Wall clock time and date at job start Tue Mar 31 2020 13:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48504 * 109.46792 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47212 * 300.00012 * 3 2 1 6 6 H 1.48503 * 109.47093 * 59.99904 * 3 2 1 7 7 C 1.40226 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00132 * 197.87785 * 7 2 1 9 9 C 1.41109 * 119.99739 * 17.88519 * 7 2 1 10 10 C 1.40891 * 120.10108 * 204.62161 * 9 7 2 11 11 C 1.36315 * 119.88915 * 180.02562 * 10 9 7 12 12 C 1.40008 * 120.11081 * 0.02562 * 11 10 9 13 13 C 1.47641 * 119.89940 * 179.97438 * 12 11 10 14 14 O 1.21592 * 119.99776 * 0.02562 * 13 12 11 15 15 N 1.34771 * 120.00498 * 180.02562 * 13 12 11 16 16 N 1.40101 * 120.00633 * 180.02562 * 15 13 12 17 17 C 1.46919 * 120.54259 * 254.98039 * 16 15 13 18 18 C 1.53424 * 107.79525 * 224.76770 * 17 16 15 19 19 C 1.52847 * 108.86705 * 296.84240 * 18 17 16 20 20 C 1.50593 * 110.49444 * 51.31561 * 19 18 17 21 21 C 1.38500 * 118.93535 * 159.48212 * 20 19 18 22 22 C 1.38123 * 120.30492 * 179.59562 * 21 20 19 23 23 C 1.38305 * 120.16170 * 0.26275 * 22 21 20 24 24 C 1.38026 * 119.91090 * 359.54070 * 23 22 21 25 25 C 1.38610 * 121.49860 * 339.23316 * 20 19 18 26 26 C 1.40011 * 120.20794 * 0.25785 * 12 11 10 27 27 C 1.36323 * 120.10378 * 359.43757 * 26 12 11 28 28 H 0.97000 * 120.00226 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.05246 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.94511 * 180.02562 * 11 10 9 31 31 H 0.97002 * 119.99844 * 0.02562 * 15 13 12 32 32 H 1.09001 * 109.79666 * 344.34642 * 17 16 15 33 33 H 1.09001 * 109.79549 * 105.13870 * 17 16 15 34 34 H 1.09005 * 109.57313 * 56.65427 * 18 17 16 35 35 H 1.09001 * 109.57887 * 176.89762 * 18 17 16 36 36 H 1.09001 * 109.26784 * 291.05342 * 19 18 17 37 37 H 1.08999 * 109.26849 * 171.57512 * 19 18 17 38 38 H 1.08000 * 119.84436 * 359.56112 * 21 20 19 39 39 H 1.07998 * 119.91756 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.04426 * 179.78091 * 23 22 21 41 41 H 1.08006 * 119.98178 * 180.27797 * 24 23 22 42 42 H 1.08004 * 119.94778 * 179.70324 * 26 12 11 43 43 H 1.08004 * 120.05230 * 180.27892 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0075 -1.2144 0.0005 8 1 3.0485 -1.2369 0.2877 9 6 1.3531 -2.4070 -0.3742 10 6 1.8267 -3.6494 0.0918 11 6 1.1915 -4.7989 -0.2734 12 6 0.0705 -4.7464 -1.1105 13 6 -0.6136 -5.9943 -1.5036 14 8 -0.2036 -7.0655 -1.0999 15 7 -1.6926 -5.9463 -2.3098 16 7 -2.3421 -7.1305 -2.6823 17 6 -2.1767 -7.6789 -4.0352 18 6 -3.5622 -8.0976 -4.5441 19 6 -4.1022 -9.2114 -3.6474 20 6 -4.0211 -8.8080 -2.1988 21 6 -4.8252 -9.4568 -1.2765 22 6 -4.7677 -9.1152 0.0606 23 6 -3.9094 -8.1180 0.4868 24 6 -3.1015 -7.4691 -0.4251 25 6 -3.1591 -7.8099 -1.7721 26 6 -0.4003 -3.5146 -1.5810 27 6 0.2246 -2.3593 -1.2162 28 1 -0.4850 0.8400 0.0004 29 1 2.6916 -3.6909 0.7373 30 1 1.5535 -5.7517 0.0837 31 1 -2.0195 -5.0918 -2.6321 32 1 -1.7561 -6.9183 -4.6930 33 1 -1.5165 -8.5457 -4.0040 34 1 -4.2372 -7.2424 -4.5107 35 1 -3.4810 -8.4587 -5.5693 36 1 -3.5135 -10.1155 -3.8027 37 1 -5.1418 -9.4105 -3.9077 38 1 -5.5008 -10.2330 -1.6044 39 1 -5.3979 -9.6249 0.7744 40 1 -3.8685 -7.8500 1.5322 41 1 -2.4275 -6.6933 -0.0929 42 1 -1.2626 -3.4794 -2.2305 43 1 -0.1421 -1.4092 -1.5760 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816495128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:57 Heat of formation + Delta-G solvation = 27.553505 kcal Electronic energy + Delta-G solvation = -26076.993963 eV Core-core repulsion = 22472.696010 eV Total energy + Delta-G solvation = -3604.297953 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48820 -40.29575 -38.91628 -37.47185 -35.72505 -35.60445 -33.05321 -31.69602 -31.36236 -31.35015 -30.06506 -27.76037 -25.74250 -24.19620 -23.99696 -23.08757 -22.70597 -21.65641 -20.34050 -19.43406 -19.12224 -18.38655 -17.45380 -17.24246 -16.78434 -16.10634 -15.81694 -15.77001 -15.69736 -15.12038 -14.90908 -14.81877 -14.55205 -14.33815 -14.23199 -13.98380 -13.83839 -13.75241 -13.27688 -13.24835 -12.88111 -12.67752 -12.44975 -12.41476 -12.11391 -11.80956 -11.76372 -11.67228 -11.43234 -11.23803 -11.13396 -10.70875 -10.45506 -9.63812 -9.61158 -9.48774 -8.83584 -8.34243 -6.52767 0.36212 0.48219 0.65879 0.99193 1.10447 1.37128 1.40803 1.54759 2.04845 2.15477 2.72593 2.90703 3.16801 3.63848 3.82070 3.89090 4.01539 4.08143 4.18646 4.23270 4.27306 4.38228 4.40877 4.50377 4.62156 4.65664 4.79136 4.82685 4.87884 4.98828 5.03940 5.06204 5.09916 5.21210 5.24061 5.31345 5.40036 5.53087 5.62007 5.70588 5.73758 5.85505 5.94543 5.97741 6.17108 6.30216 6.47439 6.50523 6.53351 6.72635 6.83410 7.55055 8.11749 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022421 B = 0.002755 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.553499 B =10160.135782 C =10423.406446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.257 1.257 5 H -0.259 1.259 6 H -0.264 1.264 7 C -0.468 4.468 8 H 0.087 0.913 9 C 0.103 3.897 10 C -0.251 4.251 11 C -0.029 4.029 12 C -0.290 4.290 13 C 0.573 3.427 14 O -0.589 6.589 15 N -0.518 5.518 16 N -0.440 5.440 17 C 0.127 3.873 18 C -0.123 4.123 19 C -0.070 4.070 20 C -0.154 4.154 21 C -0.080 4.080 22 C -0.170 4.170 23 C -0.100 4.100 24 C -0.198 4.198 25 C 0.199 3.801 26 C -0.052 4.052 27 C -0.195 4.195 28 H 0.298 0.702 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.419 0.581 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.157 0.843 39 H 0.145 0.855 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.054 -9.744 -8.634 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.183 1.183 6 H -0.189 1.189 7 C -0.495 4.495 8 H 0.105 0.895 9 C 0.100 3.900 10 C -0.270 4.270 11 C -0.048 4.048 12 C -0.296 4.296 13 C 0.367 3.633 14 O -0.471 6.471 15 N -0.264 5.264 16 N -0.244 5.244 17 C 0.005 3.995 18 C -0.162 4.162 19 C -0.107 4.107 20 C -0.159 4.159 21 C -0.098 4.098 22 C -0.190 4.190 23 C -0.119 4.119 24 C -0.220 4.220 25 C 0.099 3.901 26 C -0.071 4.071 27 C -0.214 4.214 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.263 0.737 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.121 0.879 38 H 0.175 0.825 39 H 0.163 0.837 40 H 0.142 0.858 41 H 0.102 0.898 42 H 0.140 0.860 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.886 -10.231 -8.490 17.183 hybrid contribution 0.724 1.372 0.584 1.657 sum -10.162 -8.860 -7.906 15.629 Atomic orbital electron populations 1.69758 1.09273 1.31738 1.31020 1.26950 0.95549 1.04899 0.90774 0.85052 0.79460 0.75393 0.79302 1.18004 1.18344 1.18853 1.20178 0.98816 0.92139 1.38331 0.89502 1.18136 0.91172 0.92844 0.87836 1.20841 1.05198 0.92615 1.08391 1.20450 0.93331 0.97068 0.93970 1.18937 1.04594 0.91272 1.14813 1.18873 0.78516 0.89103 0.76829 1.90653 1.66817 1.32338 1.57252 1.44769 1.28030 1.01211 1.52384 1.45869 1.48101 1.18675 1.11772 1.22081 0.99158 0.98419 0.79809 1.21895 0.94288 0.99327 1.00661 1.20414 1.03521 0.98440 0.88286 1.19709 0.98744 0.99159 0.98287 1.21233 0.97770 0.98627 0.92209 1.21195 1.01414 0.99365 0.96994 1.21095 0.95461 0.96218 0.99077 1.20787 1.03488 1.04710 0.93043 1.17943 0.90421 0.93128 0.88572 1.20697 0.97695 0.91456 0.97278 1.21007 1.00438 0.97347 1.02642 0.89049 0.87640 0.88210 0.73721 0.88971 0.92806 0.91154 0.86606 0.90040 0.87884 0.82496 0.83689 0.85813 0.89778 0.86022 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.43 10.95 21.87 0.24 -37.19 16 2 C 0.04 1.73 5.13 85.35 0.44 2.16 16 3 Si 0.99 34.18 29.60 68.60 2.03 36.21 16 4 H -0.26 -8.79 7.11 99.48 0.71 -8.09 16 5 H -0.26 -8.53 7.11 99.48 0.71 -7.83 16 6 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 7 C -0.47 -23.31 9.04 23.46 0.21 -23.10 16 8 H 0.09 4.16 7.91 -2.91 -0.02 4.13 16 9 C 0.10 5.32 5.57 -21.28 -0.12 5.21 16 10 C -0.25 -12.45 9.73 22.47 0.22 -12.23 16 11 C -0.03 -1.40 9.52 22.25 0.21 -1.19 16 12 C -0.29 -13.40 5.89 -19.94 -0.12 -13.52 16 13 C 0.57 25.17 6.23 86.73 0.54 25.71 16 14 O -0.59 -29.70 15.67 -4.01 -0.06 -29.76 16 15 N -0.52 -18.45 5.47 -175.73 -0.96 -19.41 16 16 N -0.44 -14.16 3.22 -337.71 -1.09 -15.24 16 17 C 0.13 2.99 6.78 86.44 0.59 3.58 16 18 C -0.12 -1.94 6.11 30.69 0.19 -1.76 16 19 C -0.07 -1.15 5.78 29.76 0.17 -0.98 16 20 C -0.15 -3.86 5.76 -19.75 -0.11 -3.97 16 21 C -0.08 -1.73 9.66 22.30 0.22 -1.52 16 22 C -0.17 -4.08 10.04 22.26 0.22 -3.86 16 23 C -0.10 -3.06 10.05 22.24 0.22 -2.84 16 24 C -0.20 -7.34 8.80 22.42 0.20 -7.14 16 25 C 0.20 6.58 6.29 38.14 0.24 6.82 16 26 C -0.05 -2.28 9.47 22.25 0.21 -2.07 16 27 C -0.20 -9.53 8.64 22.47 0.19 -9.34 16 28 H 0.30 12.41 8.29 -92.71 -0.77 11.64 16 29 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 30 H 0.10 4.78 7.63 -2.91 -0.02 4.76 16 31 H 0.42 12.93 6.83 -213.32 -1.46 11.47 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.10 1.17 8.12 -2.39 -0.02 1.15 16 38 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 40 H 0.12 3.44 8.06 -2.91 -0.02 3.42 16 41 H 0.08 3.67 5.91 -2.91 -0.02 3.66 16 42 H 0.12 4.35 6.37 -2.91 -0.02 4.33 16 43 H 0.12 5.71 6.16 -2.91 -0.02 5.69 16 Total: -1.00 -66.39 354.89 3.47 -62.92 By element: Atomic # 1 Polarization: 42.91 SS G_CDS: -0.41 Total: 42.50 kcal Atomic # 6 Polarization: -43.75 SS G_CDS: 3.72 Total: -40.03 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: -1.81 Total: -71.85 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.06 Total: -29.76 kcal Atomic # 14 Polarization: 34.18 SS G_CDS: 2.03 Total: 36.21 kcal Total: -66.39 3.47 -62.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816495128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.476 kcal (2) G-P(sol) polarization free energy of solvation -66.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds