Wall clock time and date at job start Tue Mar 31 2020 13:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76199 * 102.99825 * 2 1 4 4 C 1.38977 * 120.07900 * 180.02562 * 3 2 1 5 5 C 1.38090 * 119.91609 * 180.02562 * 4 3 2 6 6 C 1.38300 * 120.07950 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.91420 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00240 * 7 6 5 9 9 C 1.52996 * 109.47210 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47094 * 179.97438 * 9 8 7 11 11 O 1.20820 * 120.00136 * 0.02562 * 10 9 8 12 12 O 1.34232 * 119.99880 * 179.97438 * 10 9 8 13 13 C 1.45193 * 116.99942 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47226 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47143 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47061 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00172 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00075 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00012 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00049 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47249 * 90.00339 * 20 18 16 22 22 H 1.48498 * 109.47239 * 210.00523 * 20 18 16 23 23 H 1.48502 * 109.47194 * 330.00449 * 20 18 16 24 24 C 1.38296 * 120.16508 * 0.27934 * 6 5 4 25 25 C 1.38085 * 120.07938 * 359.44518 * 24 6 5 26 26 H 1.09003 * 109.46816 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47156 * 300.00061 * 1 2 3 28 28 H 1.08998 * 109.47366 * 60.00299 * 1 2 3 29 29 H 1.07998 * 120.04224 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.95775 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.46646 * 209.99654 * 7 6 5 32 32 H 1.09000 * 109.47248 * 330.00371 * 7 6 5 33 33 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 34 34 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 35 35 H 1.08997 * 109.47037 * 300.00424 * 9 8 7 36 36 H 1.09000 * 109.46839 * 60.00324 * 9 8 7 37 37 H 1.09003 * 109.47107 * 300.00471 * 13 12 10 38 38 H 1.08999 * 109.47324 * 60.00201 * 13 12 10 39 39 H 1.08999 * 109.46763 * 300.00106 * 14 13 12 40 40 H 1.08995 * 109.47128 * 60.00234 * 14 13 12 41 41 H 1.08999 * 109.47327 * 299.99699 * 15 14 13 42 42 H 1.08999 * 109.47415 * 59.99938 * 15 14 13 43 43 H 0.97001 * 119.99859 * 179.97438 * 19 18 16 44 44 H 1.07998 * 119.96112 * 179.72340 * 24 6 5 45 45 H 1.07998 * 120.04126 * 180.27363 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5388 2.1250 -0.0005 5 6 3.8455 3.4714 0.0000 6 6 2.8327 4.4131 0.0005 7 6 3.1717 5.8816 0.0005 8 6 3.2858 6.3787 -1.4420 9 6 3.6293 7.8695 -1.4420 10 6 3.7422 8.3590 -2.8628 11 8 3.5656 7.5940 -3.7812 12 8 4.0381 9.6451 -3.1081 13 6 4.1302 10.0464 -4.5005 14 6 4.4734 11.5352 -4.5806 15 6 4.5697 11.9582 -6.0478 16 6 4.9072 13.4248 -6.1267 17 1 5.0400 13.9978 -5.2209 18 6 5.0473 14.0349 -7.3552 19 7 4.8860 13.3370 -8.4582 20 14 5.4662 15.8526 -7.4529 21 1 6.9415 16.0198 -7.4795 22 1 4.8803 16.4298 -8.6893 23 1 4.9099 16.5533 -6.2677 24 6 1.5096 4.0107 0.0064 25 6 1.1952 2.6661 0.0001 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 4.3302 1.3902 -0.0005 30 1 4.8777 3.7894 0.0000 31 1 2.3864 6.4357 0.5147 32 1 4.1209 6.0353 0.5139 33 1 4.0709 5.8245 -1.9562 34 1 2.3366 6.2248 -1.9554 35 1 2.8439 8.4234 -0.9278 36 1 4.5783 8.0237 -0.9285 37 1 4.9100 9.4669 -4.9948 38 1 3.1754 9.8662 -4.9944 39 1 3.6938 12.1149 -4.0862 40 1 5.4283 11.7151 -4.0868 41 1 5.3491 11.3786 -6.5426 42 1 3.6146 11.7784 -6.5412 43 1 4.9842 13.7663 -9.3225 44 1 0.7213 4.7488 0.0113 45 1 0.1617 2.3525 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829621655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:26 Heat of formation + Delta-G solvation = -114.735634 kcal Electronic energy + Delta-G solvation = -22618.399292 eV Core-core repulsion = 19111.082419 eV Total energy + Delta-G solvation = -3507.316873 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.49743 -40.22515 -37.98050 -35.97467 -35.91960 -33.70580 -32.50324 -32.09118 -29.82956 -29.24909 -28.04187 -25.37732 -23.96820 -23.59866 -22.16895 -21.99420 -21.36730 -18.81098 -18.69309 -18.37696 -17.86618 -17.31564 -16.69085 -16.51775 -16.47393 -15.97034 -15.61736 -15.06152 -14.92410 -14.79695 -14.60674 -14.37606 -14.19331 -13.95432 -13.83068 -13.76411 -13.41518 -13.15703 -12.90134 -12.79479 -12.61094 -12.50521 -12.36423 -12.19613 -12.06816 -11.97997 -11.77638 -11.57711 -11.39784 -11.38902 -11.22531 -11.17575 -10.57628 -10.47731 -9.94524 -8.36629 -8.22000 -6.33857 0.20243 0.41198 0.57774 1.21678 1.41738 1.43311 1.46501 1.54478 1.73163 2.41600 2.69969 3.11929 3.66287 3.75464 3.83462 3.98846 3.99327 4.06867 4.09454 4.22100 4.23569 4.27530 4.39439 4.43903 4.47196 4.50815 4.67007 4.68517 4.78321 4.79395 4.83138 4.92895 4.97670 5.02781 5.07838 5.18612 5.29423 5.36001 5.38301 5.45120 5.57946 5.62928 5.69277 5.79576 5.97357 6.18643 6.74537 6.82463 7.35894 8.90185 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.038157 B = 0.001408 C = 0.001389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.634605 B =19875.368173 C =20157.653058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.161 6.161 3 C -0.102 4.102 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.091 4.091 7 C -0.071 4.071 8 C -0.098 4.098 9 C -0.104 4.104 10 C 0.449 3.551 11 O -0.550 6.550 12 O -0.359 6.359 13 C 0.077 3.923 14 C -0.094 4.094 15 C 0.024 3.976 16 C -0.544 4.544 17 H 0.066 0.934 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.970 3.030 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.261 1.261 24 C -0.105 4.105 25 C -0.140 4.140 26 H 0.123 0.877 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.143 0.857 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.067 0.933 41 H -0.004 1.004 42 H -0.004 1.004 43 H 0.264 0.736 44 H 0.143 0.857 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.946 -24.301 24.736 35.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.081 5.919 3 C -0.214 4.214 4 C -0.138 4.138 5 C -0.125 4.125 6 C -0.093 4.093 7 C -0.108 4.108 8 C -0.136 4.136 9 C -0.141 4.141 10 C 0.295 3.705 11 O -0.441 6.441 12 O -0.276 6.276 13 C 0.004 3.996 14 C -0.131 4.131 15 C -0.013 4.013 16 C -0.582 4.582 17 H 0.084 0.916 18 C -0.199 4.199 19 N -0.574 5.574 20 Si 0.794 3.206 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.185 1.185 24 C -0.125 4.125 25 C -0.164 4.164 26 H 0.142 0.858 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.148 0.852 30 H 0.160 0.840 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.014 0.986 42 H 0.014 0.986 43 H 0.073 0.927 44 H 0.160 0.840 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.362 -25.564 24.260 36.004 hybrid contribution -0.586 1.583 -1.097 2.013 sum -7.948 -23.982 23.163 34.276 Atomic orbital electron populations 1.23745 0.91689 1.08408 1.06405 1.85575 1.09972 1.03576 1.92794 1.21876 0.97157 0.96680 1.05730 1.20961 0.94529 0.96794 1.01498 1.21270 1.00305 0.91935 0.98965 1.20142 0.93220 0.96502 0.99476 1.20594 1.04468 0.90282 0.95494 1.21344 1.02265 0.92695 0.97289 1.21593 1.07892 0.97274 0.87317 1.24865 0.71482 0.79573 0.94598 1.90657 1.47698 1.56935 1.48812 1.86493 1.80606 1.29316 1.31190 1.23075 1.01257 0.96821 0.78487 1.21451 1.02002 0.91283 0.98378 1.18948 0.95404 0.95711 0.91229 1.21637 1.47996 0.95657 0.92934 0.91568 1.26021 0.95008 1.03541 0.95320 1.70108 1.50717 1.38384 0.98178 0.85375 0.78583 0.78758 0.77902 1.19716 1.20839 1.18468 1.21263 0.96758 0.95579 0.98857 1.21398 0.98803 0.93325 1.02856 0.85811 0.88761 0.89208 0.85206 0.83950 0.88656 0.88726 0.92441 0.92390 0.84839 0.84892 0.92275 0.92245 0.91395 0.91391 0.98606 0.98578 0.92705 0.83958 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 9.15 113.37 1.04 -0.01 16 2 S -0.16 -2.43 22.56 -56.49 -1.27 -3.70 16 3 C -0.10 -1.75 6.11 22.63 0.14 -1.61 16 4 C -0.11 -1.94 9.79 22.41 0.22 -1.72 16 5 C -0.11 -1.58 9.69 22.25 0.22 -1.36 16 6 C -0.09 -1.28 5.14 -19.83 -0.10 -1.38 16 7 C -0.07 -0.71 5.34 29.85 0.16 -0.55 16 8 C -0.10 -1.51 4.49 30.59 0.14 -1.37 16 9 C -0.10 -1.56 5.81 29.85 0.17 -1.39 16 10 C 0.45 12.49 7.96 71.24 0.57 13.06 16 11 O -0.55 -19.46 15.73 21.98 0.35 -19.12 16 12 O -0.36 -11.38 10.22 -51.44 -0.53 -11.91 16 13 C 0.08 2.89 5.47 71.98 0.39 3.28 16 14 C -0.09 -3.88 5.53 30.59 0.17 -3.72 16 15 C 0.02 1.29 4.97 29.85 0.15 1.44 16 16 C -0.54 -30.86 9.11 25.60 0.23 -30.63 16 17 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 18 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 19 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 20 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 24 C -0.11 -1.48 9.69 22.25 0.22 -1.26 16 25 C -0.14 -2.09 9.36 22.41 0.21 -1.88 16 26 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.09 0.57 7.75 -2.39 -0.02 0.55 16 28 H 0.09 0.64 7.75 -2.39 -0.02 0.62 16 29 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.09 0.64 8.08 -2.39 -0.02 0.62 16 32 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 33 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 34 H 0.06 1.08 8.10 -2.38 -0.02 1.06 16 35 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 38 H 0.06 2.28 8.13 -2.39 -0.02 2.26 16 39 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 45 H 0.14 1.49 5.88 -2.91 -0.02 1.47 16 Total: -1.00 -72.50 392.96 6.19 -66.32 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.95 Total: 7.89 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 4.38 Total: -28.70 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.28 Total: -56.71 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.18 Total: -31.02 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -1.27 Total: -3.70 kcal Total: -72.50 6.19 -66.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829621655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.420 kcal (2) G-P(sol) polarization free energy of solvation -72.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds