Wall clock time and date at job start Tue Mar 31 2020 13:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21582 * 119.99693 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00034 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00194 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47267 * 180.02562 * 15 14 12 17 17 H 1.08996 * 109.47273 * 304.99631 * 16 15 14 18 18 O 1.42900 * 109.47309 * 65.00365 * 16 15 14 19 19 C 1.50705 * 109.46990 * 185.00168 * 16 15 14 20 20 C 1.38224 * 120.01239 * 264.99951 * 19 16 15 21 21 C 1.38218 * 120.02426 * 179.97438 * 20 19 16 22 22 C 1.38262 * 120.05617 * 0.02562 * 21 20 19 23 23 C 1.38178 * 120.02437 * 0.02562 * 22 21 20 24 24 C 1.38437 * 120.01554 * 84.71955 * 19 16 15 25 25 F 1.35102 * 120.02143 * 0.02562 * 24 19 16 26 26 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 27 27 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 28 28 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 29 29 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 30 30 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 31 31 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 32 32 H 0.97004 * 120.00199 * 0.02562 * 14 12 11 33 33 H 1.09007 * 109.47147 * 300.00790 * 15 14 12 34 34 H 1.09003 * 109.46836 * 59.99708 * 15 14 12 35 35 H 0.96694 * 113.99937 * 59.99672 * 18 16 15 36 36 H 1.08002 * 119.98317 * 359.95253 * 20 19 16 37 37 H 1.08002 * 119.97125 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.99106 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.01309 * 179.97438 * 23 22 21 40 40 H 1.09003 * 117.50034 * 359.97438 * 26 9 7 41 41 H 1.09002 * 117.49971 * 145.02730 * 26 9 7 42 42 H 1.08996 * 117.49810 * 214.97781 * 27 9 7 43 43 H 1.08995 * 117.50078 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0293 -3.9781 4.0184 14 7 3.2451 -4.0287 4.1627 15 6 3.1879 -4.5864 5.5162 16 6 4.6093 -4.7963 6.0419 17 1 5.1686 -5.4151 5.3402 18 8 5.2572 -3.5303 6.1818 19 6 4.5530 -5.4826 7.3824 20 6 4.5877 -4.7345 8.5441 21 6 4.5354 -5.3637 9.7737 22 6 4.4490 -6.7418 9.8432 23 6 4.4152 -7.4919 8.6832 24 6 4.4606 -6.8622 7.4507 25 9 4.4214 -7.5941 6.3157 26 6 1.5730 -3.5803 -0.9273 27 6 0.2453 -2.8218 -0.9979 28 1 -0.4850 0.8369 -0.0732 29 1 0.3749 -2.1616 2.0428 30 1 0.3013 -3.8500 1.4840 31 1 3.0162 -3.0718 1.8342 32 1 4.1035 -3.8536 3.7463 33 1 2.6567 -3.8961 6.1715 34 1 2.6637 -5.5419 5.4936 35 1 4.8131 -2.9267 6.7930 36 1 4.6560 -3.6579 8.4910 37 1 4.5630 -4.7783 10.6809 38 1 4.4086 -7.2324 10.8045 39 1 4.3481 -8.5684 8.7377 40 1 2.3246 -3.3504 -1.6826 41 1 1.5428 -4.6177 -0.5940 42 1 -0.6578 -3.3605 -0.7110 43 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797565680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:50 Heat of formation + Delta-G solvation = -77.650870 kcal Electronic energy + Delta-G solvation = -26428.983527 eV Core-core repulsion = 22389.354345 eV Total energy + Delta-G solvation = -4039.629182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.24063 -40.05440 -39.24977 -37.48646 -36.65525 -34.05308 -33.22042 -32.03507 -31.91591 -30.97890 -28.45131 -26.12459 -25.11124 -23.72284 -23.06107 -21.68609 -21.14907 -20.27067 -19.36540 -18.39957 -17.82969 -17.23384 -17.01019 -16.32502 -15.93534 -15.62589 -15.54701 -15.22520 -14.72338 -14.64202 -14.45426 -14.28358 -13.92753 -13.65247 -13.53882 -13.21049 -12.83162 -12.66238 -12.53672 -12.40984 -11.79123 -11.69148 -11.53386 -11.47257 -10.95171 -10.93775 -10.60992 -10.52945 -10.20871 -9.74073 -9.46149 -9.40203 -9.07090 -9.01751 -8.87647 -8.45901 -8.21418 -7.96585 -6.05045 -4.14749 0.68484 0.76713 3.03510 3.23065 3.28365 3.34140 3.35618 3.78018 3.83248 4.01395 4.14392 4.31709 4.36860 4.49024 4.61503 4.75472 4.85092 4.92536 5.01269 5.22808 5.35998 5.41046 5.54101 5.58365 5.66900 5.74098 5.90781 5.95326 6.06437 6.37955 6.43083 6.50798 6.62037 6.71285 6.74060 6.87666 7.14890 7.20636 7.34058 7.44227 7.47643 7.64033 7.83290 8.36764 8.66947 8.86337 9.20277 9.52116 11.02146 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.002563 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.079682 B =10922.267131 C =11703.137861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.182 3.818 11 N -0.719 5.719 12 C 0.698 3.302 13 O -0.605 6.605 14 N -0.749 5.749 15 C 0.119 3.881 16 C 0.140 3.860 17 H 0.118 0.882 18 O -0.546 6.546 19 C -0.149 4.149 20 C -0.081 4.081 21 C -0.127 4.127 22 C -0.090 4.090 23 C -0.153 4.153 24 C 0.110 3.890 25 F -0.134 7.134 26 C -0.211 4.211 27 C -0.142 4.142 28 H 0.262 0.738 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.397 0.603 32 H 0.398 0.602 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.377 0.623 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.905 -11.759 18.332 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.024 3.976 10 C 0.059 3.941 11 N -0.372 5.372 12 C 0.398 3.602 13 O -0.485 6.485 14 N -0.407 5.407 15 C -0.007 4.007 16 C 0.080 3.920 17 H 0.136 0.864 18 O -0.352 6.352 19 C -0.150 4.150 20 C -0.099 4.099 21 C -0.145 4.145 22 C -0.108 4.108 23 C -0.171 4.171 24 C 0.091 3.909 25 F -0.112 7.112 26 C -0.248 4.248 27 C -0.180 4.180 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.231 0.769 32 H 0.232 0.768 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.226 0.774 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.103 -12.100 18.375 24.210 hybrid contribution 0.735 1.128 -0.181 1.359 sum 10.838 -10.971 18.193 23.850 Atomic orbital electron populations 1.69980 1.05873 1.26947 1.48300 1.24987 0.94821 0.98941 0.94348 0.86685 0.79639 0.83194 0.78610 1.20322 1.21308 1.20149 1.20309 0.92572 0.88615 1.52226 0.92289 1.19042 0.99363 0.93262 0.85957 1.20855 0.83254 0.97677 0.92363 1.45143 1.11320 1.66576 1.14113 1.16023 0.83768 0.78765 0.81648 1.90869 1.27896 1.60719 1.69034 1.44918 1.08072 1.70999 1.16672 1.21675 0.95340 0.99860 0.83811 1.20935 0.93571 0.85210 0.92295 0.86395 1.86658 1.54547 1.25225 1.68763 1.20473 1.04649 0.92536 0.97380 1.20822 0.97685 1.00270 0.91103 1.21207 1.00630 0.94783 0.97883 1.21073 0.97822 0.93953 0.97992 1.21189 1.03643 1.01248 0.91051 1.17495 1.02379 0.88553 0.82479 1.91532 1.93609 1.77073 1.48988 1.23015 1.00673 0.95621 1.05501 1.22466 0.90805 1.01313 1.03422 0.92834 0.91747 0.94422 0.76913 0.76769 0.91292 0.90924 0.77374 0.84811 0.85032 0.84871 0.84488 0.90439 0.91726 0.91814 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.44 12.65 55.43 0.70 -23.74 16 2 C 0.07 1.95 5.43 -17.82 -0.10 1.86 16 3 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.50 -12.95 8.59 -34.44 -0.30 -13.24 16 8 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 9 C 0.02 0.59 1.47 -155.66 -0.23 0.36 16 10 C 0.18 4.23 5.50 -4.05 -0.02 4.21 16 11 N -0.72 -14.39 5.48 -65.23 -0.36 -14.74 16 12 C 0.70 13.67 8.57 -86.91 -0.74 12.93 16 13 O -0.61 -14.18 16.34 5.29 0.09 -14.10 16 14 N -0.75 -10.98 5.51 -65.22 -0.36 -11.34 16 15 C 0.12 1.49 5.29 -4.05 -0.02 1.47 16 16 C 0.14 1.38 3.01 -27.88 -0.08 1.30 16 17 H 0.12 1.19 7.80 -51.93 -0.41 0.79 16 18 O -0.55 -5.23 12.94 -35.23 -0.46 -5.69 16 19 C -0.15 -1.36 5.07 -104.55 -0.53 -1.89 16 20 C -0.08 -0.59 9.30 -39.59 -0.37 -0.96 16 21 C -0.13 -0.79 10.04 -39.58 -0.40 -1.19 16 22 C -0.09 -0.56 10.04 -39.59 -0.40 -0.96 16 23 C -0.15 -1.17 10.03 -39.51 -0.40 -1.57 16 24 C 0.11 1.07 7.24 -39.42 -0.29 0.78 16 25 F -0.13 -1.48 16.57 2.25 0.04 -1.44 16 26 C -0.21 -4.47 9.96 -26.69 -0.27 -4.74 16 27 C -0.14 -3.30 9.14 -26.69 -0.24 -3.54 16 28 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 29 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 30 H 0.04 0.87 8.09 -51.92 -0.42 0.45 16 31 H 0.40 7.26 8.34 -40.82 -0.34 6.92 16 32 H 0.40 5.01 8.49 -40.82 -0.35 4.66 16 33 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.38 2.51 7.32 45.56 0.33 2.84 16 36 H 0.13 0.69 6.41 -52.49 -0.34 0.36 16 37 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -32.31 372.81 -9.42 -41.73 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -5.29 Total: 13.20 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -4.38 Total: -5.19 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.02 Total: -49.82 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.37 Total: -19.78 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.31 -9.42 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.920 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds