Wall clock time and date at job start Tue Mar 31 2020 13:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00348 * 2 1 4 4 H 1.48507 * 109.47340 * 239.99936 * 3 2 1 5 5 H 1.48498 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47572 * 119.99670 * 3 2 1 7 7 C 1.37882 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46957 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46957 * 179.97438 * 10 9 7 12 12 O 1.21303 * 119.99737 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99725 * 180.02562 * 11 10 9 14 14 N 1.40098 * 119.99603 * 180.02562 * 13 11 10 15 15 C 1.30625 * 119.99806 * 173.44145 * 14 13 11 16 16 C 1.48056 * 120.00134 * 173.03694 * 15 14 13 17 17 C 1.39507 * 120.13816 * 169.15422 * 16 15 14 18 18 C 1.37973 * 119.85792 * 179.81557 * 17 16 15 19 19 C 1.38356 * 120.13959 * 0.43871 * 18 17 16 20 20 C 1.38358 * 120.27516 * 359.79220 * 19 18 17 21 21 C 1.37974 * 120.13776 * 359.97438 * 20 19 18 22 22 C 1.48050 * 120.00368 * 353.03871 * 15 14 13 23 23 C 1.39516 * 120.13269 * 314.88981 * 22 15 14 24 24 C 1.37973 * 119.85884 * 179.80991 * 23 22 15 25 25 C 1.38361 * 120.13378 * 0.44444 * 24 23 22 26 26 C 1.38350 * 120.27955 * 359.78648 * 25 24 23 27 27 C 1.37967 * 120.13746 * 359.97438 * 26 25 24 28 28 H 0.97001 * 119.99774 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46901 * 60.00374 * 9 7 2 30 30 H 1.08995 * 109.46750 * 299.99700 * 9 7 2 31 31 H 1.09005 * 109.47151 * 60.00271 * 10 9 7 32 32 H 1.09002 * 109.47440 * 300.00291 * 10 9 7 33 33 H 0.96994 * 120.00429 * 359.97438 * 13 11 10 34 34 H 1.07995 * 120.07044 * 359.97438 * 17 16 15 35 35 H 1.07999 * 119.93189 * 180.20614 * 18 17 16 36 36 H 1.07989 * 119.86121 * 179.76622 * 19 18 17 37 37 H 1.07999 * 119.92931 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.06461 * 179.97438 * 21 20 19 39 39 H 1.08004 * 120.06894 * 359.97438 * 23 22 15 40 40 H 1.07994 * 119.93074 * 180.20650 * 24 23 22 41 41 H 1.08000 * 119.85470 * 179.76706 * 25 24 23 42 42 H 1.07999 * 119.92873 * 179.97438 * 26 25 24 43 43 H 1.08006 * 120.06888 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2786 -4.9671 0.0011 13 7 2.1655 -6.1344 0.0018 14 7 1.4650 -7.3477 0.0018 15 6 2.1117 -8.4753 -0.1268 16 6 1.3949 -9.7616 0.0272 17 6 2.0185 -10.9578 -0.3282 18 6 1.3466 -12.1536 -0.1787 19 6 0.0537 -12.1671 0.3138 20 6 -0.5719 -10.9836 0.6634 21 6 0.0911 -9.7818 0.5232 22 6 3.5616 -8.4671 -0.4264 23 6 4.0691 -7.6155 -1.4080 24 6 5.4218 -7.6097 -1.6800 25 6 6.2730 -8.4528 -0.9879 26 6 5.7751 -9.3031 -0.0167 27 6 4.4251 -9.3147 0.2679 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.8718 -3.6044 0.8906 32 1 2.8719 -3.6044 -0.8894 33 1 3.1355 -6.1345 0.0015 34 1 3.0260 -10.9482 -0.7169 35 1 1.8294 -13.0807 -0.4503 36 1 -0.4694 -13.1052 0.4253 37 1 -1.5814 -11.0006 1.0469 38 1 -0.3985 -8.8586 0.7961 39 1 3.4049 -6.9602 -1.9520 40 1 5.8163 -6.9486 -2.4372 41 1 7.3305 -8.4473 -1.2070 42 1 6.4446 -9.9591 0.5198 43 1 4.0376 -9.9792 1.0260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812448623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:15 Heat of formation + Delta-G solvation = 27.889951 kcal Electronic energy + Delta-G solvation = -25250.966574 eV Core-core repulsion = 21646.683210 eV Total energy + Delta-G solvation = -3604.283364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.29854 -40.41594 -39.59938 -37.58957 -35.61820 -34.44833 -33.08558 -32.19285 -31.90830 -31.22361 -30.80166 -27.78909 -25.47336 -24.00303 -23.65984 -23.34955 -22.95340 -21.42412 -20.99363 -18.98145 -18.64381 -18.07727 -17.45517 -17.20969 -16.72688 -16.49443 -16.27786 -15.91442 -15.66462 -15.41746 -14.97859 -14.75173 -14.58039 -14.44202 -14.32036 -14.24192 -13.94852 -13.59432 -13.31775 -13.09075 -12.79457 -12.76153 -12.54188 -12.34104 -12.05968 -12.03478 -11.99775 -11.71746 -11.37379 -11.32918 -11.00962 -10.73279 -10.57606 -9.96909 -9.88967 -9.86584 -9.17708 -8.19794 -6.34648 -0.42738 0.18771 0.35731 0.47611 1.18467 1.38238 1.43433 1.46370 1.54336 1.79595 2.41700 2.72334 2.94084 3.13239 3.14780 3.59637 3.84669 3.90917 3.98465 4.09355 4.11394 4.23756 4.26310 4.35314 4.40786 4.42118 4.48586 4.53053 4.60519 4.75341 4.86598 4.92830 4.99668 5.05224 5.13203 5.40636 5.43481 5.45506 5.52094 5.53574 5.54085 5.55055 5.58788 5.80412 5.93171 5.98831 6.02818 6.12504 6.46342 6.82952 7.32169 7.35680 8.92970 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.002781 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.325375 B =10065.536431 C =11820.348743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.043 3.957 10 C -0.109 4.109 11 C 0.525 3.475 12 O -0.558 6.558 13 N -0.572 5.572 14 N -0.269 5.269 15 C 0.178 3.822 16 C -0.063 4.063 17 C -0.088 4.088 18 C -0.120 4.120 19 C -0.099 4.099 20 C -0.131 4.131 21 C -0.104 4.104 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.099 4.099 26 C -0.113 4.113 27 C -0.089 4.089 28 H 0.263 0.737 29 H -0.016 1.016 30 H -0.016 1.016 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.401 0.599 34 H 0.144 0.856 35 H 0.161 0.839 36 H 0.155 0.845 37 H 0.139 0.861 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.388 -29.894 -0.903 33.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.006 3.994 10 C -0.150 4.150 11 C 0.315 3.685 12 O -0.432 6.432 13 N -0.317 5.317 14 N -0.073 5.073 15 C -0.009 4.009 16 C -0.066 4.066 17 C -0.108 4.108 18 C -0.138 4.138 19 C -0.118 4.118 20 C -0.149 4.149 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.144 4.144 24 C -0.134 4.134 25 C -0.118 4.118 26 C -0.131 4.131 27 C -0.109 4.109 28 H 0.072 0.928 29 H 0.003 0.997 30 H 0.002 0.998 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.243 0.757 34 H 0.161 0.839 35 H 0.178 0.822 36 H 0.173 0.827 37 H 0.157 0.843 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.162 0.838 41 H 0.174 0.826 42 H 0.177 0.823 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.503 -29.128 -0.781 32.115 hybrid contribution 0.503 1.222 -0.182 1.334 sum 14.006 -27.906 -0.963 31.238 Atomic orbital electron populations 1.70182 1.08405 1.27981 1.51206 1.26173 0.95735 1.04074 0.94506 0.85329 0.78008 0.77081 0.79555 1.18536 1.21376 1.18591 1.21637 0.94090 0.91243 1.51200 0.90248 1.18699 0.93592 0.92159 0.94991 1.21691 0.99461 0.88251 1.05560 1.21719 0.88162 0.84815 0.73829 1.90661 1.16584 1.87631 1.48366 1.47044 1.09170 1.02012 1.73500 1.75338 1.25105 0.91888 1.15013 1.22472 0.91327 0.91522 0.95587 1.18348 0.94401 0.89939 1.03873 1.21502 1.00690 0.90776 0.97867 1.21486 0.94918 0.98338 0.99018 1.21710 0.95249 0.98666 0.96190 1.21376 1.00953 0.91981 1.00554 1.21400 0.93914 0.98983 0.98101 1.19318 0.91569 1.00775 1.00002 1.21336 0.97054 0.98605 0.97420 1.21375 0.92042 0.99624 1.00398 1.21733 1.01299 0.94088 0.94639 1.21535 0.94663 0.99182 0.97678 1.21485 0.93743 0.97078 0.98561 0.92789 0.99719 0.99756 0.87088 0.86891 0.75668 0.83867 0.82180 0.82690 0.84306 0.87663 0.87669 0.83768 0.82639 0.82335 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.43 13.29 21.45 0.28 -60.14 16 2 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 3 Si 0.98 44.58 29.54 68.60 2.03 46.61 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 8 H 0.08 4.10 7.74 -2.91 -0.02 4.08 16 9 C 0.04 2.49 4.26 29.85 0.13 2.61 16 10 C -0.11 -4.60 5.64 29.85 0.17 -4.43 16 11 C 0.53 23.28 7.95 87.66 0.70 23.98 16 12 O -0.56 -30.84 16.32 -3.10 -0.05 -30.89 16 13 N -0.57 -20.38 5.29 -173.51 -0.92 -21.30 16 14 N -0.27 -9.76 10.26 -44.00 -0.45 -10.21 16 15 C 0.18 4.97 6.61 44.54 0.29 5.26 16 16 C -0.06 -1.53 5.76 -20.06 -0.12 -1.64 16 17 C -0.09 -1.47 8.51 22.51 0.19 -1.28 16 18 C -0.12 -1.48 10.03 22.23 0.22 -1.25 16 19 C -0.10 -1.31 10.04 22.33 0.22 -1.09 16 20 C -0.13 -2.44 10.03 22.24 0.22 -2.22 16 21 C -0.10 -2.65 9.57 22.51 0.22 -2.44 16 22 C -0.11 -2.45 4.45 -20.06 -0.09 -2.54 16 23 C -0.12 -2.61 7.70 22.52 0.17 -2.44 16 24 C -0.12 -1.75 10.03 22.24 0.22 -1.53 16 25 C -0.10 -1.08 10.04 22.33 0.22 -0.85 16 26 C -0.11 -1.20 10.03 22.23 0.22 -0.97 16 27 C -0.09 -1.35 7.75 22.51 0.17 -1.18 16 28 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 29 H -0.02 -1.01 8.10 -2.39 -0.02 -1.03 16 30 H -0.02 -1.04 8.10 -2.39 -0.02 -1.06 16 31 H 0.11 4.09 8.14 -2.38 -0.02 4.07 16 32 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 33 H 0.40 11.54 6.06 -213.33 -1.29 10.24 16 34 H 0.14 1.90 6.05 -2.91 -0.02 1.89 16 35 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 36 H 0.16 1.06 8.06 -2.92 -0.02 1.04 16 37 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.11 3.27 7.60 -2.91 -0.02 3.25 16 39 H 0.11 2.61 7.41 -2.91 -0.02 2.59 16 40 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 41 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 42 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 43 H 0.14 1.80 7.34 -2.91 -0.02 1.77 16 Total: -1.00 -84.65 370.34 4.50 -80.16 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -0.27 Total: 18.79 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 3.87 Total: -23.01 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -1.08 Total: -91.66 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.05 Total: -30.89 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -84.65 4.50 -80.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812448623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.046 kcal (2) G-P(sol) polarization free energy of solvation -84.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds