Wall clock time and date at job start Tue Mar 31 2020 13:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99794 * 2 1 4 4 H 1.48503 * 109.47202 * 274.06122 * 3 2 1 5 5 H 1.48500 * 109.47335 * 34.06380 * 3 2 1 6 6 H 1.48495 * 109.47213 * 154.06128 * 3 2 1 7 7 C 1.38807 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99949 * 197.53286 * 7 2 1 9 9 N 1.36938 * 120.00109 * 17.52669 * 7 2 1 10 10 C 1.46920 * 120.63112 * 207.99896 * 9 7 2 11 11 C 1.53197 * 108.77428 * 233.63460 * 10 9 7 12 12 C 1.53042 * 109.30830 * 305.36208 * 11 10 9 13 13 N 1.46907 * 109.45709 * 181.38950 * 12 11 10 14 14 C 1.46895 * 111.00043 * 155.00635 * 13 12 11 15 15 H 1.08993 * 109.47267 * 34.99320 * 14 13 12 16 16 C 1.50706 * 109.46618 * 274.99671 * 14 13 12 17 17 O 1.20819 * 120.00381 * 359.97438 * 16 14 13 18 18 O 1.34236 * 119.99746 * 180.02562 * 16 14 13 19 19 C 1.50698 * 109.47108 * 154.99861 * 14 13 12 20 20 C 1.38221 * 120.01637 * 24.99662 * 19 14 13 21 21 C 1.38219 * 120.02841 * 179.97438 * 20 19 14 22 22 C 1.38274 * 120.04983 * 0.02562 * 21 20 19 23 23 C 1.38174 * 120.02337 * 0.27304 * 22 21 20 24 24 C 1.38443 * 120.01262 * 204.97327 * 19 14 13 25 25 F 1.35103 * 120.02149 * 0.04394 * 24 19 14 26 26 C 1.53041 * 109.53695 * 61.37104 * 12 11 10 27 27 C 1.46926 * 120.62723 * 28.02424 * 9 7 2 28 28 H 0.97001 * 120.00038 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.58775 * 113.84852 * 10 9 7 30 30 H 1.09005 * 109.70741 * 353.48835 * 10 9 7 31 31 H 1.08999 * 109.49777 * 185.41624 * 11 10 9 32 32 H 1.08992 * 109.52656 * 65.33074 * 11 10 9 33 33 H 1.08991 * 109.46433 * 301.35717 * 12 11 10 34 34 H 1.00900 * 111.00228 * 31.04615 * 13 12 11 35 35 H 0.96703 * 116.99672 * 180.02562 * 18 16 14 36 36 H 1.08003 * 119.98204 * 0.02562 * 20 19 14 37 37 H 1.08000 * 119.97750 * 179.97438 * 21 20 19 38 38 H 1.07996 * 119.98310 * 180.02562 * 22 21 20 39 39 H 1.08005 * 120.00889 * 179.72071 * 23 22 21 40 40 H 1.08997 * 109.50105 * 58.58342 * 26 12 11 41 41 H 1.09001 * 109.49710 * 178.67992 * 26 12 11 42 42 H 1.09001 * 109.58712 * 246.15484 * 27 9 7 43 43 H 1.09001 * 109.58708 * 6.43582 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4118 2.0961 -1.3966 5 1 1.4932 2.6264 0.7842 6 1 3.5880 1.4170 0.6124 7 6 2.0103 -1.2021 0.0005 8 1 3.0526 -1.2237 0.2823 9 7 1.3733 -2.3607 -0.3561 10 6 1.8146 -3.6541 0.1833 11 6 2.0776 -4.6111 -0.9837 12 6 0.8285 -4.6905 -1.8644 13 7 1.0656 -5.6329 -2.9661 14 6 -0.1992 -6.1906 -3.4633 15 1 -0.9785 -5.4307 -3.4067 16 6 -0.5915 -7.3761 -2.6195 17 8 0.1107 -7.7212 -1.6989 18 8 -1.7206 -8.0492 -2.8914 19 6 -0.0270 -6.6280 -4.8950 20 6 1.2273 -6.9628 -5.3696 21 6 1.3855 -7.3646 -6.6826 22 6 0.2895 -7.4316 -7.5231 23 6 -0.9643 -7.0914 -7.0525 24 6 -1.1251 -6.6952 -5.7355 25 9 -2.3514 -6.3677 -5.2728 26 6 0.5166 -3.3056 -2.4363 27 6 0.2359 -2.3339 -1.2858 28 1 -0.4850 0.8400 -0.0004 29 1 1.0368 -4.0665 0.8259 30 1 2.7305 -3.5192 0.7587 31 1 2.3126 -5.6021 -0.5956 32 1 2.9164 -4.2433 -1.5745 33 1 -0.0156 -5.0351 -1.2672 34 1 1.6984 -6.3666 -2.6845 35 1 -1.9306 -8.8023 -2.3223 36 1 2.0839 -6.9113 -4.7139 37 1 2.3659 -7.6256 -7.0527 38 1 0.4143 -7.7460 -8.5487 39 1 -1.8195 -7.1395 -7.7105 40 1 1.3700 -2.9496 -3.0133 41 1 -0.3594 -3.3676 -3.0821 42 1 -0.6707 -2.6386 -0.7630 43 1 0.1092 -1.3253 -1.6793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:12 Heat of formation + Delta-G solvation = -103.341936 kcal Electronic energy + Delta-G solvation = -27826.896607 eV Core-core repulsion = 23786.153377 eV Total energy + Delta-G solvation = -4040.743230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.85604 -41.84094 -39.91093 -39.46375 -37.47492 -36.61867 -34.53831 -32.73952 -31.67282 -31.44604 -30.56499 -28.02119 -26.35714 -24.04469 -23.85395 -23.74706 -22.92893 -21.63751 -20.82638 -19.32984 -18.86143 -18.50508 -18.27527 -17.54393 -17.17998 -16.86434 -16.47833 -16.31821 -16.01303 -15.66043 -15.45464 -15.34839 -15.00962 -14.82000 -14.58516 -14.18541 -14.04207 -13.84074 -13.67591 -13.21931 -13.10443 -12.96451 -12.74302 -12.68780 -12.60555 -12.45725 -12.11580 -12.09444 -12.00512 -11.87812 -11.80607 -11.34981 -11.22392 -10.56695 -9.91165 -9.86673 -9.58767 -8.71774 -7.88214 -5.33801 0.13295 0.30757 0.96253 1.47507 1.49090 1.58306 1.93361 2.51562 2.61812 2.86537 3.27858 3.34416 3.44128 3.65181 3.77483 3.92306 3.96711 4.05442 4.13421 4.24450 4.33264 4.44931 4.49563 4.50570 4.67133 4.76451 4.86921 4.91518 4.96863 5.04597 5.14310 5.15430 5.22095 5.33775 5.39735 5.40848 5.48076 5.50842 5.63309 5.68901 5.80049 5.97463 6.14460 6.38521 6.79806 7.13644 7.84047 8.36790 9.18850 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.003292 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.795497 B = 8504.396370 C = 8912.513196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.969 3.031 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.264 4.264 8 H 0.069 0.931 9 N -0.609 5.609 10 C 0.144 3.856 11 C -0.117 4.117 12 C 0.106 3.894 13 N -0.639 5.639 14 C 0.139 3.861 15 H 0.115 0.885 16 C 0.463 3.537 17 O -0.536 6.536 18 O -0.505 6.505 19 C -0.127 4.127 20 C -0.071 4.071 21 C -0.131 4.131 22 C -0.080 4.080 23 C -0.161 4.161 24 C 0.095 3.905 25 F -0.145 7.145 26 C -0.110 4.110 27 C 0.179 3.821 28 H 0.250 0.750 29 H 0.007 0.993 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.025 0.975 34 H 0.356 0.644 35 H 0.425 0.575 36 H 0.141 0.859 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.060 0.940 41 H 0.057 0.943 42 H -0.010 1.010 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.005 -19.730 -16.052 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.394 4.394 8 H 0.086 0.914 9 N -0.333 5.333 10 C 0.018 3.982 11 C -0.156 4.156 12 C -0.003 4.003 13 N -0.272 5.272 14 C 0.026 3.974 15 H 0.132 0.868 16 C 0.304 3.696 17 O -0.426 6.426 18 O -0.317 6.317 19 C -0.128 4.128 20 C -0.089 4.089 21 C -0.149 4.149 22 C -0.098 4.098 23 C -0.179 4.179 24 C 0.075 3.925 25 F -0.124 7.124 26 C -0.150 4.150 27 C 0.052 3.948 28 H 0.059 0.941 29 H 0.025 0.975 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.043 0.957 34 H 0.178 0.822 35 H 0.287 0.713 36 H 0.158 0.842 37 H 0.175 0.825 38 H 0.183 0.817 39 H 0.171 0.829 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.008 0.992 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.175 -18.882 -16.466 25.054 hybrid contribution -0.780 0.169 1.796 1.965 sum -0.605 -18.713 -14.670 23.786 Atomic orbital electron populations 1.70201 1.06778 1.25871 1.55384 1.25820 0.96024 1.01603 1.01139 0.85230 0.78227 0.79421 0.77438 1.21183 1.22225 1.19120 1.19557 0.93117 0.86027 1.40692 0.91359 1.44325 1.36456 1.02281 1.50195 1.20988 0.97367 0.85898 0.93939 1.21996 0.97068 0.99487 0.97095 1.21296 0.97192 0.91993 0.89793 1.60944 1.09265 1.19474 1.37522 1.20070 0.94806 0.91333 0.91146 0.86784 1.24680 0.78191 0.84041 0.82708 1.90714 1.53340 1.67428 1.31078 1.84577 1.40909 1.46054 1.60143 1.19358 0.94520 1.05910 0.93051 1.21095 0.95553 0.95271 0.97029 1.21582 1.00825 0.99660 0.92792 1.21474 0.90734 0.96171 1.01417 1.21410 1.00787 1.02590 0.93154 1.17800 0.79271 1.01565 0.93827 1.91486 1.41264 1.90194 1.89438 1.21985 1.00751 0.94390 0.97865 1.20572 0.87704 0.97720 0.88789 0.94110 0.97547 0.92108 0.90583 0.91100 0.95660 0.82151 0.71299 0.84158 0.82460 0.81696 0.82867 0.92135 0.92461 0.99158 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.57 11.22 21.65 0.24 -56.33 16 2 C -0.05 -2.88 4.90 84.86 0.42 -2.46 16 3 Si 0.97 45.50 29.59 68.60 2.03 47.53 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.26 -14.82 9.58 84.03 0.81 -14.02 16 8 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 9 N -0.61 -31.58 2.99 -699.11 -2.09 -33.67 16 10 C 0.14 6.21 6.51 86.37 0.56 6.78 16 11 C -0.12 -4.06 5.36 30.67 0.16 -3.90 16 12 C 0.11 3.66 2.10 44.94 0.09 3.75 16 13 N -0.64 -17.67 4.91 -477.04 -2.34 -20.01 16 14 C 0.14 3.66 2.30 43.42 0.10 3.76 16 15 H 0.11 3.31 6.75 -2.39 -0.02 3.30 16 16 C 0.46 12.05 7.31 71.24 0.52 12.57 16 17 O -0.54 -16.23 16.40 21.99 0.36 -15.87 16 18 O -0.50 -10.50 13.25 -51.47 -0.68 -11.18 16 19 C -0.13 -2.89 4.99 -19.82 -0.10 -2.99 16 20 C -0.07 -1.34 9.32 22.26 0.21 -1.13 16 21 C -0.13 -1.77 10.04 22.27 0.22 -1.54 16 22 C -0.08 -0.97 10.04 22.26 0.22 -0.75 16 23 C -0.16 -2.59 10.03 22.31 0.22 -2.37 16 24 C 0.09 2.10 7.19 22.38 0.16 2.27 16 25 F -0.15 -3.69 16.53 44.97 0.74 -2.95 16 26 C -0.11 -4.36 5.57 30.67 0.17 -4.19 16 27 C 0.18 8.96 5.31 86.36 0.46 9.42 16 28 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.06 2.53 7.94 -2.38 -0.02 2.51 16 31 H 0.08 2.30 8.10 -2.39 -0.02 2.28 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.03 0.95 7.63 -2.39 -0.02 0.94 16 34 H 0.36 9.18 6.77 -89.69 -0.61 8.58 16 35 H 0.43 4.96 9.10 -74.06 -0.67 4.29 16 36 H 0.14 2.49 6.89 -2.91 -0.02 2.47 16 37 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 38 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 39 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 40 H 0.06 2.45 8.14 -2.39 -0.02 2.44 16 41 H 0.06 2.10 7.41 -2.39 -0.02 2.08 16 42 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 43 H 0.06 3.21 6.06 -2.39 -0.01 3.19 16 Total: -1.00 -70.80 356.39 2.26 -68.54 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -0.23 Total: 18.73 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 4.23 Total: 5.21 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -4.19 Total: -110.01 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.32 Total: -27.05 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.74 Total: -2.95 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -70.80 2.26 -68.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.802 kcal (2) G-P(sol) polarization free energy of solvation -70.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds