Wall clock time and date at job start Tue Mar 31 2020 13:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99952 * 2 1 4 4 H 1.48494 * 109.47169 * 270.00335 * 3 2 1 5 5 H 1.48493 * 109.47033 * 30.00970 * 3 2 1 6 6 H 1.48506 * 109.46906 * 150.00555 * 3 2 1 7 7 C 1.37882 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99323 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00137 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46733 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46851 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47228 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47311 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99629 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99971 * 180.02562 * 13 12 11 16 16 C 1.46502 * 120.00110 * 180.02562 * 15 13 12 17 17 C 1.50693 * 109.47156 * 179.97438 * 16 15 13 18 18 N 1.28675 * 124.92996 * 90.00127 * 17 16 15 19 19 C 1.32521 * 117.87673 * 179.97438 * 18 17 16 20 20 C 1.34609 * 113.16070 * 0.02562 * 19 18 17 21 21 S 1.70917 * 124.92929 * 269.99437 * 17 16 15 22 22 C 1.51002 * 125.22764 * 179.97438 * 20 19 18 23 23 C 1.53279 * 108.58010 * 343.93286 * 22 20 19 24 24 C 1.53145 * 108.99147 * 49.27844 * 23 22 20 25 25 C 1.52136 * 124.20151 * 180.02562 * 19 18 17 26 26 H 0.97001 * 120.00314 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47104 * 59.99990 * 9 7 2 28 28 H 1.08989 * 109.47052 * 299.99818 * 9 7 2 29 29 H 1.09005 * 109.47321 * 60.00497 * 10 9 7 30 30 H 1.09002 * 109.47606 * 300.00192 * 10 9 7 31 31 H 1.08997 * 109.47099 * 60.00338 * 11 10 9 32 32 H 1.08995 * 109.47502 * 299.99868 * 11 10 9 33 33 H 1.08997 * 109.46982 * 60.00049 * 12 11 10 34 34 H 1.09004 * 109.46744 * 299.99980 * 12 11 10 35 35 H 0.96995 * 120.00024 * 359.97438 * 15 13 12 36 36 H 1.08997 * 109.47226 * 59.99538 * 16 15 13 37 37 H 1.09002 * 109.46769 * 299.99762 * 16 15 13 38 38 H 1.08998 * 109.61958 * 103.66826 * 22 20 19 39 39 H 1.09004 * 109.61689 * 224.20694 * 22 20 19 40 40 H 1.09003 * 109.54876 * 169.13341 * 23 22 20 41 41 H 1.09000 * 109.54923 * 289.32496 * 23 22 20 42 42 H 1.09001 * 109.47443 * 49.60638 * 24 23 22 43 43 H 1.09000 * 109.47204 * 169.62138 * 24 23 22 44 44 H 1.09004 * 109.58967 * 42.70040 * 25 19 18 45 45 H 1.08997 * 109.71810 * 282.32301 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0009 12 6 6.0615 -4.0790 -0.0015 13 6 7.5685 -4.0791 -0.0008 14 8 8.1749 -3.0287 -0.0004 15 7 8.2424 -5.2462 -0.0016 16 6 9.7074 -5.2463 -0.0004 17 6 10.2096 -6.6670 -0.0010 18 7 10.4561 -7.3609 -1.0562 19 6 10.8948 -8.6008 -0.8941 20 6 11.0181 -8.9539 0.3990 21 16 10.5348 -7.5907 1.3999 22 6 11.4932 -10.2994 0.8930 23 6 11.4214 -11.2988 -0.2670 24 6 12.0973 -10.6847 -1.4964 25 6 11.2308 -9.5455 -2.0382 26 1 -0.4851 0.8400 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8744 -0.6801 -0.8911 29 1 3.6578 -3.1506 -0.8908 30 1 3.6585 -3.1502 0.8892 31 1 5.9147 -2.1227 0.8890 32 1 5.9149 -2.1228 -0.8909 33 1 5.6982 -4.5925 -0.8916 34 1 5.6981 -4.5932 0.8884 35 1 7.7574 -6.0862 -0.0023 36 1 10.0700 -4.7334 0.8905 37 1 10.0714 -4.7314 -0.8895 38 1 12.5222 -10.2183 1.2431 39 1 10.8524 -10.6374 1.7075 40 1 11.9363 -12.2183 0.0114 41 1 10.3784 -11.5193 -0.4943 42 1 13.0763 -10.2956 -1.2164 43 1 12.2159 -11.4483 -2.2651 44 1 11.7792 -9.0048 -2.8096 45 1 10.3123 -9.9531 -2.4604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806750977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:20 Heat of formation + Delta-G solvation = -32.711341 kcal Electronic energy + Delta-G solvation = -23153.315509 eV Core-core repulsion = 19681.848227 eV Total energy + Delta-G solvation = -3471.467282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.71298 -39.71491 -37.15970 -35.23688 -34.74143 -32.57920 -31.46019 -30.94706 -29.92185 -27.76889 -25.69424 -24.43173 -23.41873 -22.09981 -21.51883 -20.34639 -20.00306 -18.97997 -18.55491 -17.00401 -16.61345 -16.31663 -15.94600 -15.68113 -15.27971 -14.72991 -14.48762 -14.40557 -14.32327 -14.12582 -13.73150 -13.61628 -13.15370 -12.90948 -12.62848 -12.47494 -12.37235 -12.23801 -12.05407 -11.73220 -11.47855 -11.41291 -11.09348 -11.03089 -10.71976 -10.51917 -10.08958 -10.00152 -9.81597 -9.67196 -9.62593 -9.44724 -9.33381 -9.10511 -9.03187 -8.47459 -5.98653 -3.96023 0.15293 0.83428 1.27449 2.20247 2.62735 3.09766 3.37123 3.43973 3.46512 3.50139 4.13092 4.20251 4.27069 4.39806 4.51968 4.55397 4.74613 4.86985 4.90693 4.97258 5.05427 5.19059 5.22933 5.26512 5.31113 5.33132 5.36586 5.39505 5.42676 5.57753 5.69937 5.78455 5.79202 6.05141 6.09121 6.17348 6.43498 6.70604 6.84410 7.01412 7.25626 7.31716 7.40652 7.53390 7.86838 8.13494 8.60357 9.06418 9.64780 11.14827 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032652 B = 0.001716 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.312882 B =16313.931205 C =16509.606415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.103 4.103 11 C -0.106 4.106 12 C -0.137 4.137 13 C 0.517 3.483 14 O -0.534 6.534 15 N -0.733 5.733 16 C 0.200 3.800 17 C 0.027 3.973 18 N -0.453 5.453 19 C 0.064 3.936 20 C -0.221 4.221 21 S 0.140 5.860 22 C -0.043 4.043 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.040 4.040 26 H 0.262 0.738 27 H 0.016 0.984 28 H 0.011 0.989 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.402 0.598 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.471 -26.504 1.154 38.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.141 4.141 11 C -0.144 4.144 12 C -0.177 4.177 13 C 0.304 3.696 14 O -0.409 6.409 15 N -0.388 5.388 16 C 0.073 3.927 17 C -0.252 4.252 18 N -0.168 5.168 19 C -0.068 4.068 20 C -0.342 4.342 21 S 0.397 5.603 22 C -0.082 4.082 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.080 4.080 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.236 0.764 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 28.594 -25.088 1.753 38.080 hybrid contribution 0.305 0.000 -0.698 0.762 sum 28.899 -25.088 1.055 38.284 Atomic orbital electron populations 1.69918 1.06307 1.26806 1.51508 1.25042 0.94731 0.99219 0.94620 0.86772 0.80436 0.83550 0.78538 1.20325 1.21467 1.18892 1.21191 0.89692 0.94381 1.50485 0.91112 1.19576 0.96889 0.92507 0.96333 1.21481 0.91683 0.99930 1.00959 1.21492 0.97223 0.92740 1.02970 1.21781 0.89706 1.01876 1.04370 1.21116 0.90954 0.82731 0.74770 1.90716 1.70541 1.31152 1.48497 1.46079 1.05620 1.09595 1.77526 1.19669 0.81343 0.87158 1.04497 1.26660 1.05836 1.01485 0.91214 1.65834 1.13023 1.05876 1.32023 1.20925 1.01225 0.90802 0.93853 1.26179 1.10440 1.01525 0.96051 1.84034 1.59820 1.04724 1.11726 1.20218 1.01401 0.88163 0.98454 1.21625 1.01854 0.97672 0.94428 1.21591 0.98991 0.97393 0.97855 1.20381 1.00644 0.93298 0.93654 0.92835 0.96604 0.97032 0.92842 0.92824 0.91724 0.91730 0.88828 0.88856 0.76366 0.89259 0.88485 0.89885 0.90078 0.90631 0.91173 0.91393 0.90556 0.89739 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.55 13.96 55.43 0.77 -27.77 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 11 C -0.11 -1.79 4.50 -26.73 -0.12 -1.91 16 12 C -0.14 -1.74 5.70 -27.88 -0.16 -1.90 16 13 C 0.52 6.89 7.83 -10.99 -0.09 6.80 16 14 O -0.53 -9.22 15.98 5.55 0.09 -9.13 16 15 N -0.73 -7.48 5.55 -61.48 -0.34 -7.82 16 16 C 0.20 1.98 6.25 -5.20 -0.03 1.94 16 17 C 0.03 0.25 6.75 -13.60 -0.09 0.16 16 18 N -0.45 -4.75 10.51 -7.32 -0.08 -4.83 16 19 C 0.06 0.55 6.78 -82.87 -0.56 -0.01 16 20 C -0.22 -1.63 6.39 -35.44 -0.23 -1.85 16 21 S 0.14 1.05 23.17 -107.50 -2.49 -1.44 16 22 C -0.04 -0.20 6.28 -27.59 -0.17 -0.37 16 23 C -0.12 -0.43 5.95 -26.51 -0.16 -0.59 16 24 C -0.12 -0.49 5.87 -26.63 -0.16 -0.64 16 25 C -0.04 -0.25 6.29 -27.15 -0.17 -0.42 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 28 H 0.01 0.28 7.57 -51.94 -0.39 -0.11 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 32 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.40 3.30 8.46 -40.82 -0.35 2.95 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.07 0.28 8.11 -51.93 -0.42 -0.14 16 42 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 43 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -35.04 379.95 -11.06 -46.10 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -7.45 Total: -3.48 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.62 Total: -15.20 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.36 Total: -40.43 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.49 Total: -1.44 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.04 -11.06 -46.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806750977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.391 kcal (2) G-P(sol) polarization free energy of solvation -35.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds