Wall clock time and date at job start Tue Mar 31 2020 13:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48503 * 109.47261 * 239.99803 * 3 2 1 5 5 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47297 * 119.99984 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47342 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46978 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46978 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47084 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99985 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99944 * 180.02562 * 13 12 11 16 16 N 1.40091 * 120.00001 * 180.02562 * 15 13 12 17 17 C 1.34777 * 120.00219 * 179.97438 * 16 15 13 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00161 * 179.97438 * 17 16 15 20 20 C 1.50701 * 109.47064 * 180.02562 * 19 17 16 21 21 C 1.38244 * 119.97486 * 269.72932 * 20 19 17 22 22 C 1.38202 * 120.02338 * 179.72838 * 21 20 19 23 23 C 1.38457 * 119.97200 * 0.56577 * 22 21 20 24 24 F 1.35099 * 120.02649 * 179.68648 * 23 22 21 25 25 C 1.38455 * 119.95159 * 359.70550 * 23 22 21 26 26 C 1.38200 * 119.97412 * 0.02562 * 25 23 22 27 27 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46752 * 59.99146 * 9 7 2 29 29 H 1.08998 * 109.46909 * 300.00133 * 9 7 2 30 30 H 1.09002 * 109.46777 * 60.00285 * 10 9 7 31 31 H 1.08992 * 109.46827 * 299.99848 * 10 9 7 32 32 H 1.09002 * 109.47097 * 60.00199 * 11 10 9 33 33 H 1.09001 * 109.47142 * 300.00234 * 11 10 9 34 34 H 1.09002 * 109.47045 * 60.00167 * 12 11 10 35 35 H 1.09001 * 109.47375 * 300.00092 * 12 11 10 36 36 H 0.97000 * 119.99708 * 359.97438 * 15 13 12 37 37 H 0.97005 * 120.00319 * 359.97438 * 16 15 13 38 38 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 39 39 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 40 40 H 1.07996 * 119.98449 * 359.97438 * 21 20 19 41 41 H 1.07995 * 120.01101 * 180.25281 * 22 21 20 42 42 H 1.08001 * 120.01453 * 179.97438 * 25 23 22 43 43 H 1.08008 * 119.98737 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0005 13 6 1.7211 -7.4551 0.0005 14 8 0.5084 -7.4551 0.0005 15 7 2.3951 -8.6223 0.0005 16 7 1.6946 -9.8355 0.0000 17 6 2.3685 -11.0028 -0.0005 18 8 3.5813 -11.0027 -0.0001 19 6 1.6150 -12.3079 -0.0005 20 6 2.5943 -13.4533 -0.0005 21 6 3.0389 -13.9820 -1.1980 22 6 3.9413 -15.0287 -1.1993 23 6 4.3911 -15.5556 -0.0005 24 9 5.2684 -16.5829 -0.0004 25 6 3.9409 -15.0290 1.1983 26 6 3.0427 -13.9786 1.1970 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5570 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8906 31 1 2.8720 -3.6043 -0.8894 32 1 0.8534 -5.0451 -0.8886 33 1 0.8540 -5.0445 0.8914 34 1 3.1019 -6.0922 0.8901 35 1 3.1007 -6.0923 -0.8899 36 1 3.3651 -8.6222 0.0002 37 1 0.7246 -9.8356 0.0000 38 1 0.9880 -12.3655 -0.8903 39 1 0.9887 -12.3658 0.8897 40 1 2.6839 -13.5742 -2.1329 41 1 4.2916 -15.4388 -2.1349 42 1 4.2907 -15.4394 2.1340 43 1 2.6911 -13.5679 2.1320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805153554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:45 Heat of formation + Delta-G solvation = -109.928288 kcal Electronic energy + Delta-G solvation = -24666.093779 eV Core-core repulsion = 20625.064943 eV Total energy + Delta-G solvation = -4041.028836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.91094 -41.54405 -40.53372 -39.48687 -36.79889 -36.27843 -34.62317 -33.88177 -32.57024 -32.08437 -31.08624 -28.33148 -27.21674 -24.36704 -24.03182 -23.11069 -22.39582 -21.76197 -21.17558 -18.95358 -18.71419 -18.53739 -18.36131 -17.50288 -17.03855 -17.02434 -16.59134 -16.54927 -16.47558 -16.24070 -15.45327 -15.44818 -15.05527 -14.83633 -14.51581 -14.49595 -14.34997 -13.84129 -13.61088 -13.30279 -13.14765 -12.98202 -12.79190 -12.71835 -12.37811 -12.37546 -12.14808 -12.11869 -11.92464 -11.45142 -11.34083 -11.32557 -11.19185 -10.90053 -10.52079 -10.04528 -9.57492 -9.44551 -8.16913 -6.28623 0.06796 0.30071 0.87511 1.25543 1.41900 1.45234 1.53087 1.69831 2.43294 2.55961 3.06185 3.15967 3.29871 3.55087 3.67043 3.76059 3.96517 3.98663 4.07887 4.16675 4.22721 4.32641 4.62076 4.62484 4.64031 4.69426 4.85427 4.89588 4.97889 5.02666 5.17269 5.21478 5.25494 5.34897 5.39780 5.49961 5.57099 5.61930 5.71603 5.81602 5.91037 5.93145 6.27868 6.47361 6.85406 6.89883 7.31356 7.40907 8.94821 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.043784 B = 0.001443 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.344761 B =19400.985544 C =19714.192079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.098 4.098 11 C -0.095 4.095 12 C -0.120 4.120 13 C 0.518 3.482 14 O -0.575 6.575 15 N -0.524 5.524 16 N -0.523 5.523 17 C 0.516 3.484 18 O -0.570 6.570 19 C -0.084 4.084 20 C -0.085 4.085 21 C -0.081 4.081 22 C -0.161 4.161 23 C 0.073 3.927 24 F -0.152 7.152 25 C -0.161 4.161 26 C -0.081 4.081 27 H 0.262 0.738 28 H -0.014 1.014 29 H -0.014 1.014 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.438 0.562 37 H 0.438 0.562 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.165 -33.836 -0.003 34.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.019 4.019 10 C -0.135 4.135 11 C -0.133 4.133 12 C -0.161 4.161 13 C 0.307 3.693 14 O -0.453 6.453 15 N -0.273 5.273 16 N -0.272 5.272 17 C 0.304 3.696 18 O -0.447 6.447 19 C -0.125 4.125 20 C -0.086 4.086 21 C -0.099 4.099 22 C -0.180 4.180 23 C 0.054 3.946 24 F -0.131 7.131 25 C -0.180 4.180 26 C -0.099 4.099 27 H 0.071 0.929 28 H 0.005 0.995 29 H 0.005 0.995 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.282 0.718 37 H 0.281 0.719 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.169 0.831 41 H 0.164 0.836 42 H 0.164 0.836 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.058 -33.773 -0.002 34.312 hybrid contribution 0.266 0.793 -0.002 0.837 sum 6.324 -32.980 -0.004 33.581 Atomic orbital electron populations 1.70116 1.07959 1.27738 1.51829 1.26043 0.95755 1.03557 0.94817 0.85479 0.78207 0.77950 0.79260 1.19044 1.21094 1.19032 1.21750 0.93755 0.92362 1.50321 0.91675 1.19057 0.94713 0.93644 0.94480 1.21459 0.97882 0.92771 1.01426 1.21255 0.97373 0.93086 1.01585 1.21647 0.99086 0.87943 1.07396 1.21458 0.88196 0.84820 0.74843 1.90722 1.15557 1.87564 1.51429 1.45099 1.09440 0.96529 1.76228 1.45131 1.09618 0.96456 1.75955 1.21470 0.88310 0.84436 0.75384 1.90765 1.15315 1.87473 1.51164 1.20672 0.97019 0.85451 1.09320 1.19526 0.98924 0.96719 0.93450 1.21175 0.95242 0.94471 0.98976 1.21343 1.00127 0.99122 0.97412 1.18071 0.92453 0.88280 0.95790 1.91469 1.67120 1.56983 1.97546 1.21343 1.00180 0.99070 0.97414 1.21175 0.95267 0.94440 0.98980 0.92900 0.99527 0.99515 0.92040 0.92035 0.93316 0.93304 0.85806 0.85814 0.71832 0.71889 0.84076 0.84083 0.83113 0.83593 0.83593 0.83126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.03 13.29 21.45 0.28 -57.75 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 3 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.54 -31.05 9.11 25.60 0.23 -30.81 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 0.97 4.97 29.85 0.15 1.12 16 10 C -0.10 -3.79 5.15 30.59 0.16 -3.64 16 11 C -0.09 -3.11 4.50 30.59 0.14 -2.98 16 12 C -0.12 -2.58 5.70 29.85 0.17 -2.41 16 13 C 0.52 12.07 7.95 87.66 0.70 12.76 16 14 O -0.58 -17.94 15.82 -3.02 -0.05 -17.98 16 15 N -0.52 -9.43 6.26 -173.53 -1.09 -10.52 16 16 N -0.52 -7.78 6.26 -173.53 -1.09 -8.87 16 17 C 0.52 7.15 7.94 87.66 0.70 7.85 16 18 O -0.57 -12.43 15.87 -3.02 -0.05 -12.48 16 19 C -0.08 -0.48 5.83 29.10 0.17 -0.31 16 20 C -0.09 -0.90 4.37 -19.86 -0.09 -0.99 16 21 C -0.08 -0.90 9.70 22.26 0.22 -0.68 16 22 C -0.16 -2.17 10.03 22.31 0.22 -1.95 16 23 C 0.07 1.18 7.30 22.37 0.16 1.34 16 24 F -0.15 -2.82 17.27 44.97 0.78 -2.04 16 25 C -0.16 -2.17 10.03 22.31 0.22 -1.95 16 26 C -0.08 -0.90 9.70 22.26 0.22 -0.69 16 27 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 28 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 29 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 33 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 34 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.12 2.07 8.14 -2.39 -0.02 2.06 16 36 H 0.44 6.77 8.00 -213.33 -1.71 5.06 16 37 H 0.44 5.48 8.00 -213.32 -1.71 3.78 16 38 H 0.14 0.04 8.08 -2.39 -0.02 0.02 16 39 H 0.14 0.04 8.08 -2.39 -0.02 0.02 16 40 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 41 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 42 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -80.48 378.87 2.27 -78.21 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -2.37 Total: 8.23 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: 3.83 Total: -23.12 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -1.89 Total: -77.13 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.10 Total: -30.46 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -80.48 2.27 -78.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805153554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.721 kcal (2) G-P(sol) polarization free energy of solvation -80.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds