Wall clock time and date at job start Tue Mar 31 2020 13:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47239 * 270.00257 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00129 * 175.14052 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21590 * 120.00303 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99745 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47293 * 179.97438 * 15 14 12 17 17 H 1.09006 * 109.46845 * 59.99947 * 16 15 14 18 18 O 1.42902 * 109.46933 * 300.00527 * 16 15 14 19 19 C 1.50692 * 109.47464 * 179.97438 * 16 15 14 20 20 C 1.38251 * 119.97198 * 84.72525 * 19 16 15 21 21 C 1.38201 * 120.02196 * 179.72547 * 20 19 16 22 22 C 1.38455 * 119.97474 * 0.53004 * 21 20 19 23 23 F 1.35101 * 120.02237 * 179.72360 * 22 21 20 24 24 C 1.38458 * 119.95130 * 359.74907 * 22 21 20 25 25 C 1.38195 * 119.97229 * 359.97438 * 24 22 21 26 26 C 1.53000 * 117.49749 * 129.25937 * 9 7 2 27 27 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 28 28 H 0.96997 * 120.00397 * 4.99464 * 1 2 3 29 29 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 30 30 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 31 31 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 32 32 H 0.96991 * 120.00475 * 0.02562 * 14 12 11 33 33 H 1.08997 * 109.46910 * 300.00341 * 15 14 12 34 34 H 1.09000 * 109.46842 * 59.99932 * 15 14 12 35 35 H 0.96703 * 113.99730 * 299.99094 * 18 16 15 36 36 H 1.08003 * 119.98913 * 359.97438 * 20 19 16 37 37 H 1.07997 * 120.00994 * 180.29678 * 21 20 19 38 38 H 1.07998 * 120.01337 * 179.97438 * 24 22 21 39 39 H 1.08001 * 119.98753 * 180.02562 * 25 24 22 40 40 H 1.08997 * 117.50142 * 359.97438 * 26 9 7 41 41 H 1.09000 * 117.49511 * 145.02011 * 26 9 7 42 42 H 1.08996 * 117.49909 * 214.98045 * 27 9 7 43 43 H 1.09006 * 117.50020 * 359.97109 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1957 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0296 -3.9814 4.0153 14 7 3.2456 -4.0320 4.1593 15 6 3.1885 -4.5908 5.5123 16 6 4.6099 -4.8022 6.0373 17 1 5.1344 -3.8469 6.0606 18 8 5.3057 -5.7068 5.1772 19 6 4.5512 -5.3764 7.4293 20 6 4.4182 -6.7408 7.6085 21 6 4.3699 -7.2691 8.8847 22 6 4.4438 -6.4304 9.9838 23 9 4.3911 -6.9453 11.2317 24 6 4.5712 -5.0636 9.8031 25 6 4.6250 -4.5381 8.5261 26 6 1.5730 -3.5795 -0.9303 27 6 0.2452 -2.8210 -1.0000 28 1 -0.4850 0.8368 -0.0731 29 1 0.3751 -2.1632 2.0411 30 1 0.3015 -3.8512 1.4812 31 1 3.0164 -3.0733 1.8316 32 1 4.1039 -3.8565 3.7429 33 1 2.6573 -3.9010 6.1682 34 1 2.6643 -5.5462 5.4890 35 1 4.8943 -6.5792 5.1085 36 1 4.3560 -7.3944 6.7510 37 1 4.2709 -8.3354 9.0245 38 1 4.6284 -4.4084 10.6597 39 1 4.7247 -3.4720 8.3848 40 1 2.3245 -3.3491 -1.6853 41 1 1.5428 -4.6172 -0.5978 42 1 -0.6578 -3.3599 -0.7135 43 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797562978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:47 Heat of formation + Delta-G solvation = -101.780357 kcal Electronic energy + Delta-G solvation = -26010.668993 eV Core-core repulsion = 21969.993478 eV Total energy + Delta-G solvation = -4040.675515 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.93294 -41.12499 -40.41686 -38.59226 -37.92335 -35.22984 -34.86981 -33.92259 -32.47002 -32.02779 -29.29422 -27.81300 -26.78027 -24.49137 -23.99794 -22.91502 -22.27524 -21.70915 -21.21133 -19.27344 -18.95657 -18.30916 -17.90369 -17.63508 -16.87845 -16.72466 -16.61984 -16.51988 -16.12616 -15.82952 -15.58094 -15.34659 -14.98539 -14.83453 -14.48814 -14.36041 -14.21331 -13.81200 -13.80562 -13.45739 -13.29730 -13.19157 -12.90639 -12.79541 -12.34744 -12.24450 -11.99523 -11.94248 -11.46650 -11.33880 -11.16270 -10.92656 -10.42172 -10.28228 -10.09549 -10.00858 -9.63147 -9.56731 -8.06768 -6.20798 0.04252 0.24677 1.43734 1.46634 1.54459 1.82354 2.26458 2.44300 2.53532 3.21114 3.23812 3.32369 3.42532 3.58802 3.72032 3.75313 3.84486 3.97867 4.11529 4.27776 4.29727 4.39435 4.58883 4.68149 4.71563 4.77480 4.83537 4.92734 4.95357 5.02407 5.05949 5.13177 5.21046 5.31834 5.45700 5.52370 5.59229 5.65838 5.75472 5.81428 5.86325 6.17711 6.39718 6.69627 6.86848 7.26450 7.48734 7.70772 9.00204 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020805 B = 0.002263 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.537973 B =12370.406951 C =12916.042568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.263 1.263 7 C -0.502 4.502 8 H 0.065 0.935 9 C 0.003 3.997 10 C 0.200 3.800 11 N -0.715 5.715 12 C 0.695 3.305 13 O -0.647 6.647 14 N -0.728 5.728 15 C 0.114 3.886 16 C 0.157 3.843 17 H 0.127 0.873 18 O -0.556 6.556 19 C -0.131 4.131 20 C -0.081 4.081 21 C -0.156 4.156 22 C 0.077 3.923 23 F -0.150 7.150 24 C -0.158 4.158 25 C -0.081 4.081 26 C -0.176 4.176 27 C -0.155 4.155 28 H 0.258 0.742 29 H 0.022 0.978 30 H 0.035 0.965 31 H 0.407 0.593 32 H 0.412 0.588 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.389 0.611 36 H 0.156 0.844 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.140 -12.821 15.764 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.187 1.187 7 C -0.540 4.540 8 H 0.083 0.917 9 C 0.002 3.998 10 C 0.075 3.925 11 N -0.368 5.368 12 C 0.395 3.605 13 O -0.531 6.531 14 N -0.385 5.385 15 C -0.011 4.011 16 C 0.097 3.903 17 H 0.145 0.855 18 O -0.364 6.364 19 C -0.132 4.132 20 C -0.099 4.099 21 C -0.175 4.175 22 C 0.058 3.942 23 F -0.129 7.129 24 C -0.177 4.177 25 C -0.099 4.099 26 C -0.213 4.213 27 C -0.193 4.193 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.243 0.757 32 H 0.249 0.751 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.239 0.761 36 H 0.173 0.827 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.172 0.828 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.404 -12.410 16.273 23.931 hybrid contribution 0.041 0.730 -0.005 0.732 sum 12.445 -11.680 16.268 23.578 Atomic orbital electron populations 1.70116 1.07267 1.27247 1.49989 1.25720 0.95486 1.02119 0.94502 0.85679 0.78927 0.79754 0.78028 1.20350 1.21981 1.18680 1.20666 0.92972 0.89475 1.50841 0.91712 1.19077 1.00177 0.93967 0.86541 1.20392 0.84252 0.95973 0.91931 1.44912 1.10607 1.66801 1.14526 1.16196 0.84454 0.78479 0.81367 1.90850 1.29975 1.62422 1.69804 1.44764 1.07021 1.69447 1.17303 1.21904 0.97801 0.99213 0.82151 1.20850 0.90464 0.94287 0.84652 0.85542 1.86638 1.54457 1.27737 1.67539 1.20515 1.02195 0.94620 0.95845 1.21053 0.96790 0.94770 0.97311 1.21351 1.03247 1.01297 0.91580 1.18084 1.03588 0.93001 0.79487 1.91481 1.93990 1.87656 1.39774 1.21371 1.03277 0.93414 0.99616 1.21150 0.96807 1.01308 0.90629 1.22989 0.98805 0.95920 1.03588 1.22392 0.92163 1.01842 1.02904 0.93280 0.95954 0.94696 0.75731 0.75132 0.91714 0.91658 0.76076 0.82676 0.83110 0.83262 0.82832 0.89654 0.89416 0.91310 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.14 12.65 21.45 0.27 -50.87 16 2 C 0.02 1.17 5.43 84.65 0.46 1.63 16 3 Si 0.95 41.76 29.54 68.60 2.03 43.79 16 4 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.50 -25.23 8.59 25.60 0.22 -25.01 16 8 H 0.06 3.12 7.82 -2.91 -0.02 3.10 16 9 C 0.00 0.15 1.47 -52.93 -0.08 0.07 16 10 C 0.20 9.10 5.50 86.38 0.48 9.57 16 11 N -0.72 -26.88 5.48 -478.52 -2.62 -29.51 16 12 C 0.70 25.29 8.57 179.05 1.53 26.82 16 13 O -0.65 -29.28 16.34 -4.00 -0.07 -29.34 16 14 N -0.73 -18.09 5.45 -478.52 -2.61 -20.70 16 15 C 0.11 2.29 5.32 86.38 0.46 2.75 16 16 C 0.16 2.12 3.29 29.84 0.10 2.22 16 17 H 0.13 1.52 8.05 -2.38 -0.02 1.50 16 18 O -0.56 -7.43 12.88 -148.98 -1.92 -9.35 16 19 C -0.13 -1.73 5.00 -19.86 -0.10 -1.83 16 20 C -0.08 -0.97 9.33 22.26 0.21 -0.76 16 21 C -0.16 -2.12 10.03 22.31 0.22 -1.90 16 22 C 0.08 1.27 7.30 22.37 0.16 1.43 16 23 F -0.15 -2.82 17.27 44.97 0.78 -2.05 16 24 C -0.16 -2.25 10.03 22.31 0.22 -2.02 16 25 C -0.08 -1.05 9.68 22.26 0.22 -0.83 16 26 C -0.18 -6.93 9.96 30.62 0.30 -6.63 16 27 C -0.15 -7.06 9.14 30.62 0.28 -6.78 16 28 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 29 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.03 1.59 8.09 -2.38 -0.02 1.57 16 31 H 0.41 13.57 8.35 -92.71 -0.77 12.80 16 32 H 0.41 8.27 8.36 -92.71 -0.78 7.50 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.39 3.03 7.40 -74.06 -0.55 2.48 16 36 H 0.16 1.03 6.62 -2.91 -0.02 1.01 16 37 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 38 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 39 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 43 H 0.06 3.22 8.14 -2.38 -0.02 3.20 16 Total: -1.00 -68.64 373.75 -0.49 -69.13 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: -1.03 Total: 30.16 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 4.69 Total: -1.26 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -4.96 Total: -101.08 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -1.98 Total: -38.70 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -68.64 -0.49 -69.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.647 kcal (2) G-P(sol) polarization free energy of solvation -68.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds