Wall clock time and date at job start Tue Mar 31 2020 13:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48504 * 109.46792 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47212 * 300.00012 * 3 2 1 6 6 H 1.48503 * 109.47093 * 59.99904 * 3 2 1 7 7 C 1.40226 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00132 * 197.87785 * 7 2 1 9 9 C 1.41109 * 119.99739 * 17.88519 * 7 2 1 10 10 C 1.40891 * 120.10108 * 204.62161 * 9 7 2 11 11 C 1.36315 * 119.88915 * 180.02562 * 10 9 7 12 12 C 1.40008 * 120.11081 * 0.02562 * 11 10 9 13 13 C 1.47641 * 119.89940 * 179.97438 * 12 11 10 14 14 O 1.21592 * 119.99776 * 0.02562 * 13 12 11 15 15 N 1.34771 * 120.00498 * 180.02562 * 13 12 11 16 16 N 1.40101 * 120.00633 * 180.02562 * 15 13 12 17 17 C 1.46919 * 120.54259 * 254.98039 * 16 15 13 18 18 C 1.53424 * 107.79525 * 224.76770 * 17 16 15 19 19 C 1.52847 * 108.86705 * 296.84240 * 18 17 16 20 20 C 1.50593 * 110.49444 * 51.31561 * 19 18 17 21 21 C 1.38500 * 118.93535 * 159.48212 * 20 19 18 22 22 C 1.38123 * 120.30492 * 179.59562 * 21 20 19 23 23 C 1.38305 * 120.16170 * 0.26275 * 22 21 20 24 24 C 1.38026 * 119.91090 * 359.54070 * 23 22 21 25 25 C 1.38610 * 121.49860 * 339.23316 * 20 19 18 26 26 C 1.40011 * 120.20794 * 0.25785 * 12 11 10 27 27 C 1.36323 * 120.10378 * 359.43757 * 26 12 11 28 28 H 0.97000 * 120.00226 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.05246 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.94511 * 180.02562 * 11 10 9 31 31 H 0.97002 * 119.99844 * 0.02562 * 15 13 12 32 32 H 1.09001 * 109.79666 * 344.34642 * 17 16 15 33 33 H 1.09001 * 109.79549 * 105.13870 * 17 16 15 34 34 H 1.09005 * 109.57313 * 56.65427 * 18 17 16 35 35 H 1.09001 * 109.57887 * 176.89762 * 18 17 16 36 36 H 1.09001 * 109.26784 * 291.05342 * 19 18 17 37 37 H 1.08999 * 109.26849 * 171.57512 * 19 18 17 38 38 H 1.08000 * 119.84436 * 359.56112 * 21 20 19 39 39 H 1.07998 * 119.91756 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.04426 * 179.78091 * 23 22 21 41 41 H 1.08006 * 119.98178 * 180.27797 * 24 23 22 42 42 H 1.08004 * 119.94778 * 179.70324 * 26 12 11 43 43 H 1.08004 * 120.05230 * 180.27892 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0075 -1.2144 0.0005 8 1 3.0485 -1.2369 0.2877 9 6 1.3531 -2.4070 -0.3742 10 6 1.8267 -3.6494 0.0918 11 6 1.1915 -4.7989 -0.2734 12 6 0.0705 -4.7464 -1.1105 13 6 -0.6136 -5.9943 -1.5036 14 8 -0.2036 -7.0655 -1.0999 15 7 -1.6926 -5.9463 -2.3098 16 7 -2.3421 -7.1305 -2.6823 17 6 -2.1767 -7.6789 -4.0352 18 6 -3.5622 -8.0976 -4.5441 19 6 -4.1022 -9.2114 -3.6474 20 6 -4.0211 -8.8080 -2.1988 21 6 -4.8252 -9.4568 -1.2765 22 6 -4.7677 -9.1152 0.0606 23 6 -3.9094 -8.1180 0.4868 24 6 -3.1015 -7.4691 -0.4251 25 6 -3.1591 -7.8099 -1.7721 26 6 -0.4003 -3.5146 -1.5810 27 6 0.2246 -2.3593 -1.2162 28 1 -0.4850 0.8400 0.0004 29 1 2.6916 -3.6909 0.7373 30 1 1.5535 -5.7517 0.0837 31 1 -2.0195 -5.0918 -2.6321 32 1 -1.7561 -6.9183 -4.6930 33 1 -1.5165 -8.5457 -4.0040 34 1 -4.2372 -7.2424 -4.5107 35 1 -3.4810 -8.4587 -5.5693 36 1 -3.5135 -10.1155 -3.8027 37 1 -5.1418 -9.4105 -3.9077 38 1 -5.5008 -10.2330 -1.6044 39 1 -5.3979 -9.6249 0.7744 40 1 -3.8685 -7.8500 1.5322 41 1 -2.4275 -6.6933 -0.0929 42 1 -1.2626 -3.4794 -2.2305 43 1 -0.1421 -1.4092 -1.5760 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816495128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:57 Heat of formation + Delta-G solvation = 41.232764 kcal Electronic energy + Delta-G solvation = -26076.400786 eV Core-core repulsion = 22472.696010 eV Total energy + Delta-G solvation = -3603.704776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.23087 -38.77870 -37.21899 -36.28403 -34.38300 -33.95346 -31.63758 -30.35067 -30.10268 -29.53185 -28.87622 -26.07320 -24.60579 -23.12778 -22.59089 -21.65843 -20.98586 -20.13409 -19.22839 -17.80336 -17.55686 -16.91657 -16.21252 -15.77996 -15.50720 -14.91653 -14.40831 -14.32972 -14.06352 -13.77166 -13.64742 -13.46157 -13.25527 -13.14759 -12.86368 -12.78035 -12.31616 -12.19800 -12.01368 -11.49891 -11.46103 -11.33938 -11.22830 -11.02237 -10.82742 -10.75327 -10.66218 -10.12495 -9.97796 -9.64544 -9.42312 -9.09053 -8.99910 -8.52480 -7.81210 -7.64221 -7.17281 -7.10564 -4.68094 1.58864 1.77564 2.12963 2.25504 2.85513 2.91086 2.95974 2.96890 3.68544 3.76617 4.00945 4.41934 4.48020 4.76406 4.78294 4.86540 5.08750 5.27766 5.30060 5.41781 5.48771 5.55188 5.61387 5.67018 5.78421 5.85490 5.87050 5.94469 6.04587 6.05846 6.23605 6.26194 6.52479 6.67662 6.69899 6.75228 6.81574 6.92225 7.02550 7.04938 7.34844 7.47327 7.54850 7.66578 7.78216 7.88840 7.99225 8.05518 8.31991 8.55390 8.66833 9.10543 9.80646 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022421 B = 0.002755 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.553499 B =10160.135782 C =10423.406446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.439 4.439 8 H 0.086 0.914 9 C 0.129 3.871 10 C -0.238 4.238 11 C -0.018 4.018 12 C -0.282 4.282 13 C 0.568 3.432 14 O -0.554 6.554 15 N -0.529 5.529 16 N -0.432 5.432 17 C 0.136 3.864 18 C -0.135 4.135 19 C -0.069 4.069 20 C -0.154 4.154 21 C -0.084 4.084 22 C -0.174 4.174 23 C -0.084 4.084 24 C -0.161 4.161 25 C 0.228 3.772 26 C -0.062 4.062 27 C -0.177 4.177 28 H 0.287 0.713 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.409 0.591 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.088 0.912 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.927 -8.996 -6.815 14.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.104 0.896 9 C 0.126 3.874 10 C -0.257 4.257 11 C -0.037 4.037 12 C -0.288 4.288 13 C 0.363 3.637 14 O -0.433 6.433 15 N -0.277 5.277 16 N -0.235 5.235 17 C 0.013 3.987 18 C -0.173 4.173 19 C -0.106 4.106 20 C -0.160 4.160 21 C -0.103 4.103 22 C -0.193 4.193 23 C -0.103 4.103 24 C -0.183 4.183 25 C 0.128 3.872 26 C -0.082 4.082 27 C -0.196 4.196 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.251 0.749 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.106 0.894 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.721 -9.478 -6.644 14.492 hybrid contribution 0.167 1.272 -0.012 1.283 sum -8.554 -8.205 -6.656 13.594 Atomic orbital electron populations 1.69742 1.07949 1.30122 1.31298 1.26124 0.94830 1.01998 0.91857 0.86157 0.81128 0.80086 0.78932 1.18004 1.19328 1.19597 1.19918 0.98491 0.91151 1.37028 0.89552 1.17799 0.90310 0.92204 0.87100 1.20712 1.04639 0.92543 1.07828 1.20333 0.92686 0.97253 0.93457 1.18701 1.04742 0.90181 1.15177 1.19086 0.77828 0.90186 0.76585 1.90686 1.65430 1.31365 1.55777 1.45130 1.29269 0.99603 1.53705 1.45476 1.48408 1.18956 1.10618 1.21783 0.96907 0.98587 0.81411 1.21906 0.96766 0.99473 0.99187 1.20277 1.01488 0.98092 0.90771 1.19192 1.00142 1.00791 0.95831 1.20722 0.98147 0.98631 0.92779 1.20813 1.02266 1.00539 0.95725 1.20902 0.95001 0.95402 0.99012 1.20863 1.02211 1.03873 0.91349 1.17606 0.89049 0.91664 0.88916 1.20463 0.97347 0.92578 0.97785 1.20974 0.99875 0.96886 1.01850 0.90157 0.88244 0.88047 0.74921 0.89951 0.91903 0.91009 0.90056 0.91105 0.90772 0.86429 0.86684 0.86346 0.85991 0.89384 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.93 10.95 55.56 0.61 -17.32 16 2 C 0.07 1.67 5.13 -17.31 -0.09 1.58 16 3 Si 0.91 16.83 29.60 -169.99 -5.03 11.80 16 4 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 5 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 6 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 7 C -0.44 -10.62 9.04 -37.75 -0.34 -10.97 16 8 H 0.09 2.00 7.91 -52.48 -0.42 1.59 16 9 C 0.13 3.20 5.57 -106.80 -0.60 2.61 16 10 C -0.24 -5.61 9.73 -39.27 -0.38 -6.00 16 11 C -0.02 -0.41 9.52 -39.61 -0.38 -0.79 16 12 C -0.28 -6.27 5.89 -104.73 -0.62 -6.88 16 13 C 0.57 12.01 6.23 -12.42 -0.08 11.94 16 14 O -0.55 -13.32 15.67 5.28 0.08 -13.24 16 15 N -0.53 -9.26 5.47 30.48 0.17 -9.09 16 16 N -0.43 -6.98 3.22 -58.09 -0.19 -7.17 16 17 C 0.14 1.71 6.78 -3.59 -0.02 1.68 16 18 C -0.13 -1.29 6.11 -26.59 -0.16 -1.46 16 19 C -0.07 -0.71 5.78 -28.01 -0.16 -0.87 16 20 C -0.15 -2.12 5.76 -104.44 -0.60 -2.72 16 21 C -0.08 -1.05 9.66 -39.53 -0.38 -1.44 16 22 C -0.17 -2.27 10.04 -39.60 -0.40 -2.67 16 23 C -0.08 -1.28 10.05 -39.63 -0.40 -1.68 16 24 C -0.16 -2.86 8.80 -39.35 -0.35 -3.21 16 25 C 0.23 3.78 6.29 -83.72 -0.53 3.26 16 26 C -0.06 -1.34 9.47 -39.61 -0.38 -1.71 16 27 C -0.18 -4.19 8.64 -39.27 -0.34 -4.53 16 28 H 0.29 6.00 8.29 -40.82 -0.34 5.66 16 29 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.10 2.28 7.63 -52.48 -0.40 1.88 16 31 H 0.41 6.31 6.83 -182.59 -1.25 5.06 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.63 8.12 -51.93 -0.42 0.20 16 38 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.12 2.46 5.91 -52.48 -0.31 2.15 16 42 H 0.09 1.59 6.37 -52.48 -0.33 1.25 16 43 H 0.12 2.91 6.16 -52.48 -0.32 2.58 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -28.81 354.89 -11.60 -40.41 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -6.39 Total: 13.12 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -6.19 Total: -23.85 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.59 Total: -33.58 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.80 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.81 -11.60 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816495128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.644 kcal (2) G-P(sol) polarization free energy of solvation -28.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds