Wall clock time and date at job start Tue Mar 31 2020 13:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48503 * 109.47261 * 239.99803 * 3 2 1 5 5 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47297 * 119.99984 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47342 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46978 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46978 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47084 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99985 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99944 * 180.02562 * 13 12 11 16 16 N 1.40091 * 120.00001 * 180.02562 * 15 13 12 17 17 C 1.34777 * 120.00219 * 179.97438 * 16 15 13 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00161 * 179.97438 * 17 16 15 20 20 C 1.50701 * 109.47064 * 180.02562 * 19 17 16 21 21 C 1.38244 * 119.97486 * 269.72932 * 20 19 17 22 22 C 1.38202 * 120.02338 * 179.72838 * 21 20 19 23 23 C 1.38457 * 119.97200 * 0.56577 * 22 21 20 24 24 F 1.35099 * 120.02649 * 179.68648 * 23 22 21 25 25 C 1.38455 * 119.95159 * 359.70550 * 23 22 21 26 26 C 1.38200 * 119.97412 * 0.02562 * 25 23 22 27 27 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46752 * 59.99146 * 9 7 2 29 29 H 1.08998 * 109.46909 * 300.00133 * 9 7 2 30 30 H 1.09002 * 109.46777 * 60.00285 * 10 9 7 31 31 H 1.08992 * 109.46827 * 299.99848 * 10 9 7 32 32 H 1.09002 * 109.47097 * 60.00199 * 11 10 9 33 33 H 1.09001 * 109.47142 * 300.00234 * 11 10 9 34 34 H 1.09002 * 109.47045 * 60.00167 * 12 11 10 35 35 H 1.09001 * 109.47375 * 300.00092 * 12 11 10 36 36 H 0.97000 * 119.99708 * 359.97438 * 15 13 12 37 37 H 0.97005 * 120.00319 * 359.97438 * 16 15 13 38 38 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 39 39 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 40 40 H 1.07996 * 119.98449 * 359.97438 * 21 20 19 41 41 H 1.07995 * 120.01101 * 180.25281 * 22 21 20 42 42 H 1.08001 * 120.01453 * 179.97438 * 25 23 22 43 43 H 1.08008 * 119.98737 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0005 13 6 1.7211 -7.4551 0.0005 14 8 0.5084 -7.4551 0.0005 15 7 2.3951 -8.6223 0.0005 16 7 1.6946 -9.8355 0.0000 17 6 2.3685 -11.0028 -0.0005 18 8 3.5813 -11.0027 -0.0001 19 6 1.6150 -12.3079 -0.0005 20 6 2.5943 -13.4533 -0.0005 21 6 3.0389 -13.9820 -1.1980 22 6 3.9413 -15.0287 -1.1993 23 6 4.3911 -15.5556 -0.0005 24 9 5.2684 -16.5829 -0.0004 25 6 3.9409 -15.0290 1.1983 26 6 3.0427 -13.9786 1.1970 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5570 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8906 31 1 2.8720 -3.6043 -0.8894 32 1 0.8534 -5.0451 -0.8886 33 1 0.8540 -5.0445 0.8914 34 1 3.1019 -6.0922 0.8901 35 1 3.1007 -6.0923 -0.8899 36 1 3.3651 -8.6222 0.0002 37 1 0.7246 -9.8356 0.0000 38 1 0.9880 -12.3655 -0.8903 39 1 0.9887 -12.3658 0.8897 40 1 2.6839 -13.5742 -2.1329 41 1 4.2916 -15.4388 -2.1349 42 1 4.2907 -15.4394 2.1340 43 1 2.6911 -13.5679 2.1320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805153554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:46 Heat of formation + Delta-G solvation = -86.628288 kcal Electronic energy + Delta-G solvation = -24665.083415 eV Core-core repulsion = 20625.064943 eV Total energy + Delta-G solvation = -4040.018472 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.29911 -40.80711 -39.78330 -38.82007 -35.70549 -34.90449 -33.36057 -32.72390 -31.62016 -31.59466 -29.59892 -27.66643 -25.59952 -23.56209 -22.93561 -22.32768 -21.56408 -20.45935 -20.02879 -18.19542 -18.09627 -17.79088 -16.97367 -16.25627 -16.16350 -16.07607 -16.02077 -15.94667 -15.41078 -14.77344 -14.50084 -14.35370 -14.20557 -14.03321 -14.02583 -13.75235 -12.69110 -12.65143 -12.62163 -12.36181 -12.29026 -11.77097 -11.67446 -11.51406 -11.46680 -10.99987 -10.63885 -10.58851 -10.57068 -10.46057 -10.14898 -9.64868 -9.57033 -9.28064 -9.06460 -9.01903 -8.64393 -8.31679 -5.96724 -3.99385 0.58933 0.77370 1.58775 1.98097 2.53518 3.06884 3.34644 3.39159 3.41349 3.77444 3.80701 4.00200 4.17375 4.33963 4.42804 4.48104 4.56748 4.72719 4.77077 4.89249 5.02387 5.18837 5.24630 5.38712 5.40286 5.48381 5.65337 5.72093 5.73038 5.95815 6.06120 6.20146 6.35446 6.37335 6.43900 6.49414 6.77658 6.95595 7.15914 7.23462 7.58159 7.71639 7.86974 8.04039 8.11943 8.45827 9.08003 9.64420 11.14491 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.043784 B = 0.001443 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.344761 B =19400.985544 C =19714.192079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.103 4.103 12 C -0.128 4.128 13 C 0.515 3.485 14 O -0.535 6.535 15 N -0.532 5.532 16 N -0.524 5.524 17 C 0.512 3.488 18 O -0.532 6.532 19 C -0.091 4.091 20 C -0.079 4.079 21 C -0.073 4.073 22 C -0.152 4.152 23 C 0.099 3.901 24 F -0.141 7.141 25 C -0.152 4.152 26 C -0.073 4.073 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.431 0.569 37 H 0.432 0.568 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 -33.538 -0.002 33.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.149 4.149 11 C -0.141 4.141 12 C -0.170 4.170 13 C 0.302 3.698 14 O -0.409 6.409 15 N -0.282 5.282 16 N -0.272 5.272 17 C 0.298 3.702 18 O -0.407 6.407 19 C -0.132 4.132 20 C -0.080 4.080 21 C -0.092 4.092 22 C -0.171 4.171 23 C 0.080 3.920 24 F -0.119 7.119 25 C -0.171 4.171 26 C -0.091 4.091 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.273 0.727 37 H 0.274 0.726 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.874 -33.443 -0.001 33.796 hybrid contribution 0.653 0.750 -0.003 0.994 sum 5.527 -32.693 -0.003 33.157 Atomic orbital electron populations 1.69963 1.06044 1.26639 1.50797 1.25033 0.94840 0.99219 0.95399 0.86669 0.79575 0.83229 0.78560 1.20289 1.21312 1.20283 1.21246 0.92977 0.91199 1.50629 0.92772 1.19090 0.94038 0.91231 0.97344 1.21660 0.99147 0.93778 1.00284 1.21490 0.96938 0.92461 1.03199 1.21788 1.00235 0.90119 1.04810 1.21547 0.88863 0.84075 0.75265 1.90729 1.13915 1.87012 1.49213 1.45295 1.09068 0.96207 1.77675 1.44930 1.09225 0.97047 1.76003 1.20797 0.88649 0.83841 0.76927 1.90772 1.13507 1.86991 1.49414 1.20554 0.97497 0.88699 1.06463 1.19243 0.98821 0.96392 0.93552 1.20872 0.95577 0.94766 0.97945 1.21118 0.99924 0.98817 0.97249 1.17759 0.91689 0.87788 0.94781 1.91507 1.66594 1.56375 1.97448 1.21118 0.99982 0.98764 0.97250 1.20873 0.95597 0.94729 0.97950 0.92987 0.96566 0.96554 0.93309 0.93303 0.91582 0.91574 0.88415 0.88420 0.72686 0.72644 0.86963 0.86965 0.84948 0.84594 0.84593 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 11 C -0.10 -1.71 4.50 -26.73 -0.12 -1.83 16 12 C -0.13 -1.53 5.70 -27.88 -0.16 -1.69 16 13 C 0.51 6.40 7.95 -10.98 -0.09 6.31 16 14 O -0.53 -8.48 15.82 5.56 0.09 -8.39 16 15 N -0.53 -5.35 6.26 31.22 0.20 -5.15 16 16 N -0.52 -4.48 6.26 31.22 0.20 -4.29 16 17 C 0.51 4.17 7.94 -10.98 -0.09 4.08 16 18 O -0.53 -6.28 15.87 5.56 0.09 -6.19 16 19 C -0.09 -0.40 5.83 -29.03 -0.17 -0.57 16 20 C -0.08 -0.50 4.37 -104.62 -0.46 -0.96 16 21 C -0.07 -0.47 9.70 -39.59 -0.38 -0.85 16 22 C -0.15 -1.07 10.03 -39.51 -0.40 -1.46 16 23 C 0.10 0.80 7.30 -39.42 -0.29 0.51 16 24 F -0.14 -1.26 17.27 2.25 0.04 -1.22 16 25 C -0.15 -1.07 10.03 -39.52 -0.40 -1.46 16 26 C -0.07 -0.47 9.70 -39.59 -0.38 -0.85 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 33 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.43 3.83 8.00 -182.60 -1.46 2.37 16 37 H 0.43 3.16 8.00 -182.60 -1.46 1.70 16 38 H 0.11 0.24 8.08 -51.93 -0.42 -0.18 16 39 H 0.11 0.24 8.08 -51.93 -0.42 -0.18 16 40 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -36.10 378.87 -9.96 -46.06 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -8.37 Total: -2.41 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -3.62 Total: -14.36 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 1.13 Total: -35.88 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.18 Total: -14.58 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.10 -9.96 -46.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805153554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.570 kcal (2) G-P(sol) polarization free energy of solvation -36.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds