Wall clock time and date at job start Tue Mar 31 2020 13:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76199 * 102.99825 * 2 1 4 4 C 1.38977 * 120.07900 * 180.02562 * 3 2 1 5 5 C 1.38090 * 119.91609 * 180.02562 * 4 3 2 6 6 C 1.38300 * 120.07950 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.91420 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00240 * 7 6 5 9 9 C 1.52996 * 109.47210 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47094 * 179.97438 * 9 8 7 11 11 O 1.20820 * 120.00136 * 0.02562 * 10 9 8 12 12 O 1.34232 * 119.99880 * 179.97438 * 10 9 8 13 13 C 1.45193 * 116.99942 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47226 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47143 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47061 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00172 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00075 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00012 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00049 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47249 * 90.00339 * 20 18 16 22 22 H 1.48498 * 109.47239 * 210.00523 * 20 18 16 23 23 H 1.48502 * 109.47194 * 330.00449 * 20 18 16 24 24 C 1.38296 * 120.16508 * 0.27934 * 6 5 4 25 25 C 1.38085 * 120.07938 * 359.44518 * 24 6 5 26 26 H 1.09003 * 109.46816 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47156 * 300.00061 * 1 2 3 28 28 H 1.08998 * 109.47366 * 60.00299 * 1 2 3 29 29 H 1.07998 * 120.04224 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.95775 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.46646 * 209.99654 * 7 6 5 32 32 H 1.09000 * 109.47248 * 330.00371 * 7 6 5 33 33 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 34 34 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 35 35 H 1.08997 * 109.47037 * 300.00424 * 9 8 7 36 36 H 1.09000 * 109.46839 * 60.00324 * 9 8 7 37 37 H 1.09003 * 109.47107 * 300.00471 * 13 12 10 38 38 H 1.08999 * 109.47324 * 60.00201 * 13 12 10 39 39 H 1.08999 * 109.46763 * 300.00106 * 14 13 12 40 40 H 1.08995 * 109.47128 * 60.00234 * 14 13 12 41 41 H 1.08999 * 109.47327 * 299.99699 * 15 14 13 42 42 H 1.08999 * 109.47415 * 59.99938 * 15 14 13 43 43 H 0.97001 * 119.99859 * 179.97438 * 19 18 16 44 44 H 1.07998 * 119.96112 * 179.72340 * 24 6 5 45 45 H 1.07998 * 120.04126 * 180.27363 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5388 2.1250 -0.0005 5 6 3.8455 3.4714 0.0000 6 6 2.8327 4.4131 0.0005 7 6 3.1717 5.8816 0.0005 8 6 3.2858 6.3787 -1.4420 9 6 3.6293 7.8695 -1.4420 10 6 3.7422 8.3590 -2.8628 11 8 3.5656 7.5940 -3.7812 12 8 4.0381 9.6451 -3.1081 13 6 4.1302 10.0464 -4.5005 14 6 4.4734 11.5352 -4.5806 15 6 4.5697 11.9582 -6.0478 16 6 4.9072 13.4248 -6.1267 17 1 5.0400 13.9978 -5.2209 18 6 5.0473 14.0349 -7.3552 19 7 4.8860 13.3370 -8.4582 20 14 5.4662 15.8526 -7.4529 21 1 6.9415 16.0198 -7.4795 22 1 4.8803 16.4298 -8.6893 23 1 4.9099 16.5533 -6.2677 24 6 1.5096 4.0107 0.0064 25 6 1.1952 2.6661 0.0001 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 4.3302 1.3902 -0.0005 30 1 4.8777 3.7894 0.0000 31 1 2.3864 6.4357 0.5147 32 1 4.1209 6.0353 0.5139 33 1 4.0709 5.8245 -1.9562 34 1 2.3366 6.2248 -1.9554 35 1 2.8439 8.4234 -0.9278 36 1 4.5783 8.0237 -0.9285 37 1 4.9100 9.4669 -4.9948 38 1 3.1754 9.8662 -4.9944 39 1 3.6938 12.1149 -4.0862 40 1 5.4283 11.7151 -4.0868 41 1 5.3491 11.3786 -6.5426 42 1 3.6146 11.7784 -6.5412 43 1 4.9842 13.7663 -9.3225 44 1 0.7213 4.7488 0.0113 45 1 0.1617 2.3525 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829621655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:26 Heat of formation + Delta-G solvation = -99.598874 kcal Electronic energy + Delta-G solvation = -22617.742913 eV Core-core repulsion = 19111.082419 eV Total energy + Delta-G solvation = -3506.660494 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.27732 -39.64082 -36.68654 -35.22572 -33.98583 -31.99797 -31.63943 -31.46154 -29.41308 -27.94768 -26.75969 -23.88173 -23.04281 -22.80008 -21.32652 -20.51090 -20.18925 -18.17489 -17.41665 -16.69119 -16.61244 -16.20129 -15.95236 -15.61546 -15.11147 -14.87579 -14.48492 -14.39604 -14.31110 -13.88948 -13.78007 -13.61834 -13.18737 -12.91696 -12.63698 -12.46759 -12.22444 -11.97082 -11.93684 -11.80497 -11.60074 -11.40707 -10.98457 -10.96484 -10.67892 -10.66273 -10.63144 -10.37271 -10.32811 -9.91427 -9.72122 -9.49765 -9.36844 -9.16595 -8.39095 -7.78903 -6.03861 -4.06990 0.78818 0.98898 1.07971 1.94839 2.37011 2.90135 3.29603 3.30710 3.36908 3.40426 4.33412 4.36660 4.42955 4.52668 4.53945 4.54887 4.69894 4.71343 4.88817 4.97978 5.00860 5.11554 5.20961 5.25553 5.32084 5.36148 5.36449 5.49809 5.57995 5.60592 5.64299 5.78964 5.86529 5.93430 6.01956 6.02224 6.25268 6.51414 6.53048 6.53954 6.86432 6.98887 7.59916 7.70948 7.94011 7.96388 8.35634 8.99279 9.57326 11.07549 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.038157 B = 0.001408 C = 0.001389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.634605 B =19875.368173 C =20157.653058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.125 6.125 3 C -0.089 4.089 4 C -0.097 4.097 5 C -0.097 4.097 6 C -0.081 4.081 7 C -0.081 4.081 8 C -0.104 4.104 9 C -0.115 4.115 10 C 0.454 3.546 11 O -0.514 6.514 12 O -0.360 6.360 13 C 0.068 3.932 14 C -0.109 4.109 15 C 0.023 3.977 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.096 4.096 25 C -0.131 4.131 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.126 0.874 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.584 -25.335 22.537 34.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.117 5.883 3 C -0.202 4.202 4 C -0.121 4.121 5 C -0.116 4.116 6 C -0.084 4.084 7 C -0.118 4.118 8 C -0.141 4.141 9 C -0.152 4.152 10 C 0.297 3.703 11 O -0.402 6.402 12 O -0.277 6.277 13 C -0.005 4.005 14 C -0.147 4.147 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.116 4.116 25 C -0.155 4.155 26 H 0.126 0.874 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.144 0.856 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.000 -26.589 22.031 35.232 hybrid contribution -0.657 2.011 -0.416 2.156 sum -7.657 -24.577 21.614 33.613 Atomic orbital electron populations 1.23669 0.94647 1.07148 1.05746 1.85511 1.06595 1.03451 1.92712 1.21706 0.96780 0.96276 1.05417 1.20752 0.94206 0.96192 1.00907 1.21023 0.99369 0.92039 0.99217 1.19907 0.93170 0.95672 0.99614 1.20631 1.02845 0.91256 0.97061 1.21413 1.03759 0.92999 0.95952 1.21400 1.05398 0.97279 0.91160 1.23655 0.73128 0.80880 0.92628 1.90663 1.46046 1.56403 1.47121 1.86497 1.80192 1.27762 1.33211 1.23486 1.01884 0.98259 0.76879 1.21760 1.01283 0.89732 1.01883 1.19056 0.97624 0.96502 0.88201 1.21178 1.48029 0.94463 0.92370 0.92421 1.25031 0.95343 0.98303 0.95773 1.69970 1.49728 1.36136 0.97502 0.86542 0.78561 0.85067 0.77532 1.20610 1.21187 1.19812 1.20968 0.96156 0.95232 0.99249 1.21140 0.98124 0.93183 1.03013 0.87377 0.89722 0.89639 0.85492 0.85304 0.90508 0.90427 0.90692 0.90775 0.87741 0.87715 0.91580 0.91588 0.92171 0.92161 0.96238 0.96236 0.92897 0.85575 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.15 101.05 0.92 0.28 16 2 S -0.12 -0.94 22.56 -107.50 -2.43 -3.37 16 3 C -0.09 -0.77 6.11 -39.03 -0.24 -1.01 16 4 C -0.10 -0.82 9.79 -39.36 -0.39 -1.20 16 5 C -0.10 -0.76 9.69 -39.61 -0.38 -1.15 16 6 C -0.08 -0.63 5.14 -104.57 -0.54 -1.17 16 7 C -0.08 -0.52 5.34 -27.88 -0.15 -0.67 16 8 C -0.10 -0.90 4.49 -26.73 -0.12 -1.02 16 9 C -0.11 -1.04 5.81 -27.88 -0.16 -1.20 16 10 C 0.45 6.61 7.96 36.01 0.29 6.90 16 11 O -0.51 -9.07 15.73 -18.75 -0.29 -9.37 16 12 O -0.36 -5.95 10.22 -39.26 -0.40 -6.35 16 13 C 0.07 1.27 5.47 37.16 0.20 1.47 16 14 C -0.11 -2.28 5.53 -26.73 -0.15 -2.42 16 15 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 16 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 20 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 24 C -0.10 -0.74 9.69 -39.62 -0.38 -1.13 16 25 C -0.13 -1.03 9.36 -39.36 -0.37 -1.40 16 26 H 0.11 0.33 8.14 -51.92 -0.42 -0.09 16 27 H 0.08 0.32 7.75 -51.93 -0.40 -0.08 16 28 H 0.08 0.36 7.75 -51.93 -0.40 -0.05 16 29 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 30 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.08 0.40 8.08 -51.93 -0.42 -0.01 16 32 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.07 0.73 8.10 -51.92 -0.42 0.31 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 38 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.12 0.74 5.88 -52.49 -0.31 0.43 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -32.97 392.96 -10.90 -43.88 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -7.41 Total: -4.32 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -2.01 Total: -16.80 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.70 Total: -15.71 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.43 Total: -3.37 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.97 -10.90 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829621655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.723 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds