Wall clock time and date at job start Tue Mar 31 2020 13:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99952 * 2 1 4 4 H 1.48494 * 109.47169 * 270.00335 * 3 2 1 5 5 H 1.48493 * 109.47033 * 30.00970 * 3 2 1 6 6 H 1.48506 * 109.46906 * 150.00555 * 3 2 1 7 7 C 1.37882 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99323 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00137 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46733 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46851 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47228 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47311 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99629 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99971 * 180.02562 * 13 12 11 16 16 C 1.46502 * 120.00110 * 180.02562 * 15 13 12 17 17 C 1.50693 * 109.47156 * 179.97438 * 16 15 13 18 18 N 1.28675 * 124.92996 * 90.00127 * 17 16 15 19 19 C 1.32521 * 117.87673 * 179.97438 * 18 17 16 20 20 C 1.34609 * 113.16070 * 0.02562 * 19 18 17 21 21 S 1.70917 * 124.92929 * 269.99437 * 17 16 15 22 22 C 1.51002 * 125.22764 * 179.97438 * 20 19 18 23 23 C 1.53279 * 108.58010 * 343.93286 * 22 20 19 24 24 C 1.53145 * 108.99147 * 49.27844 * 23 22 20 25 25 C 1.52136 * 124.20151 * 180.02562 * 19 18 17 26 26 H 0.97001 * 120.00314 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47104 * 59.99990 * 9 7 2 28 28 H 1.08989 * 109.47052 * 299.99818 * 9 7 2 29 29 H 1.09005 * 109.47321 * 60.00497 * 10 9 7 30 30 H 1.09002 * 109.47606 * 300.00192 * 10 9 7 31 31 H 1.08997 * 109.47099 * 60.00338 * 11 10 9 32 32 H 1.08995 * 109.47502 * 299.99868 * 11 10 9 33 33 H 1.08997 * 109.46982 * 60.00049 * 12 11 10 34 34 H 1.09004 * 109.46744 * 299.99980 * 12 11 10 35 35 H 0.96995 * 120.00024 * 359.97438 * 15 13 12 36 36 H 1.08997 * 109.47226 * 59.99538 * 16 15 13 37 37 H 1.09002 * 109.46769 * 299.99762 * 16 15 13 38 38 H 1.08998 * 109.61958 * 103.66826 * 22 20 19 39 39 H 1.09004 * 109.61689 * 224.20694 * 22 20 19 40 40 H 1.09003 * 109.54876 * 169.13341 * 23 22 20 41 41 H 1.09000 * 109.54923 * 289.32496 * 23 22 20 42 42 H 1.09001 * 109.47443 * 49.60638 * 24 23 22 43 43 H 1.09000 * 109.47204 * 169.62138 * 24 23 22 44 44 H 1.09004 * 109.58967 * 42.70040 * 25 19 18 45 45 H 1.08997 * 109.71810 * 282.32301 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0009 12 6 6.0615 -4.0790 -0.0015 13 6 7.5685 -4.0791 -0.0008 14 8 8.1749 -3.0287 -0.0004 15 7 8.2424 -5.2462 -0.0016 16 6 9.7074 -5.2463 -0.0004 17 6 10.2096 -6.6670 -0.0010 18 7 10.4561 -7.3609 -1.0562 19 6 10.8948 -8.6008 -0.8941 20 6 11.0181 -8.9539 0.3990 21 16 10.5348 -7.5907 1.3999 22 6 11.4932 -10.2994 0.8930 23 6 11.4214 -11.2988 -0.2670 24 6 12.0973 -10.6847 -1.4964 25 6 11.2308 -9.5455 -2.0382 26 1 -0.4851 0.8400 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8744 -0.6801 -0.8911 29 1 3.6578 -3.1506 -0.8908 30 1 3.6585 -3.1502 0.8892 31 1 5.9147 -2.1227 0.8890 32 1 5.9149 -2.1228 -0.8909 33 1 5.6982 -4.5925 -0.8916 34 1 5.6981 -4.5932 0.8884 35 1 7.7574 -6.0862 -0.0023 36 1 10.0700 -4.7334 0.8905 37 1 10.0714 -4.7314 -0.8895 38 1 12.5222 -10.2183 1.2431 39 1 10.8524 -10.6374 1.7075 40 1 11.9363 -12.2183 0.0114 41 1 10.3784 -11.5193 -0.4943 42 1 13.0763 -10.2956 -1.2164 43 1 12.2159 -11.4483 -2.2651 44 1 11.7792 -9.0048 -2.8096 45 1 10.3123 -9.9531 -2.4604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806750977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:20 Heat of formation + Delta-G solvation = -55.071626 kcal Electronic energy + Delta-G solvation = -23154.285124 eV Core-core repulsion = 19681.848227 eV Total energy + Delta-G solvation = -3472.436897 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34572 -40.72176 -37.68776 -36.71355 -35.77003 -34.60223 -32.20023 -31.86391 -31.05471 -28.68840 -27.19617 -24.98122 -24.14023 -23.48502 -22.08126 -21.76737 -21.35682 -19.53043 -19.15523 -18.85047 -17.94672 -17.23973 -16.98599 -16.33817 -16.26232 -15.80448 -15.77690 -15.19944 -15.15011 -14.79966 -14.75649 -14.53741 -14.37531 -14.02458 -13.72560 -13.58071 -13.52617 -13.37391 -12.93313 -12.84296 -12.81895 -12.33258 -12.07176 -11.80531 -11.75034 -11.74154 -11.52564 -11.42945 -11.34059 -11.26135 -10.96264 -10.75621 -10.66128 -10.30101 -10.21855 -9.64788 -8.29291 -6.32349 -0.47120 0.23908 0.66371 1.35332 1.36603 1.49591 1.53751 1.59189 2.23887 2.36357 2.82674 3.06146 3.61966 3.74101 3.81504 3.94401 3.99410 4.03275 4.12351 4.16936 4.22124 4.44295 4.51859 4.55107 4.60759 4.65152 4.65428 4.77566 4.81971 4.86762 4.95957 5.02331 5.13372 5.15559 5.17525 5.18837 5.21079 5.31503 5.33851 5.41069 5.61388 5.66707 5.69282 6.29952 6.39839 6.66982 6.75641 7.15191 7.32465 8.87260 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032652 B = 0.001716 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.312882 B =16313.931205 C =16509.606415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.251 1.251 7 C -0.531 4.531 8 H 0.037 0.963 9 C -0.017 4.017 10 C -0.095 4.095 11 C -0.098 4.098 12 C -0.130 4.130 13 C 0.519 3.481 14 O -0.579 6.579 15 N -0.717 5.717 16 C 0.203 3.797 17 C 0.008 3.992 18 N -0.479 5.479 19 C 0.040 3.960 20 C -0.215 4.215 21 S 0.168 5.832 22 C -0.046 4.046 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.041 4.041 26 H 0.266 0.734 27 H 0.015 0.985 28 H 0.013 0.987 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.414 0.586 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.420 -28.103 1.767 41.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.175 1.175 7 C -0.569 4.569 8 H 0.055 0.945 9 C -0.055 4.055 10 C -0.132 4.132 11 C -0.136 4.136 12 C -0.170 4.170 13 C 0.308 3.692 14 O -0.458 6.458 15 N -0.371 5.371 16 C 0.076 3.924 17 C -0.270 4.270 18 N -0.195 5.195 19 C -0.092 4.092 20 C -0.337 4.337 21 S 0.425 5.575 22 C -0.085 4.085 23 C -0.153 4.153 24 C -0.154 4.154 25 C -0.081 4.081 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.250 0.750 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 30.550 -26.738 2.365 40.668 hybrid contribution -0.323 0.369 -0.875 1.003 sum 30.227 -26.369 1.490 40.140 Atomic orbital electron populations 1.70058 1.08126 1.28071 1.52874 1.25996 0.95621 1.03402 0.94274 0.85690 0.79423 0.78598 0.79155 1.19299 1.20693 1.17524 1.21558 0.92171 0.93213 1.50005 0.94508 1.19577 0.93849 0.95899 0.96151 1.21346 0.93766 0.96749 1.01357 1.21290 0.94768 0.95541 1.01974 1.21687 0.89245 0.99367 1.06671 1.21152 0.91168 0.82723 0.74189 1.90704 1.71346 1.32806 1.50925 1.45908 1.05976 1.09309 1.75917 1.19602 0.80854 0.87855 1.04063 1.26472 1.07024 1.01357 0.92135 1.65828 1.13654 1.06932 1.33069 1.21313 1.02025 0.90669 0.95171 1.26631 1.08908 1.02447 0.95699 1.83882 1.59067 1.04193 1.10379 1.20411 1.02148 0.86806 0.99164 1.21641 1.01891 0.98059 0.93721 1.21589 0.98361 0.96917 0.98531 1.20475 1.01042 0.93565 0.93010 0.92528 0.96663 0.96909 0.92555 0.92354 0.92665 0.92915 0.86759 0.86299 0.74961 0.88754 0.89976 0.88697 0.88964 0.88640 0.91524 0.91530 0.89009 0.90414 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.88 13.96 21.45 0.30 -60.59 16 2 C 0.00 0.22 5.47 84.66 0.46 0.69 16 3 Si 0.95 46.28 27.47 68.60 1.88 48.16 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.25 -11.66 6.54 99.48 0.65 -11.01 16 7 C -0.53 -31.59 9.66 25.60 0.25 -31.34 16 8 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 9 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 10 C -0.09 -3.66 5.15 30.59 0.16 -3.50 16 11 C -0.10 -3.17 4.50 30.60 0.14 -3.03 16 12 C -0.13 -3.02 5.70 29.85 0.17 -2.85 16 13 C 0.52 13.23 7.83 87.66 0.69 13.91 16 14 O -0.58 -19.85 15.98 -3.04 -0.05 -19.90 16 15 N -0.72 -13.78 5.55 -466.80 -2.59 -16.37 16 16 C 0.20 3.94 6.25 85.63 0.54 4.48 16 17 C 0.01 0.14 6.75 88.57 0.60 0.73 16 18 N -0.48 -9.92 10.51 -177.08 -1.86 -11.78 16 19 C 0.04 0.65 6.78 42.08 0.29 0.94 16 20 C -0.22 -2.82 6.39 24.95 0.16 -2.66 16 21 S 0.17 2.27 23.17 -56.49 -1.31 0.96 16 22 C -0.05 -0.31 6.28 30.04 0.19 -0.12 16 23 C -0.11 -0.55 5.95 30.74 0.18 -0.36 16 24 C -0.12 -0.72 5.87 30.66 0.18 -0.54 16 25 C -0.04 -0.47 6.29 30.32 0.19 -0.28 16 26 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 27 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 28 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 29 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 32 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 33 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.41 6.04 8.46 -92.71 -0.78 5.25 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.07 0.39 8.11 -2.39 -0.02 0.37 16 42 H 0.07 0.44 8.10 -2.39 -0.02 0.42 16 43 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -76.77 379.95 0.82 -75.95 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.14 Total: 8.22 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 4.30 Total: -24.66 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -4.15 Total: -88.73 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.05 Total: -19.90 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.88 Total: 48.16 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.31 Total: 0.96 kcal Total: -76.77 0.82 -75.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806750977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.876 kcal (2) G-P(sol) polarization free energy of solvation -76.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds