Wall clock time and date at job start Tue Mar 31 2020 13:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99954 * 2 1 4 4 H 1.48501 * 109.47248 * 239.99576 * 3 2 1 5 5 H 1.48503 * 109.47429 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47515 * 119.99617 * 3 2 1 7 7 C 1.37871 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00232 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00262 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47288 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47064 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46607 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00430 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99538 * 180.02562 * 13 12 11 16 16 C 1.46502 * 119.99793 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.47063 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.47288 * 180.02562 * 17 16 15 19 19 N 1.28333 * 124.90500 * 90.03776 * 18 17 16 20 20 C 1.33490 * 117.83473 * 179.97438 * 19 18 17 21 21 C 1.33869 * 113.18215 * 0.07307 * 20 19 18 22 22 S 1.70749 * 124.89958 * 269.99716 * 18 17 16 23 23 C 1.51713 * 110.89269 * 179.97438 * 21 20 19 24 24 C 1.54302 * 104.90746 * 342.75013 * 23 21 20 25 25 C 1.52615 * 137.15387 * 180.14367 * 20 19 18 26 26 H 0.97003 * 120.00131 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.46911 * 59.99301 * 9 7 2 28 28 H 1.09007 * 109.46762 * 299.99544 * 9 7 2 29 29 H 1.09003 * 109.47343 * 59.99633 * 10 9 7 30 30 H 1.08997 * 109.47099 * 299.99567 * 10 9 7 31 31 H 1.09003 * 109.46967 * 59.99737 * 11 10 9 32 32 H 1.08997 * 109.46982 * 299.99972 * 11 10 9 33 33 H 1.08998 * 109.46720 * 60.00134 * 12 11 10 34 34 H 1.08997 * 109.47467 * 300.00004 * 12 11 10 35 35 H 0.96998 * 120.00188 * 0.02562 * 15 13 12 36 36 H 1.09003 * 109.47075 * 60.00062 * 16 15 13 37 37 H 1.08997 * 109.47075 * 300.00174 * 16 15 13 38 38 H 1.09003 * 109.47343 * 59.99958 * 17 16 15 39 39 H 1.09007 * 109.47013 * 299.99919 * 17 16 15 40 40 H 1.09002 * 110.37205 * 101.64055 * 23 21 20 41 41 H 1.08999 * 110.36965 * 223.86420 * 23 21 20 42 42 H 1.09005 * 110.97220 * 144.35405 * 24 23 21 43 43 H 1.08995 * 110.97428 * 268.12496 * 24 23 21 44 44 H 1.08997 * 110.32202 * 316.27309 * 25 20 19 45 45 H 1.09008 * 110.31487 * 78.46849 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0005 13 6 1.7209 -7.4551 0.0005 14 8 0.5082 -7.4551 0.0005 15 7 2.3949 -8.6223 0.0005 16 6 1.6623 -9.8910 0.0011 17 6 2.6566 -11.0539 0.0016 18 6 1.9031 -12.3591 0.0016 19 7 1.5369 -12.9955 -1.0509 20 6 0.8749 -14.1430 -0.8867 21 6 0.6870 -14.4636 0.3994 22 16 1.4142 -13.2049 1.4019 23 6 -0.0690 -15.7728 0.5258 24 6 -0.7067 -15.9985 -0.8610 25 6 0.2591 -15.2172 -1.7789 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5570 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8720 -3.6043 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.8532 -5.0451 -0.8886 32 1 0.8539 -5.0446 0.8914 33 1 3.1018 -6.0921 0.8901 34 1 3.1006 -6.0923 -0.8899 35 1 3.3648 -8.6223 0.0009 36 1 1.0353 -9.9489 -0.8887 37 1 1.0360 -9.9485 0.8913 38 1 3.2833 -10.9958 0.8916 39 1 3.2832 -10.9966 -0.8885 40 1 0.6170 -16.5855 0.7648 41 1 -0.8418 -15.6924 1.2902 42 1 -0.7198 -17.0581 -1.1166 43 1 -1.7107 -15.5763 -0.9021 44 1 -0.2884 -14.7576 -2.6018 45 1 1.0343 -15.8805 -2.1627 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831085105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:27 Heat of formation + Delta-G solvation = -21.697285 kcal Electronic energy + Delta-G solvation = -22737.040923 eV Core-core repulsion = 19266.051246 eV Total energy + Delta-G solvation = -3470.989676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.75682 -39.67706 -37.06764 -35.46121 -34.76411 -32.64341 -31.92365 -29.70237 -28.95887 -27.89678 -25.89384 -24.52548 -22.79096 -22.08500 -21.51411 -20.31100 -19.93537 -19.33117 -18.35486 -16.80173 -16.57633 -16.21862 -15.98263 -15.93984 -14.99162 -14.69597 -14.47206 -14.34421 -14.21694 -13.97582 -13.54977 -13.47743 -13.31791 -12.65269 -12.52126 -12.33266 -12.24009 -11.77136 -11.74357 -11.65936 -11.58765 -11.57675 -11.49277 -10.94439 -10.51687 -10.49589 -10.37856 -9.96907 -9.80361 -9.62188 -9.58028 -9.20930 -9.19837 -8.98888 -8.94264 -8.27685 -5.92545 -3.95157 0.29025 0.77956 1.36587 2.29457 2.73920 2.96761 3.36594 3.37141 3.41471 3.43741 3.98395 4.16919 4.41182 4.43110 4.51163 4.53534 4.58742 4.87875 4.93577 5.02381 5.08284 5.11049 5.21544 5.33194 5.35032 5.37882 5.42304 5.43389 5.52409 5.57688 5.61022 5.76470 5.89420 6.17165 6.25328 6.33859 6.57926 6.87321 7.05378 7.23034 7.31371 7.40985 7.76665 7.93222 8.08914 8.26469 8.50608 9.12360 9.68313 11.18702 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.041104 B = 0.001480 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.029995 B =18916.957141 C =19095.322880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.512 3.488 14 O -0.533 6.533 15 N -0.739 5.739 16 C 0.126 3.874 17 C -0.054 4.054 18 C 0.060 3.940 19 N -0.460 5.460 20 C 0.045 3.955 21 C -0.252 4.252 22 S 0.145 5.855 23 C -0.039 4.039 24 C -0.116 4.116 25 C -0.041 4.041 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.401 0.599 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.099 -37.194 1.262 37.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.178 4.178 13 C 0.300 3.700 14 O -0.409 6.409 15 N -0.393 5.393 16 C 0.001 3.999 17 C -0.095 4.095 18 C -0.221 4.221 19 N -0.173 5.173 20 C -0.085 4.085 21 C -0.373 4.373 22 S 0.403 5.597 23 C -0.079 4.079 24 C -0.155 4.155 25 C -0.081 4.081 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.235 0.765 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.305 -36.627 1.851 36.926 hybrid contribution 0.733 0.473 -0.680 1.106 sum 5.038 -36.154 1.171 36.522 Atomic orbital electron populations 1.69966 1.06043 1.26590 1.50848 1.25036 0.94836 0.99197 0.95461 0.86671 0.79570 0.83274 0.78528 1.20304 1.21328 1.20299 1.21253 0.92949 0.91233 1.50527 0.92807 1.19097 0.94076 0.91264 0.97324 1.21651 0.99076 0.94003 1.00066 1.21459 0.97045 0.92718 1.02983 1.21794 1.00085 0.91835 1.04051 1.21129 0.88466 0.85482 0.74925 1.90718 1.14292 1.87623 1.48220 1.46029 1.10269 1.05423 1.77614 1.21201 0.93984 0.81497 1.03240 1.20434 0.96958 0.86884 1.05231 1.26404 1.03589 1.01496 0.90565 1.65351 1.12736 1.07038 1.32184 1.21651 0.99687 0.93067 0.94140 1.27089 1.09462 1.03765 0.96985 1.83833 1.50822 1.14160 1.10910 1.20670 0.97852 0.90577 0.98761 1.22414 0.98922 1.00966 0.93237 1.20915 0.97875 0.92544 0.96747 0.93011 0.96587 0.96582 0.93473 0.93463 0.91802 0.91799 0.89059 0.89052 0.76496 0.90823 0.91270 0.88679 0.87819 0.89691 0.90243 0.89347 0.90191 0.89816 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.29 55.43 0.74 -26.98 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.14 -1.82 5.70 -27.88 -0.16 -1.97 16 13 C 0.51 7.16 7.83 -10.98 -0.09 7.07 16 14 O -0.53 -9.96 15.98 5.56 0.09 -9.87 16 15 N -0.74 -7.16 5.56 -60.29 -0.33 -7.50 16 16 C 0.13 1.22 5.66 -4.04 -0.02 1.20 16 17 C -0.05 -0.37 5.91 -27.88 -0.16 -0.54 16 18 C 0.06 0.55 6.62 -13.74 -0.09 0.45 16 19 N -0.46 -5.07 10.54 -7.23 -0.08 -5.15 16 20 C 0.05 0.43 7.70 -82.45 -0.63 -0.21 16 21 C -0.25 -2.08 7.42 -35.34 -0.26 -2.34 16 22 S 0.15 1.15 23.18 -107.50 -2.49 -1.34 16 23 C -0.04 -0.20 6.79 -26.70 -0.18 -0.38 16 24 C -0.12 -0.47 7.14 -25.29 -0.18 -0.65 16 25 C -0.04 -0.25 6.81 -26.16 -0.18 -0.43 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.40 2.48 8.47 -40.82 -0.35 2.13 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.44 8.14 -51.92 -0.42 0.01 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -36.48 387.18 -11.53 -48.01 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -7.49 Total: -4.23 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -2.77 Total: -15.79 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.33 Total: -39.63 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.49 Total: -1.34 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.48 -11.53 -48.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831085105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.311 kcal (2) G-P(sol) polarization free energy of solvation -36.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds