Wall clock time and date at job start Tue Mar 31 2020 13:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21582 * 119.99693 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00034 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00194 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47267 * 180.02562 * 15 14 12 17 17 H 1.08996 * 109.47273 * 304.99631 * 16 15 14 18 18 O 1.42900 * 109.47309 * 65.00365 * 16 15 14 19 19 C 1.50705 * 109.46990 * 185.00168 * 16 15 14 20 20 C 1.38224 * 120.01239 * 264.99951 * 19 16 15 21 21 C 1.38218 * 120.02426 * 179.97438 * 20 19 16 22 22 C 1.38262 * 120.05617 * 0.02562 * 21 20 19 23 23 C 1.38178 * 120.02437 * 0.02562 * 22 21 20 24 24 C 1.38437 * 120.01554 * 84.71955 * 19 16 15 25 25 F 1.35102 * 120.02143 * 0.02562 * 24 19 16 26 26 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 27 27 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 28 28 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 29 29 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 30 30 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 31 31 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 32 32 H 0.97004 * 120.00199 * 0.02562 * 14 12 11 33 33 H 1.09007 * 109.47147 * 300.00790 * 15 14 12 34 34 H 1.09003 * 109.46836 * 59.99708 * 15 14 12 35 35 H 0.96694 * 113.99937 * 59.99672 * 18 16 15 36 36 H 1.08002 * 119.98317 * 359.95253 * 20 19 16 37 37 H 1.08002 * 119.97125 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.99106 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.01309 * 179.97438 * 23 22 21 40 40 H 1.09003 * 117.50034 * 359.97438 * 26 9 7 41 41 H 1.09002 * 117.49971 * 145.02730 * 26 9 7 42 42 H 1.08996 * 117.49810 * 214.97781 * 27 9 7 43 43 H 1.08995 * 117.50078 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0293 -3.9781 4.0184 14 7 3.2451 -4.0287 4.1627 15 6 3.1879 -4.5864 5.5162 16 6 4.6093 -4.7963 6.0419 17 1 5.1686 -5.4151 5.3402 18 8 5.2572 -3.5303 6.1818 19 6 4.5530 -5.4826 7.3824 20 6 4.5877 -4.7345 8.5441 21 6 4.5354 -5.3637 9.7737 22 6 4.4490 -6.7418 9.8432 23 6 4.4152 -7.4919 8.6832 24 6 4.4606 -6.8622 7.4507 25 9 4.4214 -7.5941 6.3157 26 6 1.5730 -3.5803 -0.9273 27 6 0.2453 -2.8218 -0.9979 28 1 -0.4850 0.8369 -0.0732 29 1 0.3749 -2.1616 2.0428 30 1 0.3013 -3.8500 1.4840 31 1 3.0162 -3.0718 1.8342 32 1 4.1035 -3.8536 3.7463 33 1 2.6567 -3.8961 6.1715 34 1 2.6637 -5.5419 5.4936 35 1 4.8131 -2.9267 6.7930 36 1 4.6560 -3.6579 8.4910 37 1 4.5630 -4.7783 10.6809 38 1 4.4086 -7.2324 10.8045 39 1 4.3481 -8.5684 8.7377 40 1 2.3246 -3.3504 -1.6826 41 1 1.5428 -4.6177 -0.5940 42 1 -0.6578 -3.3605 -0.7110 43 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797565680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:49 Heat of formation + Delta-G solvation = -100.258645 kcal Electronic energy + Delta-G solvation = -26429.963874 eV Core-core repulsion = 22389.354345 eV Total energy + Delta-G solvation = -4040.609529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.97560 -41.13743 -40.35649 -38.64524 -38.09465 -35.34110 -34.91999 -33.93829 -32.71575 -31.53160 -29.51802 -27.87835 -26.86377 -24.68427 -23.65110 -22.93894 -22.43122 -21.77201 -21.23470 -19.34319 -19.07992 -18.26275 -17.81812 -17.71791 -16.97281 -16.77706 -16.62740 -16.51554 -16.27576 -15.81430 -15.64594 -15.25259 -15.18986 -14.93028 -14.72276 -14.37051 -14.19834 -13.92544 -13.50445 -13.42668 -13.31769 -12.96276 -12.92020 -12.78507 -12.37835 -12.34526 -12.15576 -12.01499 -11.53179 -11.40069 -11.21962 -10.93235 -10.44084 -10.34256 -10.04133 -9.97886 -9.67737 -9.62527 -8.07698 -6.22109 0.09866 0.21941 1.44402 1.46063 1.52307 1.75800 2.20263 2.43631 2.58558 3.18387 3.19891 3.23339 3.32700 3.50865 3.64577 3.73448 3.77822 3.96451 4.15183 4.25251 4.34329 4.37527 4.56407 4.58021 4.66532 4.72480 4.75217 4.87323 4.99416 5.03269 5.04632 5.17497 5.29596 5.32714 5.42612 5.45301 5.56527 5.62772 5.72306 5.79584 5.90154 6.10637 6.38185 6.59260 6.85041 7.19647 7.47421 7.64171 8.99184 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.002563 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.079682 B =10922.267131 C =11703.137861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.004 3.996 10 C 0.199 3.801 11 N -0.714 5.714 12 C 0.696 3.304 13 O -0.646 6.646 14 N -0.729 5.729 15 C 0.120 3.880 16 C 0.156 3.844 17 H 0.114 0.886 18 O -0.552 6.552 19 C -0.164 4.164 20 C -0.087 4.087 21 C -0.125 4.125 22 C -0.087 4.087 23 C -0.161 4.161 24 C 0.081 3.919 25 F -0.150 7.150 26 C -0.178 4.178 27 C -0.153 4.153 28 H 0.259 0.741 29 H 0.024 0.976 30 H 0.034 0.966 31 H 0.407 0.593 32 H 0.411 0.589 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.390 0.610 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.928 -11.928 19.908 26.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.003 3.997 10 C 0.074 3.926 11 N -0.368 5.368 12 C 0.396 3.604 13 O -0.529 6.529 14 N -0.386 5.386 15 C -0.005 4.005 16 C 0.096 3.904 17 H 0.132 0.868 18 O -0.360 6.360 19 C -0.166 4.166 20 C -0.105 4.105 21 C -0.143 4.143 22 C -0.105 4.105 23 C -0.179 4.179 24 C 0.062 3.938 25 F -0.128 7.128 26 C -0.215 4.215 27 C -0.191 4.191 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.243 0.757 32 H 0.248 0.752 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.241 0.759 36 H 0.171 0.829 37 H 0.177 0.823 38 H 0.180 0.820 39 H 0.167 0.833 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.198 -12.275 19.961 26.418 hybrid contribution 0.121 1.139 -0.573 1.281 sum 12.319 -11.136 19.388 25.528 Atomic orbital electron populations 1.70109 1.07254 1.27372 1.49799 1.25718 0.95502 1.02113 0.94389 0.85727 0.78357 0.79357 0.78841 1.19473 1.21742 1.19673 1.20634 0.92943 0.89530 1.51151 0.91817 1.19062 1.00239 0.93949 0.86454 1.20417 0.84140 0.96004 0.92006 1.44918 1.10723 1.66761 1.14358 1.16174 0.84338 0.78467 0.81441 1.90840 1.29852 1.62358 1.69849 1.44770 1.07169 1.69565 1.17118 1.21808 0.97420 0.98837 0.82455 1.20641 0.91353 0.85480 0.92881 0.86824 1.86635 1.54678 1.25311 1.69379 1.20453 1.06202 0.92490 0.97443 1.21153 0.97075 1.01326 0.90919 1.21609 0.99110 0.95130 0.98478 1.21480 0.96218 0.94163 0.98632 1.21458 1.03429 1.02202 0.90845 1.17859 1.04148 0.89007 0.82766 1.91483 1.93969 1.77462 1.49935 1.22995 0.98941 0.95880 1.03660 1.22392 0.92084 1.01779 1.02835 0.93204 0.95791 0.94746 0.75736 0.75229 0.91465 0.92318 0.75853 0.82860 0.82276 0.82004 0.83295 0.89628 0.89560 0.91290 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.65 12.65 21.45 0.27 -51.38 16 2 C 0.02 1.25 5.43 84.65 0.46 1.71 16 3 Si 0.95 42.39 29.54 68.60 2.03 44.42 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.50 -25.96 8.59 25.60 0.22 -25.74 16 8 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 9 C 0.00 0.18 1.47 -52.93 -0.08 0.10 16 10 C 0.20 9.39 5.50 86.38 0.48 9.86 16 11 N -0.71 -28.39 5.48 -478.55 -2.62 -31.01 16 12 C 0.70 27.24 8.57 179.05 1.53 28.78 16 13 O -0.65 -30.78 16.34 -3.97 -0.06 -30.84 16 14 N -0.73 -20.89 5.51 -478.54 -2.64 -23.53 16 15 C 0.12 2.98 5.29 86.38 0.46 3.43 16 16 C 0.16 2.97 3.01 29.85 0.09 3.06 16 17 H 0.11 2.25 7.80 -2.39 -0.02 2.23 16 18 O -0.55 -9.63 12.94 -148.98 -1.93 -11.56 16 19 C -0.16 -2.85 5.07 -19.82 -0.10 -2.95 16 20 C -0.09 -1.08 9.30 22.26 0.21 -0.88 16 21 C -0.13 -1.20 10.04 22.27 0.22 -0.97 16 22 C -0.09 -0.85 10.04 22.26 0.22 -0.63 16 23 C -0.16 -2.26 10.03 22.31 0.22 -2.04 16 24 C 0.08 1.55 7.24 22.38 0.16 1.71 16 25 F -0.15 -3.39 16.57 44.97 0.75 -2.65 16 26 C -0.18 -7.24 9.96 30.62 0.30 -6.93 16 27 C -0.15 -7.11 9.14 30.62 0.28 -6.83 16 28 H 0.26 14.24 8.32 -92.71 -0.77 13.46 16 29 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.03 1.62 8.09 -2.38 -0.02 1.60 16 31 H 0.41 14.44 8.34 -92.71 -0.77 13.66 16 32 H 0.41 9.79 8.49 -92.71 -0.79 9.00 16 33 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.39 4.38 7.32 -74.06 -0.54 3.83 16 36 H 0.15 1.18 6.41 -2.91 -0.02 1.16 16 37 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 38 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 39 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 41 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 43 H 0.07 3.33 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -70.38 372.81 -0.57 -70.94 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -1.04 Total: 33.94 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 4.68 Total: 1.67 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -4.99 Total: -105.93 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -1.99 Total: -42.40 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.75 Total: -2.65 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -70.38 -0.57 -70.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.318 kcal (2) G-P(sol) polarization free energy of solvation -70.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds