Wall clock time and date at job start Tue Mar 31 2020 13:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99794 * 2 1 4 4 H 1.48503 * 109.47202 * 274.06122 * 3 2 1 5 5 H 1.48500 * 109.47335 * 34.06380 * 3 2 1 6 6 H 1.48495 * 109.47213 * 154.06128 * 3 2 1 7 7 C 1.38807 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99949 * 197.53286 * 7 2 1 9 9 N 1.36938 * 120.00109 * 17.52669 * 7 2 1 10 10 C 1.46920 * 120.63112 * 207.99896 * 9 7 2 11 11 C 1.53197 * 108.77428 * 233.63460 * 10 9 7 12 12 C 1.53042 * 109.30830 * 305.36208 * 11 10 9 13 13 N 1.46907 * 109.45709 * 181.38950 * 12 11 10 14 14 C 1.46895 * 111.00043 * 155.00635 * 13 12 11 15 15 H 1.08993 * 109.47267 * 34.99320 * 14 13 12 16 16 C 1.50706 * 109.46618 * 274.99671 * 14 13 12 17 17 O 1.20819 * 120.00381 * 359.97438 * 16 14 13 18 18 O 1.34236 * 119.99746 * 180.02562 * 16 14 13 19 19 C 1.50698 * 109.47108 * 154.99861 * 14 13 12 20 20 C 1.38221 * 120.01637 * 24.99662 * 19 14 13 21 21 C 1.38219 * 120.02841 * 179.97438 * 20 19 14 22 22 C 1.38274 * 120.04983 * 0.02562 * 21 20 19 23 23 C 1.38174 * 120.02337 * 0.27304 * 22 21 20 24 24 C 1.38443 * 120.01262 * 204.97327 * 19 14 13 25 25 F 1.35103 * 120.02149 * 0.04394 * 24 19 14 26 26 C 1.53041 * 109.53695 * 61.37104 * 12 11 10 27 27 C 1.46926 * 120.62723 * 28.02424 * 9 7 2 28 28 H 0.97001 * 120.00038 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.58775 * 113.84852 * 10 9 7 30 30 H 1.09005 * 109.70741 * 353.48835 * 10 9 7 31 31 H 1.08999 * 109.49777 * 185.41624 * 11 10 9 32 32 H 1.08992 * 109.52656 * 65.33074 * 11 10 9 33 33 H 1.08991 * 109.46433 * 301.35717 * 12 11 10 34 34 H 1.00900 * 111.00228 * 31.04615 * 13 12 11 35 35 H 0.96703 * 116.99672 * 180.02562 * 18 16 14 36 36 H 1.08003 * 119.98204 * 0.02562 * 20 19 14 37 37 H 1.08000 * 119.97750 * 179.97438 * 21 20 19 38 38 H 1.07996 * 119.98310 * 180.02562 * 22 21 20 39 39 H 1.08005 * 120.00889 * 179.72071 * 23 22 21 40 40 H 1.08997 * 109.50105 * 58.58342 * 26 12 11 41 41 H 1.09001 * 109.49710 * 178.67992 * 26 12 11 42 42 H 1.09001 * 109.58712 * 246.15484 * 27 9 7 43 43 H 1.09001 * 109.58708 * 6.43582 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4118 2.0961 -1.3966 5 1 1.4932 2.6264 0.7842 6 1 3.5880 1.4170 0.6124 7 6 2.0103 -1.2021 0.0005 8 1 3.0526 -1.2237 0.2823 9 7 1.3733 -2.3607 -0.3561 10 6 1.8146 -3.6541 0.1833 11 6 2.0776 -4.6111 -0.9837 12 6 0.8285 -4.6905 -1.8644 13 7 1.0656 -5.6329 -2.9661 14 6 -0.1992 -6.1906 -3.4633 15 1 -0.9785 -5.4307 -3.4067 16 6 -0.5915 -7.3761 -2.6195 17 8 0.1107 -7.7212 -1.6989 18 8 -1.7206 -8.0492 -2.8914 19 6 -0.0270 -6.6280 -4.8950 20 6 1.2273 -6.9628 -5.3696 21 6 1.3855 -7.3646 -6.6826 22 6 0.2895 -7.4316 -7.5231 23 6 -0.9643 -7.0914 -7.0525 24 6 -1.1251 -6.6952 -5.7355 25 9 -2.3514 -6.3677 -5.2728 26 6 0.5166 -3.3056 -2.4363 27 6 0.2359 -2.3339 -1.2858 28 1 -0.4850 0.8400 -0.0004 29 1 1.0368 -4.0665 0.8259 30 1 2.7305 -3.5192 0.7587 31 1 2.3126 -5.6021 -0.5956 32 1 2.9164 -4.2433 -1.5745 33 1 -0.0156 -5.0351 -1.2672 34 1 1.6984 -6.3666 -2.6845 35 1 -1.9306 -8.8023 -2.3223 36 1 2.0839 -6.9113 -4.7139 37 1 2.3659 -7.6256 -7.0527 38 1 0.4143 -7.7460 -8.5487 39 1 -1.8195 -7.1395 -7.7105 40 1 1.3700 -2.9496 -3.0133 41 1 -0.3594 -3.3676 -3.0821 42 1 -0.6707 -2.6386 -0.7630 43 1 0.1092 -1.3253 -1.6793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:13 Heat of formation + Delta-G solvation = -82.962880 kcal Electronic energy + Delta-G solvation = -27826.012905 eV Core-core repulsion = 23786.153377 eV Total energy + Delta-G solvation = -4039.859528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.97972 -40.79948 -39.08512 -37.98993 -36.35706 -35.26617 -32.94769 -31.22504 -30.73487 -29.94466 -29.12858 -26.81495 -24.54195 -23.03818 -22.81457 -22.27530 -21.50030 -20.56722 -19.14968 -18.32445 -17.80440 -17.21167 -16.85437 -16.51760 -16.32009 -15.59469 -15.41146 -14.98777 -14.56471 -14.46177 -14.26934 -13.95082 -13.49657 -13.45040 -13.26689 -13.10435 -12.78011 -12.46908 -12.37853 -12.21643 -11.77846 -11.64412 -11.42593 -11.21817 -11.09138 -11.00776 -10.87942 -10.71157 -10.22085 -10.21459 -9.90131 -9.58477 -9.53902 -9.16994 -8.85768 -8.63051 -8.40772 -6.65533 -5.76307 -3.18354 0.88430 1.02483 1.99762 2.85144 3.40087 3.41491 3.47287 3.48597 3.93840 4.13045 4.35279 4.52417 4.60670 4.71930 4.97793 5.02266 5.13726 5.21926 5.35150 5.42410 5.48873 5.60806 5.68319 5.84159 5.87055 5.91061 6.06179 6.14155 6.18155 6.28084 6.34222 6.37118 6.52341 6.62133 6.66766 6.73385 6.77784 7.00093 7.11224 7.29946 7.42506 7.68527 7.69848 7.82798 8.47880 9.24011 9.87473 10.44441 11.32460 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.003292 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.795497 B = 8504.396370 C = 8912.513196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.149 3.851 11 C -0.131 4.131 12 C 0.094 3.906 13 N -0.650 5.650 14 C 0.139 3.861 15 H 0.129 0.871 16 C 0.457 3.543 17 O -0.510 6.510 18 O -0.509 6.509 19 C -0.111 4.111 20 C -0.059 4.059 21 C -0.136 4.136 22 C -0.088 4.088 23 C -0.160 4.160 24 C 0.120 3.880 25 F -0.131 7.131 26 C -0.127 4.127 27 C 0.171 3.829 28 H 0.253 0.747 29 H 0.016 0.984 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.349 0.651 35 H 0.406 0.594 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.015 0.985 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 -18.160 -13.978 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.022 3.978 11 C -0.171 4.171 12 C -0.014 4.014 13 N -0.283 5.283 14 C 0.026 3.974 15 H 0.146 0.854 16 C 0.297 3.703 17 O -0.398 6.398 18 O -0.319 6.319 19 C -0.113 4.113 20 C -0.077 4.077 21 C -0.154 4.154 22 C -0.106 4.106 23 C -0.179 4.179 24 C 0.100 3.900 25 F -0.109 7.109 26 C -0.167 4.167 27 C 0.044 3.956 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.170 0.830 35 H 0.264 0.736 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.215 -17.260 -14.384 22.501 hybrid contribution -0.300 -0.214 1.188 1.243 sum -1.515 -17.474 -13.196 21.950 Atomic orbital electron populations 1.70043 1.05272 1.25447 1.53984 1.25037 0.95269 0.98411 1.00930 0.86274 0.79154 0.83734 0.77604 1.21458 1.21839 1.20401 1.19213 0.92777 0.84890 1.41248 0.91636 1.44066 1.36420 1.01416 1.49514 1.20844 0.97713 0.86772 0.92514 1.22186 0.96981 0.99398 0.98514 1.21610 0.97922 0.92542 0.89306 1.61111 1.08428 1.19400 1.39333 1.20149 0.95884 0.91509 0.89861 0.85367 1.24794 0.78041 0.84081 0.83417 1.90728 1.52412 1.66509 1.30101 1.84625 1.42157 1.45373 1.59791 1.19425 0.93520 1.04251 0.94054 1.20943 0.96211 0.94760 0.95827 1.21219 0.99266 1.01173 0.93726 1.21044 0.91719 0.97880 0.99980 1.21097 0.99302 1.03467 0.94003 1.17500 0.79797 1.00021 0.92682 1.91528 1.40461 1.89811 1.89119 1.22265 1.00469 0.94156 0.99771 1.20793 0.88620 0.98355 0.87793 0.93676 0.96649 0.92520 0.92992 0.91355 0.94202 0.82992 0.73586 0.84357 0.85195 0.85099 0.84656 0.91685 0.93672 0.96712 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 11.22 55.49 0.62 -25.81 16 2 C 0.00 0.06 4.90 -17.43 -0.09 -0.03 16 3 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.97 9.58 -15.06 -0.14 -7.12 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -15.01 2.99 -172.32 -0.52 -15.53 16 10 C 0.15 3.19 6.51 -3.71 -0.02 3.17 16 11 C -0.13 -2.34 5.36 -26.61 -0.14 -2.48 16 12 C 0.09 1.64 2.10 -67.67 -0.14 1.49 16 13 N -0.65 -9.29 4.91 -102.13 -0.50 -9.79 16 14 C 0.14 1.85 2.30 -70.02 -0.16 1.69 16 15 H 0.13 1.83 6.75 -51.93 -0.35 1.48 16 16 C 0.46 6.08 7.31 36.01 0.26 6.35 16 17 O -0.51 -7.93 16.40 -18.74 -0.31 -8.24 16 18 O -0.51 -5.52 13.25 -39.27 -0.52 -6.04 16 19 C -0.11 -1.32 4.99 -104.55 -0.52 -1.84 16 20 C -0.06 -0.62 9.32 -39.59 -0.37 -0.98 16 21 C -0.14 -1.15 10.04 -39.58 -0.40 -1.54 16 22 C -0.09 -0.70 10.04 -39.59 -0.40 -1.09 16 23 C -0.16 -1.48 10.03 -39.52 -0.40 -1.88 16 24 C 0.12 1.39 7.19 -39.42 -0.28 1.11 16 25 F -0.13 -1.67 16.53 2.25 0.04 -1.63 16 26 C -0.13 -2.47 5.57 -26.61 -0.15 -2.62 16 27 C 0.17 4.13 5.31 -3.71 -0.02 4.11 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 1.18 7.94 -51.93 -0.41 0.77 16 31 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.04 0.75 7.63 -51.93 -0.40 0.35 16 34 H 0.35 4.76 6.77 -39.29 -0.27 4.49 16 35 H 0.41 2.63 9.10 45.56 0.41 3.04 16 36 H 0.14 1.36 6.89 -52.48 -0.36 1.00 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 39 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.04 0.81 7.41 -51.93 -0.38 0.43 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -32.12 356.39 -8.81 -40.93 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.00 Total: 5.58 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.97 Total: -1.68 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.39 Total: -51.13 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.83 Total: -14.28 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.12 -8.81 -40.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.030 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds