Wall clock time and date at job start Tue Mar 31 2020 13:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48503 * 109.47514 * 149.99758 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00251 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99795 * 180.02562 * 13 12 11 16 16 N 1.40103 * 119.99524 * 180.02562 * 15 13 12 17 17 C 1.34780 * 119.99524 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.50703 * 109.47064 * 179.97438 * 19 17 16 21 21 C 1.38215 * 120.01293 * 100.00060 * 20 19 17 22 22 C 1.38223 * 120.02750 * 179.97438 * 21 20 19 23 23 C 1.38273 * 120.04965 * 0.02562 * 22 21 20 24 24 C 1.38178 * 120.02564 * 0.02562 * 23 22 21 25 25 C 1.38445 * 120.01246 * 279.72227 * 20 19 17 26 26 F 1.35105 * 120.02239 * 0.02562 * 25 20 19 27 27 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 30 30 H 1.09001 * 109.46832 * 59.99807 * 10 9 7 31 31 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 32 32 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 33 33 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 34 34 H 1.09001 * 109.47289 * 60.00300 * 12 11 10 35 35 H 1.09002 * 109.47153 * 300.00216 * 12 11 10 36 36 H 0.96995 * 120.00011 * 359.97438 * 15 13 12 37 37 H 0.96995 * 120.00466 * 359.97438 * 16 15 13 38 38 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 39 39 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 40 40 H 1.07996 * 119.98644 * 359.97438 * 21 20 19 41 41 H 1.07996 * 119.97518 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.98896 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.01215 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1500 0.0005 13 6 1.7207 -7.4551 0.0005 14 8 0.5079 -7.4551 0.0015 15 7 2.3946 -8.6224 0.0005 16 7 1.6940 -9.8356 0.0000 17 6 2.3679 -11.0029 0.0005 18 8 3.5807 -11.0029 0.0010 19 6 1.6143 -12.3079 0.0005 20 6 2.5936 -13.4534 0.0005 21 6 2.8849 -14.1140 1.1792 22 6 3.7826 -15.1650 1.1794 23 6 4.3907 -15.5565 0.0009 24 6 4.1019 -14.8969 -1.1785 25 6 3.1975 -13.8482 -1.1811 26 9 2.9096 -13.2065 -2.3346 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8717 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 0.8532 -5.0451 -0.8886 33 1 0.8537 -5.0445 0.8914 34 1 3.1016 -6.0923 0.8901 35 1 3.1003 -6.0924 -0.8899 36 1 3.3646 -8.6224 0.0002 37 1 0.7241 -9.8356 0.0000 38 1 0.9874 -12.3655 0.8903 39 1 0.9880 -12.3659 -0.8897 40 1 2.4109 -13.8088 2.1003 41 1 4.0099 -15.6802 2.1009 42 1 5.0923 -16.3775 0.0023 43 1 4.5773 -15.2026 -2.0988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805180804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:49 Heat of formation + Delta-G solvation = -85.107347 kcal Electronic energy + Delta-G solvation = -25070.785510 eV Core-core repulsion = 21030.832991 eV Total energy + Delta-G solvation = -4039.952519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.27203 -40.71574 -39.68758 -38.84749 -35.68413 -34.88297 -33.63059 -32.72581 -31.68080 -30.97756 -29.61864 -27.94285 -25.60082 -23.29949 -22.97084 -22.35283 -21.55625 -20.44317 -20.00866 -18.18181 -18.01647 -17.73355 -16.98810 -16.31403 -16.24381 -16.11502 -16.03404 -15.75308 -15.33779 -14.76341 -14.56188 -14.41141 -14.12585 -13.99974 -13.74367 -13.64756 -12.86327 -12.68834 -12.65346 -12.37428 -12.05652 -11.75790 -11.65754 -11.53057 -11.46356 -11.00024 -10.62326 -10.58304 -10.52752 -10.44637 -10.12777 -9.63383 -9.45730 -9.26302 -9.10196 -9.00347 -8.60708 -8.30921 -5.95803 -3.98296 0.63016 0.75411 1.62361 2.01954 2.56891 3.09928 3.34147 3.40253 3.43447 3.78691 3.82576 3.93453 4.21005 4.35957 4.46263 4.49081 4.63345 4.78708 4.82785 4.86706 4.96706 5.21357 5.27162 5.36105 5.39755 5.56456 5.66478 5.74493 5.80793 5.92150 6.08213 6.22319 6.38644 6.39226 6.46355 6.51792 6.79598 6.97574 7.17651 7.26779 7.61474 7.73208 7.88440 8.05216 8.15250 8.47075 9.09328 9.65488 11.15470 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.040170 B = 0.001557 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.877463 B =17984.222810 C =18075.996560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.103 4.103 12 C -0.128 4.128 13 C 0.515 3.485 14 O -0.535 6.535 15 N -0.532 5.532 16 N -0.523 5.523 17 C 0.515 3.485 18 O -0.532 6.532 19 C -0.092 4.092 20 C -0.104 4.104 21 C -0.078 4.078 22 C -0.131 4.131 23 C -0.089 4.089 24 C -0.154 4.154 25 C 0.118 3.882 26 F -0.136 7.136 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.431 0.569 37 H 0.432 0.568 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.307 -35.328 1.226 35.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.149 4.149 11 C -0.141 4.141 12 C -0.169 4.169 13 C 0.302 3.698 14 O -0.409 6.409 15 N -0.282 5.282 16 N -0.271 5.271 17 C 0.300 3.700 18 O -0.407 6.407 19 C -0.133 4.133 20 C -0.105 4.105 21 C -0.096 4.096 22 C -0.149 4.149 23 C -0.107 4.107 24 C -0.173 4.173 25 C 0.098 3.902 26 F -0.115 7.115 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.273 0.727 37 H 0.274 0.726 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.127 -35.164 1.182 35.713 hybrid contribution 0.410 1.054 -0.260 1.160 sum 6.537 -34.110 0.922 34.743 Atomic orbital electron populations 1.69972 1.06048 1.26513 1.50902 1.25037 0.94841 0.99234 0.95426 0.86607 0.79826 0.83570 0.78053 1.20711 1.21259 1.19922 1.21285 0.93016 0.91187 1.50468 0.92715 1.19099 0.94051 0.91247 0.97354 1.21659 0.99140 0.93775 1.00283 1.21488 0.96941 0.92453 1.03203 1.21786 1.00231 0.90107 1.04808 1.21547 0.88869 0.84059 0.75282 1.90728 1.13908 1.87012 1.49232 1.45287 1.09058 0.96170 1.77642 1.44879 1.09189 0.97017 1.76014 1.20698 0.88612 0.83829 0.76830 1.90759 1.13478 1.86988 1.49483 1.20476 0.97528 0.88675 1.06621 1.19238 1.00312 0.98042 0.92941 1.20935 0.97112 0.94944 0.96637 1.21191 0.97393 0.97690 0.98590 1.21054 0.98760 0.99113 0.91751 1.21150 0.99201 0.96687 1.00273 1.17521 0.97688 0.93441 0.81507 1.91510 1.92090 1.80600 1.47253 0.93049 0.96559 0.96539 0.93311 0.93305 0.91580 0.91573 0.88415 0.88418 0.72698 0.72633 0.86628 0.86941 0.84913 0.85138 0.84950 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.23 5.15 -26.74 -0.14 -2.36 16 11 C -0.10 -1.75 4.50 -26.74 -0.12 -1.87 16 12 C -0.13 -1.59 5.70 -27.88 -0.16 -1.75 16 13 C 0.51 6.77 7.95 -10.98 -0.09 6.68 16 14 O -0.53 -8.85 15.82 5.56 0.09 -8.76 16 15 N -0.53 -5.84 6.26 31.22 0.20 -5.64 16 16 N -0.52 -5.13 6.26 31.22 0.20 -4.94 16 17 C 0.51 5.01 7.93 -10.98 -0.09 4.93 16 18 O -0.53 -7.02 15.80 5.56 0.09 -6.93 16 19 C -0.09 -0.58 5.56 -29.03 -0.16 -0.74 16 20 C -0.10 -0.81 4.42 -104.55 -0.46 -1.27 16 21 C -0.08 -0.49 9.67 -39.60 -0.38 -0.87 16 22 C -0.13 -0.72 10.04 -39.57 -0.40 -1.12 16 23 C -0.09 -0.50 10.04 -39.59 -0.40 -0.90 16 24 C -0.15 -1.12 10.03 -39.51 -0.40 -1.52 16 25 C 0.12 1.06 7.14 -39.42 -0.28 0.78 16 26 F -0.14 -1.42 16.66 2.25 0.04 -1.38 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 33 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.43 4.22 8.00 -182.60 -1.46 2.76 16 37 H 0.43 3.68 8.00 -182.60 -1.46 2.22 16 38 H 0.12 0.38 8.01 -51.93 -0.42 -0.04 16 39 H 0.11 0.56 7.94 -51.93 -0.41 0.15 16 40 H 0.13 0.54 8.04 -52.49 -0.42 0.12 16 41 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 42 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 43 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -36.61 377.88 -9.97 -46.58 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.36 Total: -1.45 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -3.62 Total: -13.38 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 1.13 Total: -37.21 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.18 Total: -15.69 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.61 -9.97 -46.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805180804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.531 kcal (2) G-P(sol) polarization free energy of solvation -36.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds