0.4339 35 1 5.6706 3.3244 -2.0268 36 1 5.7678 1.5540 -1.8705 37 1 10.0889 1.7888 -1.9099 38 1 9.9915 3.5593 -2.0653 39 1 12.5128 -0.4715 -3.3444 40 1 10.1409 3.6731 -5.8517 41 1 9.8698 4.6891 -4.3367 42 1 12.0467 3.8211 -3.3653 43 1 12.3176 2.8049 -4.8802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797075385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:12 Heat of formation + Delta-G solvation = -144.360563 kcal Electronic energy + Delta-G solvation = -26376.014577 eV Core-core repulsion = 22301.199895 eV Total energy + Delta-G solvation = -4074.814683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.85823 -41.45640 -40.96077 -38.92007 -38.51709 -36.99259 -34.93296 -34.04949 -31.30841 -30.92251 -28.77899 -28.18053 -27.37583 -25.78877 -23.55605 -23.00389 -22.44046 -21.39846 -21.19853 -19.18236 -18.56724 -18.35672 -18.13638 -17.90575 -17.42646 -17.25113 -16.94647 -16.58731 -16.04902 -15.73884 -15.69398 -15.50933 -15.19470 -14.74217 -14.60003 -14.11671 -13.93358 -13.72101 -13.58371 -13.42914 -13.06593 -12.98263 -12.89435 -12.84878 -12.51165 -12.39560 -12.14530 -12.08118 -12.01083 -11.96406 -11.68551 -11.66677 -11.30880 -10.90697 -10.47749 -10.08610 -9.78037 -9.21936 -8.16171 -6.27065 0.06758 0.26131 1.23617 1.37545 1.40815 1.51590 1.81745 2.20063 2.40020 2.57361 3.13037 3.26658 3.38032 3.57914 3.80159 3.82706 3.99185 4.00579 4.13817 4.18851 4.26083 4.37438 4.38710 4.39052 4.42062 4.46605 4.52205 4.65034 4.71979 4.82997 4.87140 4.94921 4.97127 5.06748 5.10897 5.18537 5.32161 5.43469 5.44420 5.59158 5.68003 5.71319 5.74822 6.31351 6.33905 6.78221 6.82469 7.41489 8.92670 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.002790 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.908889 B =10033.635650 C =11159.201559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.341 6.341 3 C 0.081 3.919 4 C -0.180 4.180 5 C -0.076 4.076 6 C -0.121 4.121 7 C -0.083 4.083 8 C -0.062 4.062 9 C -0.098 4.098 10 C 0.451 3.549 11 O -0.550 6.550 12 O -0.348 6.348 13 C 0.128 3.872 14 C 0.000 4.000 15 C -0.503 4.503 16 H 0.055 0.945 17 C 0.021 3.979 18 N -0.910 5.910 19 Si 0.950 3.050 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.285 1.285 23 C -0.175 4.175 24 C -0.146 4.146 25 C 0.031 3.969 26 F -0.153 7.153 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.167 0.833 31 H 0.171 0.829 32 H 0.161 0.839 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.261 0.739 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.948 7.956 7.468 28.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.255 6.255 3 C 0.035 3.965 4 C -0.199 4.199 5 C -0.094 4.094 6 C -0.139 4.139 7 C -0.084 4.084 8 C -0.100 4.100 9 C -0.135 4.135 10 C 0.296 3.704 11 O -0.441 6.441 12 O -0.264 6.264 13 C 0.054 3.946 14 C 0.000 4.000 15 C -0.541 4.541 16 H 0.073 0.927 17 C -0.179 4.179 18 N -0.547 5.547 19 Si 0.775 3.225 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.211 1.211 23 C -0.212 4.212 24 C -0.184 4.184 25 C 0.012 3.988 26 F -0.132 7.132 27 H 0.091 0.909 28 H 0.132 0.868 29 H 0.092 0.908 30 H 0.184 0.816 31 H 0.188 0.812 32 H 0.178 0.822 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.157 0.843 36 H 0.121 0.879 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.478 7.643 7.816 27.724 hybrid contribution 0.660 -1.618 -0.058 1.748 sum -24.817 6.025 7.758 26.691 Atomic orbital electron populations 1.23428 0.75602 1.05732 1.02905 1.86118 1.24256 1.26379 1.88794 1.19225 0.90371 0.86811 1.00053 1.21531 1.01627 0.90717 1.05977 1.21459 0.94187 0.98269 0.95484 1.21266 0.94227 0.97604 1.00844 1.19707 0.95653 0.91510 1.01553 1.20256 0.89906 1.04919 0.94898 1.21398 0.84934 1.07214 0.99960 1.24464 0.93024 0.71512 0.81391 1.90596 1.72037 1.47349 1.34140 1.86531 1.23125 1.82116 1.34622 1.22481 0.74831 0.98564 0.98692 1.18881 0.97955 0.92106 0.91073 1.20695 1.15217 0.95192 1.22979 0.92677 1.25722 0.94471 1.02055 0.95634 1.70109 1.16076 1.31814 1.36743 0.85627 0.78486 0.79974 0.78387 1.18884 1.20188 1.21112 1.22982 1.01324 0.97520 0.99350 1.22476 0.90968 1.02899 1.02038 1.17354 0.86965 0.82684 1.11814 1.91441 1.77078 1.50104 1.94583 0.90901 0.86806 0.90819 0.81589 0.81153 0.82151 0.91942 0.87936 0.84345 0.87869 0.94615 0.92908 0.93040 0.89639 0.88800 0.90416 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -7.36 10.36 -93.05 -0.96 -8.33 16 3 C 0.08 1.73 6.69 22.53 0.15 1.88 16 4 C -0.18 -2.36 9.04 22.36 0.20 -2.16 16 5 C -0.08 -0.81 10.04 22.26 0.22 -0.59 16 6 C -0.12 -1.74 9.67 22.28 0.22 -1.52 16 7 C -0.08 -1.79 5.14 -19.84 -0.10 -1.90 16 8 C -0.06 -1.56 4.41 29.85 0.13 -1.42 16 9 C -0.10 -2.67 5.79 29.85 0.17 -2.50 16 10 C 0.45 17.36 7.96 71.24 0.57 17.92 16 11 O -0.55 -23.88 15.73 21.98 0.35 -23.54 16 12 O -0.35 -15.55 10.16 -51.38 -0.52 -16.07 16 13 C 0.13 6.28 5.29 71.98 0.38 6.66 16 14 C 0.00 0.01 1.62 -52.93 -0.09 -0.07 16 15 C -0.50 -28.20 8.75 25.60 0.22 -27.98 16 16 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 17 C 0.02 1.20 5.44 84.65 0.46 1.66 16 18 N -0.91 -53.25 12.86 21.45 0.28 -52.98 16 19 Si 0.95 44.67 29.54 68.60 2.03 46.70 16 20 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 23 C -0.17 -7.39 9.95 30.59 0.30 -7.09 16 24 C -0.15 -6.84 9.39 30.59 0.29 -6.55 16 25 C 0.03 0.82 7.25 22.45 0.16 0.98 16 26 F -0.15 -4.95 16.41 44.97 0.74 -4.21 16 27 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 28 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.47 7.66 -2.38 -0.02 0.45 16 30 H 0.17 1.07 6.30 -2.91 -0.02 1.05 16 31 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 32 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.06 1.86 7.75 -2.38 -0.02 1.84 16 34 H 0.10 2.26 8.01 -2.39 -0.02 2.24 16 35 H 0.14 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.04 1.98 8.13 -2.39 -0.02 1.97 16 38 H 0.05 2.39 8.08 -2.39 -0.02 2.37 16 39 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 41 H 0.09 3.44 8.14 -2.38 -0.02 3.42 16 42 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 43 H 0.07 3.50 8.14 -2.38 -0.02 3.48 16 Total: -1.00 -73.52 375.46 7.32 -66.20 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.01 Total: 13.62 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 4.41 Total: -21.39 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.28 Total: -52.98 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -1.14 Total: -47.93 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.74 Total: -4.21 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -73.52 7.32 -66.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797075385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.165 kcal (2) G-P(sol) polarization free energy of solvation -73.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds