Wall clock time and date at job start Tue Mar 31 2020 13:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47239 * 270.00257 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00129 * 175.14052 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21590 * 120.00303 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99745 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47293 * 179.97438 * 15 14 12 17 17 H 1.09006 * 109.46845 * 59.99947 * 16 15 14 18 18 O 1.42902 * 109.46933 * 300.00527 * 16 15 14 19 19 C 1.50692 * 109.47464 * 179.97438 * 16 15 14 20 20 C 1.38251 * 119.97198 * 84.72525 * 19 16 15 21 21 C 1.38201 * 120.02196 * 179.72547 * 20 19 16 22 22 C 1.38455 * 119.97474 * 0.53004 * 21 20 19 23 23 F 1.35101 * 120.02237 * 179.72360 * 22 21 20 24 24 C 1.38458 * 119.95130 * 359.74907 * 22 21 20 25 25 C 1.38195 * 119.97229 * 359.97438 * 24 22 21 26 26 C 1.53000 * 117.49749 * 129.25937 * 9 7 2 27 27 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 28 28 H 0.96997 * 120.00397 * 4.99464 * 1 2 3 29 29 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 30 30 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 31 31 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 32 32 H 0.96991 * 120.00475 * 0.02562 * 14 12 11 33 33 H 1.08997 * 109.46910 * 300.00341 * 15 14 12 34 34 H 1.09000 * 109.46842 * 59.99932 * 15 14 12 35 35 H 0.96703 * 113.99730 * 299.99094 * 18 16 15 36 36 H 1.08003 * 119.98913 * 359.97438 * 20 19 16 37 37 H 1.07997 * 120.00994 * 180.29678 * 21 20 19 38 38 H 1.07998 * 120.01337 * 179.97438 * 24 22 21 39 39 H 1.08001 * 119.98753 * 180.02562 * 25 24 22 40 40 H 1.08997 * 117.50142 * 359.97438 * 26 9 7 41 41 H 1.09000 * 117.49511 * 145.02011 * 26 9 7 42 42 H 1.08996 * 117.49909 * 214.98045 * 27 9 7 43 43 H 1.09006 * 117.50020 * 359.97109 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1957 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0296 -3.9814 4.0153 14 7 3.2456 -4.0320 4.1593 15 6 3.1885 -4.5908 5.5123 16 6 4.6099 -4.8022 6.0373 17 1 5.1344 -3.8469 6.0606 18 8 5.3057 -5.7068 5.1772 19 6 4.5512 -5.3764 7.4293 20 6 4.4182 -6.7408 7.6085 21 6 4.3699 -7.2691 8.8847 22 6 4.4438 -6.4304 9.9838 23 9 4.3911 -6.9453 11.2317 24 6 4.5712 -5.0636 9.8031 25 6 4.6250 -4.5381 8.5261 26 6 1.5730 -3.5795 -0.9303 27 6 0.2452 -2.8210 -1.0000 28 1 -0.4850 0.8368 -0.0731 29 1 0.3751 -2.1632 2.0411 30 1 0.3015 -3.8512 1.4812 31 1 3.0164 -3.0733 1.8316 32 1 4.1039 -3.8565 3.7429 33 1 2.6573 -3.9010 6.1682 34 1 2.6643 -5.5462 5.4890 35 1 4.8943 -6.5792 5.1085 36 1 4.3560 -7.3944 6.7510 37 1 4.2709 -8.3354 9.0245 38 1 4.6284 -4.4084 10.6597 39 1 4.7247 -3.4720 8.3848 40 1 2.3245 -3.3491 -1.6853 41 1 1.5428 -4.6172 -0.5978 42 1 -0.6578 -3.3599 -0.7135 43 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797562978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:47 Heat of formation + Delta-G solvation = -79.857788 kcal Electronic energy + Delta-G solvation = -26009.718359 eV Core-core repulsion = 21969.993478 eV Total energy + Delta-G solvation = -4039.724881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.26753 -40.20059 -39.27399 -37.37658 -36.66418 -34.05701 -33.24893 -31.96698 -31.79890 -31.45691 -28.27251 -26.10114 -25.08842 -23.68801 -23.36722 -21.60089 -21.17018 -20.29376 -19.38828 -18.34818 -17.84425 -17.43746 -16.99371 -16.31132 -15.96255 -15.60434 -15.49244 -15.31671 -14.77070 -14.60784 -14.51709 -14.02740 -13.94535 -13.76292 -13.51923 -13.28239 -13.15896 -12.67615 -12.65296 -12.53487 -11.74486 -11.61908 -11.55336 -11.38102 -10.99994 -10.94105 -10.61167 -10.53505 -10.23017 -9.76948 -9.55885 -9.46249 -9.04422 -9.01815 -8.90910 -8.48323 -8.23484 -7.99420 -6.07200 -4.16891 0.64290 0.78493 2.98891 3.22233 3.25065 3.33309 3.34484 3.75233 3.83282 4.03319 4.20661 4.24939 4.34830 4.43422 4.59972 4.73515 4.81373 4.89460 5.03393 5.20711 5.38604 5.41285 5.49089 5.58701 5.65127 5.68250 5.77044 6.03276 6.04066 6.35634 6.41741 6.48413 6.59416 6.68448 6.71774 6.85266 7.12869 7.18823 7.31108 7.41934 7.45301 7.61614 7.81288 8.34497 8.64073 8.84389 9.17233 9.50050 10.99963 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020805 B = 0.002263 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.537973 B =12370.406951 C =12916.042568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.182 3.818 11 N -0.719 5.719 12 C 0.698 3.302 13 O -0.606 6.606 14 N -0.750 5.750 15 C 0.116 3.884 16 C 0.139 3.861 17 H 0.118 0.882 18 O -0.549 6.549 19 C -0.123 4.123 20 C -0.079 4.079 21 C -0.150 4.150 22 C 0.098 3.902 23 F -0.140 7.140 24 C -0.151 4.151 25 C -0.076 4.076 26 C -0.210 4.210 27 C -0.142 4.142 28 H 0.261 0.739 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.397 0.603 32 H 0.399 0.601 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.376 0.624 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.970 -12.128 15.707 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.023 3.977 10 C 0.058 3.942 11 N -0.372 5.372 12 C 0.397 3.603 13 O -0.485 6.485 14 N -0.408 5.408 15 C -0.010 4.010 16 C 0.079 3.921 17 H 0.135 0.865 18 O -0.354 6.354 19 C -0.125 4.125 20 C -0.097 4.097 21 C -0.169 4.169 22 C 0.079 3.921 23 F -0.119 7.119 24 C -0.170 4.170 25 C -0.094 4.094 26 C -0.248 4.248 27 C -0.180 4.180 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.231 0.769 32 H 0.233 0.767 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.225 0.775 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.156 -11.694 16.209 22.419 hybrid contribution 0.705 0.581 -0.015 0.914 sum 10.861 -11.112 16.195 22.444 Atomic orbital electron populations 1.69988 1.05870 1.26849 1.48355 1.24993 0.94826 0.98962 0.94367 0.86621 0.79904 0.83579 0.78062 1.20729 1.21216 1.19830 1.20340 0.92590 0.88584 1.52130 0.92243 1.19052 0.99375 0.93289 0.85960 1.20856 0.83249 0.97677 0.92376 1.45150 1.11322 1.66518 1.14160 1.16038 0.83794 0.78797 0.81646 1.90876 1.27923 1.60749 1.68987 1.44929 1.08068 1.70923 1.16849 1.21720 0.95593 0.99827 0.83831 1.21058 0.92568 0.93707 0.84728 0.86450 1.86651 1.54319 1.26884 1.67596 1.20472 1.01701 0.94200 0.96089 1.20759 0.97658 0.94575 0.96730 1.21122 1.03584 1.00528 0.91663 1.17773 1.02546 0.92253 0.79514 1.91511 1.93779 1.87481 1.39099 1.21169 1.03452 0.93475 0.98877 1.20904 0.97315 1.00348 0.90872 1.23009 1.00670 0.95605 1.05495 1.22467 0.90813 1.01320 1.03433 0.92885 0.91739 0.94420 0.76902 0.76706 0.90737 0.91488 0.77505 0.84919 0.84488 0.84443 0.84478 0.90437 0.91732 0.91809 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.17 12.65 55.43 0.70 -23.47 16 2 C 0.07 1.91 5.43 -17.82 -0.10 1.82 16 3 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.50 -12.71 8.59 -34.44 -0.30 -13.01 16 8 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 10 C 0.18 4.13 5.50 -4.04 -0.02 4.11 16 11 N -0.72 -13.86 5.48 -65.22 -0.36 -14.21 16 12 C 0.70 13.00 8.57 -86.91 -0.74 12.26 16 13 O -0.61 -13.68 16.34 5.29 0.09 -13.59 16 14 N -0.75 -10.04 5.45 -65.22 -0.36 -10.39 16 15 C 0.12 1.27 5.32 -4.04 -0.02 1.25 16 16 C 0.14 1.11 3.29 -27.89 -0.09 1.02 16 17 H 0.12 0.88 8.05 -51.93 -0.42 0.46 16 18 O -0.55 -4.50 12.88 -35.23 -0.45 -4.96 16 19 C -0.12 -0.95 5.00 -104.62 -0.52 -1.47 16 20 C -0.08 -0.56 9.33 -39.59 -0.37 -0.93 16 21 C -0.15 -1.13 10.03 -39.52 -0.40 -1.52 16 22 C 0.10 0.85 7.30 -39.42 -0.29 0.56 16 23 F -0.14 -1.33 17.27 2.25 0.04 -1.30 16 24 C -0.15 -1.16 10.03 -39.52 -0.40 -1.55 16 25 C -0.08 -0.56 9.68 -39.59 -0.38 -0.94 16 26 C -0.21 -4.37 9.96 -26.69 -0.27 -4.63 16 27 C -0.14 -3.25 9.14 -26.70 -0.24 -3.50 16 28 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 29 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 30 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 31 H 0.40 6.98 8.35 -40.82 -0.34 6.64 16 32 H 0.40 4.55 8.36 -40.82 -0.34 4.21 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.38 2.06 7.40 45.56 0.34 2.40 16 36 H 0.13 0.63 6.62 -52.48 -0.35 0.28 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -31.80 373.75 -9.40 -41.20 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -5.30 Total: 11.89 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -4.37 Total: -6.21 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.01 Total: -48.07 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.37 Total: -18.55 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.80 -9.40 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.660 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds