Wall clock time and date at job start Tue Mar 31 2020 13:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 119.99937 * 2 1 4 4 H 1.48497 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47009 * 300.00094 * 3 2 1 6 6 H 1.48497 * 109.47058 * 60.00075 * 3 2 1 7 7 C 1.39944 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00520 * 170.02521 * 7 2 1 9 9 C 1.41400 * 119.99468 * 350.02958 * 7 2 1 10 10 C 1.40734 * 120.24762 * 330.29503 * 9 7 2 11 11 C 1.37588 * 119.74828 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24832 * 359.73024 * 11 10 9 13 13 C 1.38608 * 120.49905 * 0.55174 * 12 11 10 14 14 C 1.37644 * 120.25182 * 359.44586 * 13 12 11 15 15 C 1.50696 * 120.13071 * 180.29762 * 14 13 12 16 16 C 1.50700 * 109.47116 * 265.00107 * 15 14 13 17 17 O 1.21284 * 120.00047 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00126 * 180.02562 * 16 15 14 19 19 C 1.39410 * 119.99850 * 174.97448 * 18 16 15 20 20 C 1.39061 * 119.72669 * 185.36564 * 19 18 16 21 21 C 1.38314 * 119.05341 * 179.77426 * 20 19 18 22 22 C 1.38704 * 118.67542 * 0.50272 * 21 20 19 23 23 C 1.38201 * 119.16418 * 359.74169 * 22 21 20 24 24 N 1.31896 * 120.86629 * 0.02562 * 23 22 21 25 25 C 1.51208 * 109.63711 * 179.73768 * 22 21 20 26 26 C 1.54393 * 105.21330 * 17.10494 * 25 22 21 27 27 C 1.51065 * 131.47982 * 180.20041 * 21 20 19 28 28 H 0.97000 * 120.00339 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.12397 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.88070 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.75099 * 180.29707 * 12 11 10 32 32 H 1.08001 * 119.87701 * 179.72172 * 13 12 11 33 33 H 1.08998 * 109.47136 * 24.99987 * 15 14 13 34 34 H 1.08995 * 109.47006 * 145.00438 * 15 14 13 35 35 H 0.96998 * 120.00101 * 354.97775 * 18 16 15 36 36 H 1.08006 * 120.47676 * 0.02562 * 20 19 18 37 37 H 1.08005 * 119.56468 * 180.02562 * 23 22 21 38 38 H 1.09005 * 110.29898 * 136.03478 * 25 22 21 39 39 H 1.08998 * 110.29775 * 258.07763 * 25 22 21 40 40 H 1.08997 * 110.80422 * 92.01898 * 26 25 22 41 41 H 1.09005 * 110.80568 * 215.33159 * 26 25 22 42 42 H 1.09004 * 110.30620 * 44.29447 * 27 21 20 43 43 H 1.09002 * 110.38771 * 282.17979 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0757 -1.2189 -0.1625 9 6 1.3170 -2.4273 0.2109 10 6 0.1533 -2.4528 1.0020 11 6 -0.5107 -3.6412 1.2014 12 6 -0.0405 -4.8099 0.6219 13 6 1.1078 -4.7976 -0.1543 14 6 1.7882 -3.6202 -0.3674 15 6 3.0326 -3.6089 -1.2173 16 6 4.2464 -3.7302 -0.3324 17 8 4.1139 -3.8168 0.8701 18 7 5.4791 -3.7414 -0.8771 19 6 6.6046 -3.7478 -0.0544 20 6 7.8716 -3.6464 -0.6186 21 6 8.9784 -3.6495 0.2109 22 6 8.7841 -3.7646 1.5795 23 6 7.4964 -3.8668 2.0707 24 7 6.4588 -3.8565 1.2565 25 6 10.1213 -3.7522 2.2853 26 6 11.1188 -3.1829 1.2536 27 6 10.4553 -3.5519 -0.0910 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2171 -1.5430 1.4507 30 1 -1.4037 -3.6633 1.8084 31 1 -0.5708 -5.7374 0.7798 32 1 1.4675 -5.7145 -0.5972 33 1 3.0050 -4.4474 -1.9131 34 1 3.0823 -2.6744 -1.7761 35 1 5.5832 -3.7449 -1.8414 36 1 7.9895 -3.5623 -1.6889 37 1 7.3377 -3.9564 3.1352 38 1 10.0788 -3.1094 3.1646 39 1 10.4073 -4.7644 2.5712 40 1 11.2081 -2.1015 1.3573 41 1 12.0932 -3.6615 1.3521 42 1 10.6396 -2.7724 -0.8303 43 1 10.8337 -4.5093 -0.4493 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818982551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:11 Heat of formation + Delta-G solvation = 4.484129 kcal Electronic energy + Delta-G solvation = -25986.004153 eV Core-core repulsion = 22380.705836 eV Total energy + Delta-G solvation = -3605.298316 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.97109 -40.61412 -39.20014 -37.54782 -35.49324 -35.45142 -33.46057 -32.45828 -31.35212 -30.39693 -28.99945 -27.84394 -26.81560 -24.61993 -23.42579 -22.81192 -21.90214 -21.52311 -20.88344 -19.12301 -18.59693 -18.10774 -17.28812 -16.72522 -16.65231 -16.42036 -16.23110 -15.88601 -15.61604 -15.29880 -15.28226 -14.72835 -14.45749 -14.35789 -13.91280 -13.63839 -13.56994 -13.38673 -12.97513 -12.90079 -12.81064 -12.70696 -12.50340 -12.41802 -12.13318 -12.03049 -12.01636 -11.42084 -11.34538 -11.23023 -11.08778 -11.08206 -10.31093 -10.01242 -9.20813 -9.15977 -9.07805 -8.56662 -6.33456 0.12309 0.36975 0.95975 1.11033 1.32788 1.46100 1.48312 1.82683 2.02922 2.18652 2.78878 2.91113 3.38442 3.54217 3.62798 3.80615 4.03682 4.09594 4.14627 4.23019 4.33085 4.38876 4.47283 4.58777 4.59667 4.67865 4.72075 4.78006 4.85890 4.93735 5.00272 5.05846 5.08701 5.19228 5.22567 5.32756 5.35956 5.38270 5.44724 5.53269 5.76819 5.87762 6.01794 6.15364 6.19230 6.32932 6.40953 6.72752 6.98627 7.09007 7.12334 7.48744 8.39518 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.003510 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.002755 B = 7975.600365 C = 9160.496459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.035 3.965 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.257 1.257 6 H -0.269 1.269 7 C -0.483 4.483 8 H 0.064 0.936 9 C 0.095 3.905 10 C -0.186 4.186 11 C -0.119 4.119 12 C -0.236 4.236 13 C -0.093 4.093 14 C -0.184 4.184 15 C -0.065 4.065 16 C 0.504 3.496 17 O -0.509 6.509 18 N -0.656 5.656 19 C 0.336 3.664 20 C -0.192 4.192 21 C -0.039 4.039 22 C -0.189 4.189 23 C 0.116 3.884 24 N -0.525 5.525 25 C -0.071 4.071 26 C -0.115 4.115 27 C -0.077 4.077 28 H 0.285 0.715 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.433 0.567 36 H 0.166 0.834 37 H 0.155 0.845 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.940 -5.168 -4.632 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.178 4.178 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.181 1.181 6 H -0.194 1.194 7 C -0.513 4.513 8 H 0.083 0.917 9 C 0.093 3.907 10 C -0.206 4.206 11 C -0.138 4.138 12 C -0.255 4.255 13 C -0.111 4.111 14 C -0.186 4.186 15 C -0.105 4.105 16 C 0.291 3.709 17 O -0.379 6.379 18 N -0.305 5.305 19 C 0.105 3.895 20 C -0.215 4.215 21 C -0.047 4.047 22 C -0.193 4.193 23 C -0.041 4.041 24 N -0.239 5.239 25 C -0.109 4.109 26 C -0.152 4.152 27 C -0.114 4.114 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.273 0.727 36 H 0.183 0.817 37 H 0.172 0.828 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 20.660 -5.123 -3.477 21.568 hybrid contribution 0.184 0.910 -0.338 0.988 sum 20.845 -4.213 -3.815 21.606 Atomic orbital electron populations 1.69860 1.08556 1.29913 1.37693 1.26609 0.95528 1.03957 0.91743 0.85302 0.78904 0.77217 0.79124 1.19284 1.18105 1.19438 1.19579 0.94978 0.91406 1.45336 0.91735 1.17743 0.91691 0.92791 0.88459 1.21342 0.99828 0.96718 1.02715 1.20975 0.99202 0.93483 1.00098 1.20759 1.00592 0.97388 1.06807 1.20762 0.95440 0.96422 0.98503 1.19562 0.99460 0.94114 1.05459 1.20309 0.88386 1.05105 0.96681 1.21573 0.84569 0.75140 0.89589 1.90769 1.85814 1.44309 1.17037 1.43661 1.03426 1.72835 1.10598 1.18811 0.87116 0.95200 0.88363 1.21146 0.89257 1.08561 1.02526 1.21119 0.97096 0.93200 0.93264 1.21843 0.96345 1.04412 0.96706 1.22321 0.87046 0.95094 0.99620 1.67642 1.35402 1.16744 1.04158 1.21009 0.88560 1.02732 0.98596 1.22367 0.98764 1.01734 0.92353 1.21153 0.86712 1.04012 0.99528 0.90480 0.88458 0.87567 0.86507 0.86375 0.86184 0.87989 0.72695 0.81685 0.82791 0.90160 0.89025 0.90750 0.87815 0.88775 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.39 10.86 21.83 0.24 -45.15 16 2 C 0.03 1.84 5.26 85.26 0.45 2.29 16 3 Si 0.97 40.80 29.57 68.60 2.03 42.83 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.48 -27.04 8.06 23.46 0.19 -26.86 16 8 H 0.06 3.60 6.79 -2.91 -0.02 3.58 16 9 C 0.10 5.38 5.54 -21.29 -0.12 5.26 16 10 C -0.19 -10.62 8.65 22.73 0.20 -10.43 16 11 C -0.12 -6.03 10.02 22.22 0.22 -5.81 16 12 C -0.24 -11.00 10.05 22.46 0.23 -10.78 16 13 C -0.09 -4.28 9.66 22.22 0.21 -4.07 16 14 C -0.18 -9.06 4.43 -19.40 -0.09 -9.15 16 15 C -0.07 -2.53 5.19 29.10 0.15 -2.38 16 16 C 0.50 20.77 7.40 87.66 0.65 21.42 16 17 O -0.51 -26.66 14.30 -3.04 -0.04 -26.70 16 18 N -0.66 -20.58 5.39 -308.43 -1.66 -22.25 16 19 C 0.34 11.09 7.42 132.92 0.99 12.07 16 20 C -0.19 -4.52 9.95 22.49 0.22 -4.29 16 21 C -0.04 -0.81 6.20 -19.62 -0.12 -0.93 16 22 C -0.19 -4.44 6.18 -19.60 -0.12 -4.57 16 23 C 0.12 3.65 11.18 84.67 0.95 4.60 16 24 N -0.52 -20.63 7.89 -192.94 -1.52 -22.16 16 25 C -0.07 -1.04 6.76 30.48 0.21 -0.84 16 26 C -0.11 -1.16 7.08 31.54 0.22 -0.93 16 27 C -0.08 -0.91 6.76 30.44 0.21 -0.70 16 28 H 0.28 14.06 8.30 -92.71 -0.77 13.29 16 29 H 0.10 5.81 6.27 -2.91 -0.02 5.79 16 30 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 31 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 32 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 33 H 0.12 3.56 8.05 -2.39 -0.02 3.54 16 34 H 0.10 3.90 7.12 -2.39 -0.02 3.88 16 35 H 0.43 9.06 8.70 -92.71 -0.81 8.25 16 36 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.15 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -79.35 359.52 3.92 -75.44 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.24 Total: 34.08 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 4.64 Total: -36.08 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -2.95 Total: -89.56 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.04 Total: -26.70 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -79.35 3.92 -75.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818982551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.920 kcal (2) G-P(sol) polarization free energy of solvation -79.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds