Wall clock time and date at job start Tue Mar 31 2020 13:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48503 * 109.47514 * 149.99758 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00251 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99795 * 180.02562 * 13 12 11 16 16 N 1.40103 * 119.99524 * 180.02562 * 15 13 12 17 17 C 1.34780 * 119.99524 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.50703 * 109.47064 * 179.97438 * 19 17 16 21 21 C 1.38215 * 120.01293 * 100.00060 * 20 19 17 22 22 C 1.38223 * 120.02750 * 179.97438 * 21 20 19 23 23 C 1.38273 * 120.04965 * 0.02562 * 22 21 20 24 24 C 1.38178 * 120.02564 * 0.02562 * 23 22 21 25 25 C 1.38445 * 120.01246 * 279.72227 * 20 19 17 26 26 F 1.35105 * 120.02239 * 0.02562 * 25 20 19 27 27 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 30 30 H 1.09001 * 109.46832 * 59.99807 * 10 9 7 31 31 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 32 32 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 33 33 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 34 34 H 1.09001 * 109.47289 * 60.00300 * 12 11 10 35 35 H 1.09002 * 109.47153 * 300.00216 * 12 11 10 36 36 H 0.96995 * 120.00011 * 359.97438 * 15 13 12 37 37 H 0.96995 * 120.00466 * 359.97438 * 16 15 13 38 38 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 39 39 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 40 40 H 1.07996 * 119.98644 * 359.97438 * 21 20 19 41 41 H 1.07996 * 119.97518 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.98896 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.01215 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1500 0.0005 13 6 1.7207 -7.4551 0.0005 14 8 0.5079 -7.4551 0.0015 15 7 2.3946 -8.6224 0.0005 16 7 1.6940 -9.8356 0.0000 17 6 2.3679 -11.0029 0.0005 18 8 3.5807 -11.0029 0.0010 19 6 1.6143 -12.3079 0.0005 20 6 2.5936 -13.4534 0.0005 21 6 2.8849 -14.1140 1.1792 22 6 3.7826 -15.1650 1.1794 23 6 4.3907 -15.5565 0.0009 24 6 4.1019 -14.8969 -1.1785 25 6 3.1975 -13.8482 -1.1811 26 9 2.9096 -13.2065 -2.3346 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8717 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 0.8532 -5.0451 -0.8886 33 1 0.8537 -5.0445 0.8914 34 1 3.1016 -6.0923 0.8901 35 1 3.1003 -6.0924 -0.8899 36 1 3.3646 -8.6224 0.0002 37 1 0.7241 -9.8356 0.0000 38 1 0.9874 -12.3655 0.8903 39 1 0.9880 -12.3659 -0.8897 40 1 2.4109 -13.8088 2.1003 41 1 4.0099 -15.6802 2.1009 42 1 5.0923 -16.3775 0.0023 43 1 4.5773 -15.2026 -2.0988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805180804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:48 Heat of formation + Delta-G solvation = -108.989820 kcal Electronic energy + Delta-G solvation = -25071.821132 eV Core-core repulsion = 21030.832991 eV Total energy + Delta-G solvation = -4040.988141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.93462 -41.57059 -40.48783 -39.52882 -36.83755 -36.32976 -34.64113 -34.18937 -32.72222 -31.46597 -31.13314 -28.63804 -27.28676 -24.41817 -23.75204 -23.22081 -22.45845 -21.79063 -21.23045 -19.03254 -18.76656 -18.46128 -18.36239 -17.55640 -17.16570 -17.06737 -16.70100 -16.52515 -16.45542 -16.26072 -15.50088 -15.46230 -15.11896 -14.97795 -14.53688 -14.26705 -14.19619 -13.87782 -13.61685 -13.31749 -13.30303 -13.17009 -12.83552 -12.51578 -12.40707 -12.34917 -12.16445 -12.14094 -11.98256 -11.51771 -11.36687 -11.35741 -11.20970 -10.93514 -10.53632 -9.92756 -9.61772 -9.50962 -8.17871 -6.29568 0.12284 0.27202 0.82625 1.18629 1.41200 1.42993 1.54058 1.63308 2.42526 2.60468 2.99198 3.15079 3.31880 3.41706 3.58828 3.77328 3.91349 4.03832 4.07208 4.14616 4.27199 4.40063 4.48347 4.53867 4.61804 4.67591 4.83019 4.88095 4.94444 5.10590 5.19685 5.21138 5.33499 5.37258 5.37857 5.48377 5.52257 5.59259 5.65181 5.80324 5.89967 5.96642 6.26883 6.40652 6.78194 6.89030 7.24653 7.39974 8.94144 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.040170 B = 0.001557 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.877463 B =17984.222810 C =18075.996560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.097 4.097 11 C -0.095 4.095 12 C -0.119 4.119 13 C 0.518 3.482 14 O -0.575 6.575 15 N -0.524 5.524 16 N -0.522 5.522 17 C 0.516 3.484 18 O -0.568 6.568 19 C -0.088 4.088 20 C -0.118 4.118 21 C -0.085 4.085 22 C -0.131 4.131 23 C -0.091 4.091 24 C -0.168 4.168 25 C 0.083 3.917 26 F -0.153 7.153 27 H 0.262 0.738 28 H -0.014 1.014 29 H -0.013 1.013 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.438 0.562 37 H 0.438 0.562 38 H 0.150 0.850 39 H 0.124 0.876 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.198 -36.471 2.201 37.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.019 4.019 10 C -0.135 4.135 11 C -0.133 4.133 12 C -0.160 4.160 13 C 0.307 3.693 14 O -0.452 6.452 15 N -0.272 5.272 16 N -0.271 5.271 17 C 0.304 3.696 18 O -0.445 6.445 19 C -0.128 4.128 20 C -0.120 4.120 21 C -0.103 4.103 22 C -0.149 4.149 23 C -0.109 4.109 24 C -0.187 4.187 25 C 0.064 3.936 26 F -0.132 7.132 27 H 0.071 0.929 28 H 0.004 0.996 29 H 0.005 0.995 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.282 0.718 37 H 0.281 0.719 38 H 0.168 0.832 39 H 0.142 0.858 40 H 0.173 0.827 41 H 0.175 0.825 42 H 0.176 0.824 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.044 -36.338 2.155 37.280 hybrid contribution -0.180 1.315 -0.542 1.434 sum 7.864 -35.022 1.613 35.930 Atomic orbital electron populations 1.70124 1.07979 1.27685 1.51882 1.26057 0.95771 1.03610 0.94823 0.85408 0.78684 0.78236 0.78462 1.19814 1.20939 1.18431 1.21775 0.93763 0.92331 1.50225 0.91652 1.19064 0.94718 0.93666 0.94490 1.21456 0.97883 0.92702 1.01460 1.21257 0.97362 0.93085 1.01597 1.21654 0.99100 0.87773 1.07459 1.21524 0.88237 0.84777 0.74783 1.90720 1.15559 1.87549 1.51401 1.45120 1.09433 0.96383 1.76306 1.45067 1.09569 0.96540 1.75888 1.21346 0.88337 0.84467 0.75429 1.90739 1.15165 1.87468 1.51156 1.20595 0.97306 0.86108 1.08834 1.19476 1.00759 0.98658 0.93063 1.21302 0.97189 0.94907 0.96899 1.21602 0.96476 0.97256 0.99548 1.21417 0.98847 0.99375 0.91221 1.21405 0.99132 0.96646 1.01471 1.17946 0.99376 0.94689 0.81602 1.91455 1.92426 1.81117 1.48225 0.92892 0.99568 0.99460 0.91956 0.92051 0.93388 0.93222 0.85628 0.85842 0.71837 0.71913 0.83201 0.85791 0.82688 0.82513 0.82432 0.83946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.52 13.29 21.45 0.28 -58.23 16 2 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.54 -31.31 9.11 25.60 0.23 -31.07 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.02 0.96 4.97 29.85 0.15 1.11 16 10 C -0.10 -3.86 5.15 30.59 0.16 -3.70 16 11 C -0.09 -3.22 4.50 30.59 0.14 -3.08 16 12 C -0.12 -2.73 5.70 29.85 0.17 -2.56 16 13 C 0.52 13.08 7.95 87.66 0.70 13.78 16 14 O -0.57 -19.02 15.82 -3.03 -0.05 -19.07 16 15 N -0.52 -10.80 6.26 -173.53 -1.09 -11.89 16 16 N -0.52 -9.68 6.26 -173.53 -1.09 -10.77 16 17 C 0.52 9.53 7.93 87.66 0.70 10.23 16 18 O -0.57 -14.63 15.80 -3.03 -0.05 -14.68 16 19 C -0.09 -0.98 5.56 29.10 0.16 -0.82 16 20 C -0.12 -1.72 4.42 -19.82 -0.09 -1.80 16 21 C -0.09 -0.89 9.67 22.26 0.22 -0.67 16 22 C -0.13 -1.13 10.04 22.27 0.22 -0.91 16 23 C -0.09 -0.88 10.04 22.26 0.22 -0.65 16 24 C -0.17 -2.37 10.03 22.31 0.22 -2.15 16 25 C 0.08 1.50 7.14 22.38 0.16 1.66 16 26 F -0.15 -3.33 16.66 44.97 0.75 -2.58 16 27 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 28 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 29 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 30 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 33 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 34 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.44 7.86 8.00 -213.32 -1.71 6.15 16 37 H 0.44 7.05 8.00 -213.32 -1.71 5.35 16 38 H 0.15 0.58 8.01 -2.39 -0.02 0.56 16 39 H 0.12 1.10 7.94 -2.39 -0.02 1.08 16 40 H 0.16 0.81 8.04 -2.91 -0.02 0.79 16 41 H 0.16 0.47 8.06 -2.91 -0.02 0.44 16 42 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 43 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -81.89 377.88 2.24 -79.65 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -2.37 Total: 11.32 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 3.82 Total: -20.50 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -1.89 Total: -80.89 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.10 Total: -33.75 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.75 Total: -2.58 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -81.89 2.24 -79.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805180804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.336 kcal (2) G-P(sol) polarization free energy of solvation -81.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds