Wall clock time and date at job start Tue Mar 31 2020 13:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99699 * 2 1 4 4 H 1.48495 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47294 * 299.99692 * 3 2 1 6 6 H 1.48497 * 109.47084 * 59.99863 * 3 2 1 7 7 C 1.37876 * 120.00510 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00341 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99499 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47000 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00163 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99783 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99854 * 179.97438 * 11 10 9 14 14 N 1.46899 * 109.46798 * 180.02562 * 13 11 10 15 15 C 1.47012 * 111.00043 * 66.36934 * 14 13 11 16 16 C 1.53095 * 109.25540 * 182.39076 * 15 14 13 17 17 O 1.43013 * 109.26408 * 303.14808 * 16 15 14 18 18 C 1.43017 * 113.73449 * 58.66911 * 17 16 15 19 19 C 1.47019 * 110.99801 * 190.00523 * 14 13 11 20 20 H 1.09005 * 109.50364 * 297.58063 * 19 14 13 21 21 C 1.50696 * 109.50883 * 57.67396 * 19 14 13 22 22 C 1.38248 * 119.97128 * 220.00109 * 21 19 14 23 23 C 1.38196 * 120.02484 * 179.97438 * 22 21 19 24 24 C 1.38458 * 119.97492 * 359.97438 * 23 22 21 25 25 F 1.35104 * 120.02786 * 179.97438 * 24 23 22 26 26 C 1.38465 * 119.94675 * 0.24873 * 24 23 22 27 27 C 1.38196 * 119.97501 * 359.51590 * 26 24 23 28 28 H 0.97001 * 120.00427 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47315 * 60.00103 * 9 7 2 30 30 H 1.08998 * 109.46823 * 299.99406 * 9 7 2 31 31 H 0.97004 * 119.99791 * 359.97438 * 10 9 7 32 32 H 1.09008 * 109.47058 * 60.00404 * 13 11 10 33 33 H 1.08994 * 109.47643 * 300.00441 * 13 11 10 34 34 H 1.08996 * 109.50458 * 302.32262 * 15 14 13 35 35 H 1.08996 * 109.50525 * 62.41529 * 15 14 13 36 36 H 1.09001 * 109.50928 * 63.08615 * 16 15 14 37 37 H 1.09000 * 109.50774 * 183.21334 * 16 15 14 38 38 H 1.09005 * 109.50620 * 181.39759 * 18 17 16 39 39 H 1.09005 * 109.50532 * 61.26769 * 18 17 16 40 40 H 1.08001 * 119.98900 * 359.97438 * 22 21 19 41 41 H 1.07996 * 120.01603 * 179.97438 * 23 22 21 42 42 H 1.08007 * 120.01049 * 179.72700 * 26 24 23 43 43 H 1.07993 * 119.98770 * 180.23077 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5616 -5.1049 0.0011 13 6 2.7333 -6.0287 0.0005 14 7 1.9989 -7.3009 0.0006 15 6 1.2585 -7.4819 -1.2565 16 6 0.4622 -8.7878 -1.1899 17 8 1.3562 -9.8727 -0.9272 18 6 2.0933 -9.7293 0.2900 19 6 2.9062 -8.4330 0.2385 20 1 3.6349 -8.4915 -0.5700 21 6 3.6233 -8.2363 1.5492 22 6 4.9622 -8.5626 1.6596 23 6 5.6211 -8.3822 2.8609 24 6 4.9400 -7.8740 3.9540 25 9 5.5830 -7.6976 5.1291 26 6 3.5979 -7.5519 3.8435 27 6 2.9423 -7.7286 2.6398 28 1 -0.4851 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6242 -2.5566 0.8903 31 1 3.1568 -3.4353 0.0002 32 1 3.3606 -5.9708 0.8901 33 1 3.3594 -5.9711 -0.8899 34 1 0.5745 -6.6454 -1.3997 35 1 1.9603 -7.5249 -2.0893 36 1 -0.2766 -8.7233 -0.3910 37 1 -0.0432 -8.9549 -2.1411 38 1 2.7677 -10.5773 0.4091 39 1 1.4020 -9.6922 1.1319 40 1 5.4935 -8.9586 0.8067 41 1 6.6669 -8.6375 2.9471 42 1 3.0644 -7.1595 4.6967 43 1 1.8964 -7.4739 2.5524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832117217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:23 Heat of formation + Delta-G solvation = -112.739405 kcal Electronic energy + Delta-G solvation = -27235.128042 eV Core-core repulsion = 23193.977307 eV Total energy + Delta-G solvation = -4041.150735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.89377 -41.54924 -40.19340 -39.39252 -36.69931 -36.00408 -34.34736 -33.45190 -32.09236 -30.91522 -29.89627 -28.86464 -26.16738 -25.22813 -24.23782 -24.09151 -22.76339 -21.43448 -21.01965 -18.98961 -18.66726 -17.87356 -17.59138 -17.43240 -17.14983 -16.91719 -16.57329 -16.54140 -16.45824 -16.01800 -15.57775 -15.47595 -15.28251 -14.72931 -14.52195 -14.42505 -14.27682 -14.17007 -13.95615 -13.83748 -13.57192 -12.95880 -12.88211 -12.84718 -12.72271 -12.34969 -12.26499 -12.18807 -11.90554 -11.59064 -11.45980 -10.95244 -10.81578 -10.53462 -10.04485 -9.81622 -9.53784 -9.39399 -8.29842 -6.46045 0.09252 0.29261 1.42641 1.43355 1.56704 1.77943 2.19500 2.39826 2.58181 2.85195 2.93744 3.05383 3.30005 3.63355 3.76586 3.84808 3.93710 3.99235 4.09617 4.14987 4.18884 4.29919 4.35781 4.37880 4.43952 4.49432 4.75359 4.78889 4.89177 4.95805 5.01137 5.02771 5.11142 5.18211 5.25113 5.28113 5.47409 5.50118 5.67868 5.79431 5.85529 5.90353 5.96302 6.15478 6.65363 6.93465 7.23606 7.51315 8.82418 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.003493 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.940894 B = 8014.146609 C =10048.005577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.270 3.730 10 N -0.710 5.710 11 C 0.497 3.503 12 O -0.579 6.579 13 C 0.050 3.950 14 N -0.526 5.526 15 C 0.018 3.982 16 C 0.070 3.930 17 O -0.392 6.392 18 C 0.073 3.927 19 C 0.097 3.903 20 H 0.077 0.923 21 C -0.096 4.096 22 C -0.072 4.072 23 C -0.150 4.150 24 C 0.082 3.918 25 F -0.151 7.151 26 C -0.165 4.165 27 C -0.071 4.071 28 H 0.268 0.732 29 H -0.012 1.012 30 H -0.014 1.014 31 H 0.406 0.594 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.115 0.885 38 H 0.125 0.875 39 H 0.054 0.946 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.135 0.865 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.855 -21.179 1.533 24.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.805 3.195 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.100 0.900 9 C 0.147 3.853 10 N -0.361 5.361 11 C 0.284 3.716 12 O -0.460 6.460 13 C -0.081 4.081 14 N -0.252 5.252 15 C -0.110 4.110 16 C -0.007 4.007 17 O -0.311 6.311 18 C -0.004 4.004 19 C -0.011 4.011 20 H 0.095 0.905 21 C -0.097 4.097 22 C -0.090 4.090 23 C -0.168 4.168 24 C 0.063 3.937 25 F -0.129 7.129 26 C -0.184 4.184 27 C -0.089 4.089 28 H 0.077 0.923 29 H 0.006 0.994 30 H 0.004 0.996 31 H 0.241 0.759 32 H 0.134 0.866 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.133 0.867 38 H 0.142 0.858 39 H 0.073 0.927 40 H 0.181 0.819 41 H 0.175 0.825 42 H 0.153 0.847 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.548 -21.361 1.830 24.351 hybrid contribution 0.593 1.683 0.038 1.785 sum 12.141 -19.678 1.868 23.197 Atomic orbital electron populations 1.70135 1.08224 1.28459 1.50083 1.26025 0.95735 1.03789 0.93893 0.85149 0.79115 0.77515 0.77682 1.17703 1.20402 1.20544 1.21649 0.94260 0.90667 1.52707 0.89961 1.18495 0.88592 0.84209 0.94014 1.46199 1.11102 1.05594 1.73197 1.21185 0.89910 0.84575 0.75931 1.90608 1.18897 1.85104 1.51362 1.21913 0.94055 0.87387 1.04696 1.61788 1.27073 1.00546 1.35769 1.22876 0.98357 1.00092 0.89673 1.22658 0.91272 0.84233 1.02524 1.87967 1.56956 1.44204 1.41924 1.22818 0.94624 0.96126 0.86787 1.21264 0.93693 0.91440 0.94735 0.90476 1.19700 0.94394 1.01114 0.94461 1.21155 0.92663 0.97341 0.97835 1.21353 1.01973 1.01714 0.91799 1.18020 0.91270 1.02210 0.82184 1.91479 1.81828 1.93415 1.46212 1.21291 0.93504 1.03670 0.99899 1.20936 1.00542 0.96210 0.91237 0.92277 0.99392 0.99600 0.75869 0.86570 0.89728 0.90300 0.93306 0.92991 0.86705 0.85758 0.92738 0.81881 0.82482 0.84734 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.98 42.13 29.54 68.60 2.03 44.16 16 4 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.56 -29.96 9.28 25.60 0.24 -29.73 16 8 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 9 C 0.27 14.64 5.43 85.63 0.46 15.11 16 10 N -0.71 -29.37 5.55 -466.79 -2.59 -31.96 16 11 C 0.50 19.15 7.54 87.66 0.66 19.81 16 12 O -0.58 -27.36 14.35 -3.02 -0.04 -27.41 16 13 C 0.05 1.31 5.10 85.56 0.44 1.75 16 14 N -0.53 -13.13 3.59 -878.94 -3.16 -16.29 16 15 C 0.02 0.46 5.29 86.31 0.46 0.91 16 16 C 0.07 1.57 7.01 72.01 0.50 2.07 16 17 O -0.39 -8.43 10.83 -148.98 -1.61 -10.04 16 18 C 0.07 1.29 6.27 72.01 0.45 1.74 16 19 C 0.10 1.74 2.19 44.18 0.10 1.84 16 20 H 0.08 1.19 8.00 -2.38 -0.02 1.17 16 21 C -0.10 -1.64 3.63 -19.86 -0.07 -1.71 16 22 C -0.07 -0.92 9.67 22.26 0.22 -0.70 16 23 C -0.15 -2.19 10.03 22.31 0.22 -1.96 16 24 C 0.08 1.62 7.30 22.38 0.16 1.79 16 25 F -0.15 -3.33 17.27 44.97 0.78 -2.56 16 26 C -0.16 -3.44 10.03 22.31 0.22 -3.22 16 27 C -0.07 -1.49 8.32 22.26 0.19 -1.30 16 28 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 29 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 31 H 0.41 13.92 8.32 -92.71 -0.77 13.15 16 32 H 0.12 2.74 6.08 -2.38 -0.01 2.73 16 33 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 34 H 0.08 2.61 5.88 -2.39 -0.01 2.60 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.05 1.05 8.14 -2.38 -0.02 1.04 16 40 H 0.16 1.10 8.04 -2.91 -0.02 1.08 16 41 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 42 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.13 3.10 7.72 -2.91 -0.02 3.08 16 Total: -1.00 -71.20 359.43 0.65 -70.54 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.26 Total: 22.00 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 4.71 Total: 7.14 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -5.46 Total: -103.84 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -1.66 Total: -37.45 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -71.20 0.65 -70.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832117217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.196 kcal (2) G-P(sol) polarization free energy of solvation -71.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds