Wall clock time and date at job start Tue Mar 31 2020 12:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 C 1.34777 * 126.58402 * 124.71255 * 4 3 2 6 6 C 1.36669 * 106.83504 * 179.88332 * 5 4 3 7 7 C 1.47384 * 125.78481 * 180.14448 * 6 5 4 8 8 O 1.21517 * 119.99697 * 0.30207 * 7 6 5 9 9 O 1.34746 * 120.00274 * 180.30382 * 7 6 5 10 10 C 1.45202 * 116.99976 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46918 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00320 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99730 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00115 * 359.97438 * 13 11 10 15 15 C 1.52994 * 109.47045 * 90.00187 * 14 13 11 16 16 C 1.46507 * 119.99818 * 179.97438 * 13 11 10 17 17 C 1.50703 * 109.46820 * 89.99651 * 16 13 11 18 18 H 1.07991 * 120.00591 * 0.02562 * 17 16 13 19 19 C 1.37884 * 119.99487 * 179.97438 * 17 16 13 20 20 N 1.31514 * 120.00009 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99755 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47208 * 60.00464 * 21 19 17 23 23 H 1.48498 * 109.46961 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47482 * 300.00460 * 21 19 17 25 25 N 1.34451 * 108.43728 * 0.38291 * 6 5 4 26 26 N 1.28757 * 109.50928 * 359.76029 * 25 6 5 27 27 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 28 28 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 29 29 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 30 30 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 31 31 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 32 32 H 1.07996 * 126.58668 * 0.02562 * 5 4 3 33 33 H 1.09000 * 109.46949 * 299.99772 * 10 9 7 34 34 H 1.09001 * 109.47411 * 60.00202 * 10 9 7 35 35 H 1.08995 * 109.47134 * 210.00295 * 14 13 11 36 36 H 1.09000 * 109.47255 * 330.00242 * 14 13 11 37 37 H 1.09002 * 109.47248 * 179.97438 * 15 14 13 38 38 H 1.08995 * 109.47242 * 300.00041 * 15 14 13 39 39 H 1.09004 * 109.47324 * 60.00365 * 15 14 13 40 40 H 1.08994 * 109.47091 * 209.99597 * 16 13 11 41 41 H 1.09000 * 109.47154 * 330.00050 * 16 13 11 42 42 H 0.96997 * 119.99761 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 6 4.3189 1.5470 1.0821 6 6 4.7802 1.4919 2.3675 7 6 6.1811 1.6714 2.7888 8 8 7.0408 1.8957 1.9598 9 8 6.5085 1.5869 4.0931 10 6 7.9070 1.7750 4.4353 11 6 8.0811 1.6457 5.9266 12 8 7.1210 1.4179 6.6317 13 7 9.3037 1.7842 6.4769 14 6 10.4633 2.0598 5.6252 15 6 10.6396 3.5724 5.4776 16 6 9.4728 1.6590 7.9267 17 6 9.7548 0.2207 8.2772 18 1 9.8035 -0.5255 7.4980 19 6 9.9515 -0.1425 9.5927 20 7 9.8926 0.7663 10.5416 21 14 10.3003 -1.9254 10.0273 22 1 11.5420 -2.3678 9.3435 23 1 10.4718 -2.0522 11.4969 24 1 9.1638 -2.7737 9.5870 25 7 3.7404 1.2408 3.1820 26 7 2.6623 1.1416 2.4850 27 1 -0.5400 0.9353 -0.0045 28 1 -0.5400 -0.9353 0.0045 29 1 1.8500 -0.9353 0.0046 30 1 2.6252 1.4004 -0.9293 31 1 1.3582 2.1318 0.0846 32 1 4.9069 1.7284 0.1946 33 1 8.5090 1.0180 3.9326 34 1 8.2290 2.7663 4.1161 35 1 11.3573 1.6325 6.0792 36 1 10.3065 1.6147 4.6426 37 1 11.5027 3.7776 4.8443 38 1 9.7456 3.9998 5.0236 39 1 10.7964 4.0176 6.4601 40 1 10.3066 2.2820 8.2504 41 1 8.5609 1.9831 8.4282 42 1 10.0306 0.5107 11.4670 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830131439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:21 Heat of formation + Delta-G solvation = -16.748461 kcal Electronic energy + Delta-G solvation = -26104.691943 eV Core-core repulsion = 22087.623649 eV Total energy + Delta-G solvation = -4017.068294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.36275 -41.56638 -40.45732 -37.63834 -36.97826 -36.95535 -34.92862 -33.84697 -32.30622 -31.69839 -30.60383 -28.57431 -28.00222 -25.49675 -24.68308 -24.03483 -23.44047 -22.11260 -21.03792 -20.28277 -19.44485 -18.63583 -18.29519 -17.95577 -17.80209 -17.20172 -16.95370 -16.79364 -16.20169 -16.14873 -15.88571 -15.66107 -14.88916 -14.78954 -14.61284 -14.46236 -13.99832 -13.88204 -13.58029 -13.45654 -13.26499 -13.09594 -13.07381 -12.64748 -12.53248 -12.50910 -12.31952 -12.20379 -12.03827 -11.96536 -11.78283 -11.72040 -11.45458 -10.71719 -10.63745 -10.63353 -10.42409 -9.52661 -8.22421 -6.36806 -0.02472 0.33821 0.70173 1.20283 1.36660 1.41864 1.48594 1.60582 1.64162 1.84018 2.30422 2.43709 3.07223 3.09414 3.38698 3.45267 3.68136 3.79341 3.80514 3.91850 4.00316 4.11404 4.18688 4.36874 4.41445 4.54305 4.57389 4.62643 4.89934 4.93703 4.97667 5.05010 5.11189 5.21896 5.34371 5.39686 5.55632 5.56811 5.66270 5.81298 6.05233 6.38579 6.63652 6.72443 6.87647 7.23452 7.38250 8.84870 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017339 B = 0.002425 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.436049 B =11542.369593 C =12629.077152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.200 4.200 3 C 0.141 3.859 4 N -0.345 5.345 5 C 0.137 3.863 6 C -0.120 4.120 7 C 0.560 3.440 8 O -0.508 6.508 9 O -0.342 6.342 10 C 0.062 3.938 11 C 0.496 3.504 12 O -0.579 6.579 13 N -0.595 5.595 14 C 0.093 3.907 15 C -0.163 4.163 16 C 0.263 3.737 17 C -0.545 4.545 18 H 0.055 0.945 19 C 0.007 3.993 20 N -0.928 5.928 21 Si 0.968 3.032 22 H -0.257 1.257 23 H -0.278 1.278 24 H -0.280 1.280 25 N -0.223 5.223 26 N -0.082 5.082 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.159 0.841 31 H 0.121 0.879 32 H 0.259 0.741 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.031 0.969 41 H -0.003 1.003 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.630 3.687 -30.495 32.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.219 4.219 3 C 0.024 3.976 4 N -0.128 5.128 5 C -0.021 4.021 6 C -0.258 4.258 7 C 0.403 3.597 8 O -0.396 6.396 9 O -0.256 6.256 10 C -0.014 4.014 11 C 0.284 3.716 12 O -0.459 6.459 13 N -0.327 5.327 14 C -0.028 4.028 15 C -0.221 4.221 16 C 0.142 3.858 17 C -0.583 4.583 18 H 0.073 0.927 19 C -0.192 4.192 20 N -0.567 5.567 21 Si 0.792 3.208 22 H -0.182 1.182 23 H -0.203 1.203 24 H -0.206 1.206 25 N -0.097 5.097 26 N -0.063 5.063 27 H 0.135 0.865 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.176 0.824 31 H 0.139 0.861 32 H 0.275 0.725 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.015 0.985 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.965 3.406 -29.195 31.735 hybrid contribution 0.845 -0.707 0.426 1.182 sum -11.120 2.699 -28.769 30.961 Atomic orbital electron populations 1.24220 0.95464 1.03755 0.94682 1.22903 0.96764 0.97477 1.04760 1.21708 0.92415 0.98434 0.85058 1.51024 1.07118 1.45665 1.08990 1.23988 0.84842 0.93756 0.99505 1.20424 0.92099 1.21266 0.91991 1.19644 0.87261 0.72682 0.80135 1.90838 1.49517 1.46488 1.52747 1.86705 1.29729 1.81908 1.27261 1.22939 0.79827 1.06459 0.92166 1.20609 0.83313 0.77604 0.90106 1.90707 1.40885 1.49762 1.64552 1.48205 1.06993 1.68465 1.09062 1.21890 0.88375 0.97598 0.94981 1.22182 1.03249 0.94482 1.02231 1.18780 0.95463 0.96022 0.75545 1.21682 1.48927 0.94652 0.93069 0.92712 1.25872 0.94893 1.02426 0.96050 1.70043 1.50238 1.35548 1.00880 0.85464 0.78970 0.79011 0.77346 1.18179 1.20292 1.20607 1.74920 0.97237 1.09485 1.28098 1.82040 1.16608 1.22478 0.85170 0.86540 0.87125 0.87306 0.82354 0.86105 0.72490 0.85737 0.85283 0.90013 0.88074 0.88209 0.92323 0.93887 0.95093 0.98522 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 14.32 67.78 0.97 0.11 16 2 C -0.20 -1.47 9.72 25.64 0.25 -1.22 16 3 C 0.14 0.61 6.98 85.63 0.60 1.21 16 4 N -0.34 -5.03 3.68 -350.80 -1.29 -6.32 16 5 C 0.14 1.96 11.27 83.87 0.95 2.91 16 6 C -0.12 -3.15 7.02 40.78 0.29 -2.86 16 7 C 0.56 16.56 7.96 70.23 0.56 17.12 16 8 O -0.51 -13.82 16.65 19.78 0.33 -13.49 16 9 O -0.34 -12.61 9.76 -50.17 -0.49 -13.10 16 10 C 0.06 2.04 4.51 71.24 0.32 2.36 16 11 C 0.50 22.36 7.75 87.66 0.68 23.03 16 12 O -0.58 -33.22 16.08 15.77 0.25 -32.97 16 13 N -0.59 -25.94 2.46 -826.16 -2.03 -27.97 16 14 C 0.09 2.82 5.93 86.38 0.51 3.33 16 15 C -0.16 -4.01 10.24 71.98 0.74 -3.27 16 16 C 0.26 14.53 5.16 85.63 0.44 14.97 16 17 C -0.54 -32.13 9.39 25.60 0.24 -31.89 16 18 H 0.05 3.18 7.81 -2.92 -0.02 3.16 16 19 C 0.01 0.39 5.46 84.66 0.46 0.85 16 20 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 21 Si 0.97 46.01 29.54 68.60 2.03 48.04 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 24 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 25 N -0.22 -7.21 12.39 -50.03 -0.62 -7.83 16 26 N -0.08 -2.14 13.63 37.02 0.50 -1.63 16 27 H 0.12 0.38 7.84 -2.91 -0.02 0.35 16 28 H 0.11 0.60 8.06 -2.91 -0.02 0.58 16 29 H 0.11 1.00 8.06 -2.91 -0.02 0.98 16 30 H 0.16 -0.65 8.08 -2.39 -0.02 -0.67 16 31 H 0.12 0.20 7.79 -2.39 -0.02 0.18 16 32 H 0.26 0.83 8.06 -2.91 -0.02 0.80 16 33 H 0.12 3.36 7.40 -2.39 -0.02 3.34 16 34 H 0.13 3.34 7.18 -2.39 -0.02 3.32 16 35 H 0.08 2.57 8.07 -2.39 -0.02 2.56 16 36 H 0.10 2.34 6.44 -2.39 -0.02 2.32 16 37 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.35 7.22 -2.39 -0.02 1.33 16 39 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.03 1.71 8.07 -2.39 -0.02 1.69 16 41 H 0.00 -0.22 7.42 -2.39 -0.02 -0.23 16 42 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -90.66 376.59 7.00 -83.66 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: 1.03 Total: 1.92 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: 7.00 Total: 26.66 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -3.15 Total: -100.72 kcal Atomic # 8 Polarization: -59.65 SS G_CDS: 0.09 Total: -59.56 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -90.66 7.00 -83.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830131439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.911 kcal (2) G-P(sol) polarization free energy of solvation -90.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds