Wall clock time and date at job start Tue Mar 31 2020 13:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99699 * 2 1 4 4 H 1.48495 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47294 * 299.99692 * 3 2 1 6 6 H 1.48497 * 109.47084 * 59.99863 * 3 2 1 7 7 C 1.37876 * 120.00510 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00341 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99499 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47000 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00163 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99783 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99854 * 179.97438 * 11 10 9 14 14 N 1.46899 * 109.46798 * 180.02562 * 13 11 10 15 15 C 1.47012 * 111.00043 * 66.36934 * 14 13 11 16 16 C 1.53095 * 109.25540 * 182.39076 * 15 14 13 17 17 O 1.43013 * 109.26408 * 303.14808 * 16 15 14 18 18 C 1.43017 * 113.73449 * 58.66911 * 17 16 15 19 19 C 1.47019 * 110.99801 * 190.00523 * 14 13 11 20 20 H 1.09005 * 109.50364 * 297.58063 * 19 14 13 21 21 C 1.50696 * 109.50883 * 57.67396 * 19 14 13 22 22 C 1.38248 * 119.97128 * 220.00109 * 21 19 14 23 23 C 1.38196 * 120.02484 * 179.97438 * 22 21 19 24 24 C 1.38458 * 119.97492 * 359.97438 * 23 22 21 25 25 F 1.35104 * 120.02786 * 179.97438 * 24 23 22 26 26 C 1.38465 * 119.94675 * 0.24873 * 24 23 22 27 27 C 1.38196 * 119.97501 * 359.51590 * 26 24 23 28 28 H 0.97001 * 120.00427 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47315 * 60.00103 * 9 7 2 30 30 H 1.08998 * 109.46823 * 299.99406 * 9 7 2 31 31 H 0.97004 * 119.99791 * 359.97438 * 10 9 7 32 32 H 1.09008 * 109.47058 * 60.00404 * 13 11 10 33 33 H 1.08994 * 109.47643 * 300.00441 * 13 11 10 34 34 H 1.08996 * 109.50458 * 302.32262 * 15 14 13 35 35 H 1.08996 * 109.50525 * 62.41529 * 15 14 13 36 36 H 1.09001 * 109.50928 * 63.08615 * 16 15 14 37 37 H 1.09000 * 109.50774 * 183.21334 * 16 15 14 38 38 H 1.09005 * 109.50620 * 181.39759 * 18 17 16 39 39 H 1.09005 * 109.50532 * 61.26769 * 18 17 16 40 40 H 1.08001 * 119.98900 * 359.97438 * 22 21 19 41 41 H 1.07996 * 120.01603 * 179.97438 * 23 22 21 42 42 H 1.08007 * 120.01049 * 179.72700 * 26 24 23 43 43 H 1.07993 * 119.98770 * 180.23077 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5616 -5.1049 0.0011 13 6 2.7333 -6.0287 0.0005 14 7 1.9989 -7.3009 0.0006 15 6 1.2585 -7.4819 -1.2565 16 6 0.4622 -8.7878 -1.1899 17 8 1.3562 -9.8727 -0.9272 18 6 2.0933 -9.7293 0.2900 19 6 2.9062 -8.4330 0.2385 20 1 3.6349 -8.4915 -0.5700 21 6 3.6233 -8.2363 1.5492 22 6 4.9622 -8.5626 1.6596 23 6 5.6211 -8.3822 2.8609 24 6 4.9400 -7.8740 3.9540 25 9 5.5830 -7.6976 5.1291 26 6 3.5979 -7.5519 3.8435 27 6 2.9423 -7.7286 2.6398 28 1 -0.4851 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6242 -2.5566 0.8903 31 1 3.1568 -3.4353 0.0002 32 1 3.3606 -5.9708 0.8901 33 1 3.3594 -5.9711 -0.8899 34 1 0.5745 -6.6454 -1.3997 35 1 1.9603 -7.5249 -2.0893 36 1 -0.2766 -8.7233 -0.3910 37 1 -0.0432 -8.9549 -2.1411 38 1 2.7677 -10.5773 0.4091 39 1 1.4020 -9.6922 1.1319 40 1 5.4935 -8.9586 0.8067 41 1 6.6669 -8.6375 2.9471 42 1 3.0644 -7.1595 4.6967 43 1 1.8964 -7.4739 2.5524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832117217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:24 Heat of formation + Delta-G solvation = -90.990736 kcal Electronic energy + Delta-G solvation = -27234.184949 eV Core-core repulsion = 23193.977307 eV Total energy + Delta-G solvation = -4040.207642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.06039 -40.57301 -38.86896 -38.40938 -35.60921 -34.17379 -32.57082 -32.36381 -31.35308 -29.70617 -28.89444 -27.17609 -24.86052 -24.35807 -23.34058 -22.36707 -21.92079 -20.20791 -19.69840 -17.87912 -17.26784 -16.85476 -16.62018 -16.32063 -15.79544 -15.73932 -15.63616 -15.25793 -15.11766 -14.69966 -14.49577 -14.30449 -14.08613 -13.75098 -13.50123 -13.45715 -13.21367 -12.89222 -12.58251 -12.24649 -12.07335 -11.94262 -11.68389 -11.49370 -11.23887 -11.10958 -10.97145 -10.89834 -10.66455 -10.33790 -9.94679 -9.40802 -9.31296 -9.05545 -8.77312 -8.73722 -8.39492 -7.90084 -6.19504 -4.26392 0.86750 1.02681 3.21504 3.26977 3.29281 3.31842 3.32001 3.48745 3.70302 4.06266 4.16058 4.34734 4.48195 4.53769 4.67280 4.76015 4.90580 4.99011 5.08900 5.13074 5.16803 5.19669 5.21375 5.38868 5.46378 5.54343 5.57044 5.60829 5.69194 5.78587 5.87945 5.90921 5.97303 6.07420 6.28056 6.65949 6.78447 6.86606 7.03880 7.28126 7.40761 7.48525 7.64275 7.94070 8.59359 8.75663 9.07095 9.40560 10.90679 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.003493 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.940894 B = 8014.146609 C =10048.005577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.252 3.748 10 N -0.713 5.713 11 C 0.500 3.500 12 O -0.540 6.540 13 C 0.032 3.968 14 N -0.509 5.509 15 C 0.014 3.986 16 C 0.065 3.935 17 O -0.387 6.387 18 C 0.076 3.924 19 C 0.090 3.910 20 H 0.060 0.940 21 C -0.096 4.096 22 C -0.084 4.084 23 C -0.157 4.157 24 C 0.098 3.902 25 F -0.142 7.142 26 C -0.154 4.154 27 C -0.060 4.060 28 H 0.265 0.735 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.389 0.611 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.113 0.887 35 H 0.037 0.963 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.461 -20.214 2.200 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.362 5.362 11 C 0.284 3.716 12 O -0.418 6.418 13 C -0.099 4.099 14 N -0.234 5.234 15 C -0.113 4.113 16 C -0.012 4.012 17 O -0.305 6.305 18 C -0.001 4.001 19 C -0.019 4.019 20 H 0.078 0.922 21 C -0.096 4.096 22 C -0.103 4.103 23 C -0.175 4.175 24 C 0.079 3.921 25 F -0.120 7.120 26 C -0.173 4.173 27 C -0.078 4.078 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.222 0.778 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.110 -20.355 2.492 22.052 hybrid contribution 1.702 1.475 -0.197 2.261 sum 9.811 -18.880 2.295 21.400 Atomic orbital electron populations 1.69978 1.06103 1.27214 1.48962 1.24943 0.94899 0.99443 0.94670 0.86374 0.79848 0.82995 0.77783 1.19641 1.20782 1.20766 1.21262 0.93291 0.90465 1.53143 0.91890 1.19091 0.88237 0.81886 0.97691 1.46463 1.11122 1.06091 1.72556 1.20215 0.89453 0.84037 0.77863 1.90618 1.16559 1.84523 1.50119 1.22085 0.95676 0.89257 1.02889 1.61869 1.25929 1.00026 1.35599 1.22999 0.98530 1.00631 0.89153 1.22705 0.91643 0.84835 1.02012 1.87971 1.56893 1.44439 1.41193 1.22643 0.94472 0.95297 0.87683 1.21232 0.93878 0.92719 0.94050 0.92234 1.19703 0.93710 1.00971 0.95258 1.20874 0.93545 0.98708 0.97127 1.21063 1.00943 1.03075 0.92467 1.17797 0.91200 1.01284 0.81800 1.91503 1.81752 1.93219 1.45543 1.21261 0.93045 1.03152 0.99843 1.21076 1.01239 0.94994 0.90488 0.92487 0.95606 0.95507 0.77828 0.88083 0.92331 0.86867 0.94460 0.91803 0.88363 0.88453 0.91912 0.85071 0.84780 0.84556 0.83733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 10 N -0.71 -14.54 5.55 -61.47 -0.34 -14.88 16 11 C 0.50 9.46 7.54 -10.99 -0.08 9.38 16 12 O -0.54 -12.12 14.35 5.56 0.08 -12.04 16 13 C 0.03 0.44 5.10 -4.98 -0.03 0.42 16 14 N -0.51 -6.63 3.59 -229.16 -0.82 -7.45 16 15 C 0.01 0.19 5.29 -3.71 -0.02 0.17 16 16 C 0.06 0.75 7.01 37.21 0.26 1.01 16 17 O -0.39 -4.54 10.83 -35.23 -0.38 -4.92 16 18 C 0.08 0.76 6.27 37.21 0.23 0.99 16 19 C 0.09 0.93 2.19 -68.75 -0.15 0.78 16 20 H 0.06 0.59 8.00 -51.93 -0.42 0.18 16 21 C -0.10 -0.94 3.63 -104.62 -0.38 -1.32 16 22 C -0.08 -0.71 9.67 -39.59 -0.38 -1.09 16 23 C -0.16 -1.40 10.03 -39.52 -0.40 -1.80 16 24 C 0.10 1.05 7.30 -39.42 -0.29 0.76 16 25 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 26 C -0.15 -1.64 10.03 -39.51 -0.40 -2.03 16 27 C -0.06 -0.65 8.32 -39.59 -0.33 -0.98 16 28 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.39 6.86 8.32 -40.82 -0.34 6.52 16 32 H 0.10 1.30 6.08 -51.92 -0.32 0.99 16 33 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.11 1.80 5.88 -51.93 -0.31 1.50 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.13 0.83 8.04 -52.49 -0.42 0.41 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 43 H 0.14 1.73 7.72 -52.49 -0.40 1.32 16 LS Contribution 359.43 15.07 5.42 5.42 Total: -1.00 -31.43 359.43 -8.66 -40.09 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.96 Total: 5.22 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.40 Total: -0.42 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.43 Total: -47.40 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.30 Total: -16.97 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.43 -8.66 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832117217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.899 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds