Wall clock time and date at job start Tue Mar 31 2020 13:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 119.99937 * 2 1 4 4 H 1.48497 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47009 * 300.00094 * 3 2 1 6 6 H 1.48497 * 109.47058 * 60.00075 * 3 2 1 7 7 C 1.39944 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00520 * 170.02521 * 7 2 1 9 9 C 1.41400 * 119.99468 * 350.02958 * 7 2 1 10 10 C 1.40734 * 120.24762 * 330.29503 * 9 7 2 11 11 C 1.37588 * 119.74828 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24832 * 359.73024 * 11 10 9 13 13 C 1.38608 * 120.49905 * 0.55174 * 12 11 10 14 14 C 1.37644 * 120.25182 * 359.44586 * 13 12 11 15 15 C 1.50696 * 120.13071 * 180.29762 * 14 13 12 16 16 C 1.50700 * 109.47116 * 265.00107 * 15 14 13 17 17 O 1.21284 * 120.00047 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00126 * 180.02562 * 16 15 14 19 19 C 1.39410 * 119.99850 * 174.97448 * 18 16 15 20 20 C 1.39061 * 119.72669 * 185.36564 * 19 18 16 21 21 C 1.38314 * 119.05341 * 179.77426 * 20 19 18 22 22 C 1.38704 * 118.67542 * 0.50272 * 21 20 19 23 23 C 1.38201 * 119.16418 * 359.74169 * 22 21 20 24 24 N 1.31896 * 120.86629 * 0.02562 * 23 22 21 25 25 C 1.51208 * 109.63711 * 179.73768 * 22 21 20 26 26 C 1.54393 * 105.21330 * 17.10494 * 25 22 21 27 27 C 1.51065 * 131.47982 * 180.20041 * 21 20 19 28 28 H 0.97000 * 120.00339 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.12397 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.88070 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.75099 * 180.29707 * 12 11 10 32 32 H 1.08001 * 119.87701 * 179.72172 * 13 12 11 33 33 H 1.08998 * 109.47136 * 24.99987 * 15 14 13 34 34 H 1.08995 * 109.47006 * 145.00438 * 15 14 13 35 35 H 0.96998 * 120.00101 * 354.97775 * 18 16 15 36 36 H 1.08006 * 120.47676 * 0.02562 * 20 19 18 37 37 H 1.08005 * 119.56468 * 180.02562 * 23 22 21 38 38 H 1.09005 * 110.29898 * 136.03478 * 25 22 21 39 39 H 1.08998 * 110.29775 * 258.07763 * 25 22 21 40 40 H 1.08997 * 110.80422 * 92.01898 * 26 25 22 41 41 H 1.09005 * 110.80568 * 215.33159 * 26 25 22 42 42 H 1.09004 * 110.30620 * 44.29447 * 27 21 20 43 43 H 1.09002 * 110.38771 * 282.17979 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0757 -1.2189 -0.1625 9 6 1.3170 -2.4273 0.2109 10 6 0.1533 -2.4528 1.0020 11 6 -0.5107 -3.6412 1.2014 12 6 -0.0405 -4.8099 0.6219 13 6 1.1078 -4.7976 -0.1543 14 6 1.7882 -3.6202 -0.3674 15 6 3.0326 -3.6089 -1.2173 16 6 4.2464 -3.7302 -0.3324 17 8 4.1139 -3.8168 0.8701 18 7 5.4791 -3.7414 -0.8771 19 6 6.6046 -3.7478 -0.0544 20 6 7.8716 -3.6464 -0.6186 21 6 8.9784 -3.6495 0.2109 22 6 8.7841 -3.7646 1.5795 23 6 7.4964 -3.8668 2.0707 24 7 6.4588 -3.8565 1.2565 25 6 10.1213 -3.7522 2.2853 26 6 11.1188 -3.1829 1.2536 27 6 10.4553 -3.5519 -0.0910 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2171 -1.5430 1.4507 30 1 -1.4037 -3.6633 1.8084 31 1 -0.5708 -5.7374 0.7798 32 1 1.4675 -5.7145 -0.5972 33 1 3.0050 -4.4474 -1.9131 34 1 3.0823 -2.6744 -1.7761 35 1 5.5832 -3.7449 -1.8414 36 1 7.9895 -3.5623 -1.6889 37 1 7.3377 -3.9564 3.1352 38 1 10.0788 -3.1094 3.1646 39 1 10.4073 -4.7644 2.5712 40 1 11.2081 -2.1015 1.3573 41 1 12.0932 -3.6615 1.3521 42 1 10.6396 -2.7724 -0.8303 43 1 10.8337 -4.5093 -0.4493 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818982551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:12 Heat of formation + Delta-G solvation = 23.174727 kcal Electronic energy + Delta-G solvation = -25985.193668 eV Core-core repulsion = 22380.705836 eV Total energy + Delta-G solvation = -3604.487831 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.86942 -39.20381 -37.48462 -36.43751 -34.14477 -33.55561 -31.77438 -31.40933 -29.48298 -29.35862 -27.76203 -26.46148 -24.95181 -23.62077 -22.14087 -21.12164 -20.88335 -20.10016 -19.34904 -17.49170 -17.05047 -16.82845 -15.94005 -15.54256 -15.41639 -15.05333 -14.79609 -14.54472 -14.31213 -13.76087 -13.58889 -13.19969 -13.16399 -12.97086 -12.90665 -12.55060 -12.23958 -11.74188 -11.59832 -11.52499 -11.43521 -11.34302 -11.14697 -11.02804 -10.97577 -10.62820 -10.34254 -10.18589 -9.67794 -9.46475 -9.38402 -9.33003 -9.17639 -8.68607 -7.94526 -7.28545 -7.21460 -6.65357 -4.32798 1.21500 1.37851 2.78304 2.94465 3.10096 3.15907 3.28147 3.29488 3.32480 3.98308 4.03282 4.22778 4.34091 4.67375 4.73394 4.74768 4.93373 4.98686 5.16641 5.34067 5.44407 5.46442 5.54472 5.55379 5.71312 5.77832 5.85277 5.89200 5.96429 6.01043 6.13503 6.30103 6.31984 6.42346 6.47591 6.53523 6.81368 6.98393 7.14208 7.32533 7.45333 7.51523 7.70168 7.94436 8.11089 8.15472 8.32403 8.35323 8.69099 8.84358 8.96243 9.04574 10.28542 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.003510 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.002755 B = 7975.600365 C = 9160.496459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.457 4.457 8 H 0.073 0.927 9 C 0.129 3.871 10 C -0.152 4.152 11 C -0.109 4.109 12 C -0.234 4.234 13 C -0.083 4.083 14 C -0.180 4.180 15 C -0.068 4.068 16 C 0.500 3.500 17 O -0.448 6.448 18 N -0.671 5.671 19 C 0.373 3.627 20 C -0.205 4.205 21 C -0.032 4.032 22 C -0.198 4.198 23 C 0.149 3.851 24 N -0.470 5.470 25 C -0.069 4.069 26 C -0.120 4.120 27 C -0.081 4.081 28 H 0.278 0.722 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.412 0.588 36 H 0.131 0.869 37 H 0.153 0.847 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.657 -4.645 -2.883 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.487 4.487 8 H 0.091 0.909 9 C 0.127 3.873 10 C -0.171 4.171 11 C -0.127 4.127 12 C -0.254 4.254 13 C -0.101 4.101 14 C -0.181 4.181 15 C -0.108 4.108 16 C 0.286 3.714 17 O -0.314 6.314 18 N -0.318 5.318 19 C 0.141 3.859 20 C -0.229 4.229 21 C -0.040 4.040 22 C -0.202 4.202 23 C -0.010 4.010 24 N -0.184 5.184 25 C -0.107 4.107 26 C -0.158 4.158 27 C -0.118 4.118 28 H 0.089 0.911 29 H 0.137 0.863 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.248 0.752 36 H 0.149 0.851 37 H 0.171 0.829 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.338 -4.588 -1.688 18.014 hybrid contribution 1.117 0.880 -0.915 1.691 sum 18.455 -3.708 -2.604 19.003 Atomic orbital electron populations 1.69795 1.07300 1.28737 1.37112 1.25843 0.94768 1.00987 0.92496 0.86321 0.80854 0.81390 0.78509 1.18696 1.20011 1.19771 1.19490 0.95326 0.90348 1.43530 0.90916 1.17355 0.91113 0.91295 0.87586 1.21344 0.98316 0.96436 1.01019 1.20703 0.98604 0.93671 0.99764 1.20332 1.00478 0.96744 1.07817 1.20307 0.95656 0.95419 0.98724 1.19069 0.98203 0.94733 1.06138 1.20290 0.90330 1.03209 0.96949 1.21613 0.83226 0.76101 0.90460 1.90792 1.84732 1.41074 1.14787 1.44061 1.04599 1.73662 1.09522 1.18522 0.85950 0.92748 0.88647 1.20845 0.90626 1.10770 1.00666 1.20511 0.95113 0.94635 0.93727 1.21409 0.96076 1.07200 0.95479 1.22156 0.86075 0.93190 0.99545 1.67840 1.32996 1.15194 1.02364 1.20852 0.90344 1.01489 0.98052 1.22317 0.98231 1.01404 0.93835 1.21023 0.89867 1.02391 0.98545 0.91134 0.86328 0.89516 0.89597 0.89698 0.90372 0.88255 0.75179 0.85113 0.82946 0.90734 0.90494 0.90905 0.90490 0.90377 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.08 10.86 55.55 0.60 -20.48 16 2 C 0.08 1.93 5.26 -17.34 -0.09 1.83 16 3 Si 0.90 19.40 29.57 -169.99 -5.03 14.38 16 4 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.46 -12.26 8.06 -37.74 -0.30 -12.56 16 8 H 0.07 1.93 6.79 -52.49 -0.36 1.58 16 9 C 0.13 3.49 5.54 -106.82 -0.59 2.90 16 10 C -0.15 -4.12 8.65 -38.88 -0.34 -4.46 16 11 C -0.11 -2.70 10.02 -39.66 -0.40 -3.09 16 12 C -0.23 -5.53 10.05 -39.29 -0.39 -5.92 16 13 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 14 C -0.18 -4.36 4.43 -103.91 -0.46 -4.82 16 15 C -0.07 -1.33 5.19 -29.04 -0.15 -1.48 16 16 C 0.50 10.13 7.40 -10.99 -0.08 10.05 16 17 O -0.45 -11.23 14.30 5.55 0.08 -11.15 16 18 N -0.67 -10.64 5.39 -11.42 -0.06 -10.71 16 19 C 0.37 6.15 7.42 -154.69 -1.15 5.01 16 20 C -0.21 -2.62 9.95 -39.25 -0.39 -3.01 16 21 C -0.03 -0.37 6.20 -104.24 -0.65 -1.02 16 22 C -0.20 -2.44 6.18 -104.21 -0.64 -3.08 16 23 C 0.15 2.25 11.18 -17.54 -0.20 2.06 16 24 N -0.47 -8.87 7.89 -12.34 -0.10 -8.96 16 25 C -0.07 -0.60 6.76 -26.90 -0.18 -0.78 16 26 C -0.12 -0.86 7.08 -25.26 -0.18 -1.03 16 27 C -0.08 -0.65 6.76 -26.97 -0.18 -0.84 16 28 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 29 H 0.12 3.32 6.27 -52.49 -0.33 2.99 16 30 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 34 H 0.10 1.89 7.12 -51.93 -0.37 1.52 16 35 H 0.41 4.63 8.70 -40.82 -0.36 4.28 16 36 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 37 H 0.15 1.99 8.06 -52.48 -0.42 1.57 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 359.52 15.07 5.42 5.42 Total: -1.00 -33.81 359.52 -11.46 -45.27 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.61 Total: 8.80 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -6.76 Total: -22.57 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.44 Total: -40.15 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.15 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.81 -11.46 -45.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818982551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.442 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds