Wall clock time and date at job start Tue Mar 31 2020 13:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00269 * 2 1 4 4 H 1.48506 * 109.47025 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46935 * 299.99949 * 3 2 1 6 6 H 1.48502 * 109.47195 * 60.00092 * 3 2 1 7 7 C 1.38816 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00065 * 163.06049 * 7 2 1 9 9 N 1.36947 * 119.99941 * 343.06035 * 7 2 1 10 10 C 1.46931 * 120.62735 * 331.84180 * 9 7 2 11 11 C 1.53195 * 108.77266 * 233.62890 * 10 9 7 12 12 C 1.53039 * 109.31227 * 305.36689 * 11 10 9 13 13 N 1.46899 * 109.45896 * 181.38699 * 12 11 10 14 14 C 1.46898 * 111.00232 * 154.97498 * 13 12 11 15 15 H 1.09008 * 109.46892 * 325.00041 * 14 13 12 16 16 C 1.50703 * 109.47240 * 84.99490 * 14 13 12 17 17 O 1.20827 * 120.00048 * 0.02562 * 16 14 13 18 18 O 1.34231 * 119.99728 * 180.02562 * 16 14 13 19 19 C 1.50700 * 109.47145 * 205.00122 * 14 13 12 20 20 C 1.38212 * 120.01236 * 339.99630 * 19 14 13 21 21 C 1.38228 * 120.02373 * 180.02562 * 20 19 14 22 22 C 1.38262 * 120.05084 * 0.02562 * 21 20 19 23 23 C 1.38176 * 120.02667 * 359.97438 * 22 21 20 24 24 C 1.38440 * 120.00942 * 160.02182 * 19 14 13 25 25 F 1.35097 * 120.02856 * 359.97438 * 24 19 14 26 26 C 1.53044 * 109.52936 * 61.37369 * 12 11 10 27 27 C 1.46920 * 120.62939 * 151.86395 * 9 7 2 28 28 H 0.97008 * 119.99741 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58424 * 113.84432 * 10 9 7 30 30 H 1.08993 * 109.70558 * 353.48901 * 10 9 7 31 31 H 1.08995 * 109.49183 * 185.41545 * 11 10 9 32 32 H 1.09000 * 109.49535 * 65.31741 * 11 10 9 33 33 H 1.08997 * 109.46194 * 301.36188 * 12 11 10 34 34 H 1.00903 * 110.99922 * 278.92473 * 13 12 11 35 35 H 0.96699 * 116.99660 * 180.02562 * 18 16 14 36 36 H 1.07993 * 119.98995 * 0.04511 * 20 19 14 37 37 H 1.08001 * 119.97458 * 180.02562 * 21 20 19 38 38 H 1.08002 * 119.98593 * 179.71853 * 22 21 20 39 39 H 1.08006 * 120.00894 * 179.97438 * 23 22 21 40 40 H 1.09005 * 109.49612 * 58.57487 * 26 12 11 41 41 H 1.08994 * 109.49998 * 178.67338 * 26 12 11 42 42 H 1.08997 * 109.58554 * 246.15480 * 27 9 7 43 43 H 1.08997 * 109.58906 * 6.43484 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0550 -1.2224 -0.2730 9 7 1.3700 -2.3626 0.3445 10 6 0.2262 -2.3408 1.2665 11 6 0.4983 -3.3200 2.4129 12 6 0.8132 -4.7014 1.8345 13 7 1.0421 -5.6508 2.9318 14 6 0.7617 -7.0278 2.5037 15 1 -0.0709 -7.0272 1.8001 16 6 1.9832 -7.6048 1.8359 17 8 2.9848 -6.9376 1.7280 18 8 1.9586 -8.8600 1.3608 19 6 0.4036 -7.8642 3.7050 20 6 0.7671 -7.4467 4.9714 21 6 0.4392 -8.2140 6.0734 22 6 -0.2523 -9.4001 5.9102 23 6 -0.6168 -9.8196 4.6452 24 6 -0.2893 -9.0514 3.5404 25 9 -0.6451 -9.4606 2.3031 26 6 2.0685 -4.6172 0.9630 27 6 1.8141 -3.6529 -0.1999 28 1 -0.4850 0.8401 0.0004 29 1 -0.6769 -2.6416 0.7356 30 1 0.0965 -1.3356 1.6676 31 1 -0.3821 -3.3852 3.0521 32 1 1.3481 -2.9681 2.9978 33 1 -0.0269 -5.0418 1.2291 34 1 1.9812 -5.5682 3.2915 35 1 2.7662 -9.1864 0.9409 36 1 1.3073 -6.5204 5.1001 37 1 0.7233 -7.8867 7.0627 38 1 -0.5040 -10.0010 6.7716 39 1 -1.1566 -10.7464 4.5180 40 1 2.9033 -4.2530 1.5619 41 1 2.3058 -5.6058 0.5704 42 1 1.0405 -4.0608 -0.8504 43 1 2.7332 -3.5126 -0.7688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:16 Heat of formation + Delta-G solvation = -76.199980 kcal Electronic energy + Delta-G solvation = -27890.342429 eV Core-core repulsion = 23850.776162 eV Total energy + Delta-G solvation = -4039.566267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.99749 -40.86585 -39.08927 -37.97889 -36.28604 -35.25753 -32.94642 -31.20707 -30.75270 -29.94053 -29.00222 -26.79855 -24.51532 -22.99401 -22.81615 -22.12653 -21.45716 -20.79759 -19.35400 -18.29560 -17.84109 -17.18632 -16.84956 -16.52299 -16.30490 -15.58046 -15.45893 -14.88590 -14.49908 -14.42662 -14.27139 -13.72617 -13.52275 -13.43499 -13.24413 -12.92507 -12.81853 -12.74478 -12.39532 -12.19635 -11.78516 -11.74879 -11.29262 -11.24886 -11.05735 -10.91157 -10.75583 -10.57836 -10.22374 -10.16405 -9.97864 -9.71874 -9.39051 -9.17731 -8.86362 -8.57103 -8.36718 -6.62523 -5.75305 -3.17281 0.86468 1.00750 2.03134 2.87809 3.39308 3.41269 3.47232 3.49873 3.92081 4.12066 4.35252 4.53175 4.60217 4.70622 4.94016 5.01525 5.15976 5.20534 5.36205 5.44383 5.57397 5.60229 5.66296 5.83315 5.89054 5.92589 6.06770 6.14609 6.18859 6.29756 6.39429 6.47242 6.59106 6.64354 6.65552 6.78700 6.86081 7.00791 7.11787 7.28298 7.46005 7.70388 7.75086 7.83881 8.49368 9.25624 9.89012 10.46044 11.33255 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.003096 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.124130 B = 9043.132629 C = 9513.672965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.123 4.123 12 C 0.090 3.910 13 N -0.652 5.652 14 C 0.141 3.859 15 H 0.125 0.875 16 C 0.450 3.550 17 O -0.495 6.495 18 O -0.511 6.511 19 C -0.114 4.114 20 C -0.058 4.058 21 C -0.136 4.136 22 C -0.088 4.088 23 C -0.161 4.161 24 C 0.119 3.881 25 F -0.130 7.130 26 C -0.160 4.160 27 C 0.148 3.852 28 H 0.253 0.747 29 H 0.017 0.983 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.353 0.647 35 H 0.405 0.595 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.013 0.987 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.336 -21.316 11.045 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.045 3.955 11 C -0.163 4.163 12 C -0.019 4.019 13 N -0.283 5.283 14 C 0.028 3.972 15 H 0.143 0.857 16 C 0.289 3.711 17 O -0.383 6.383 18 O -0.321 6.321 19 C -0.116 4.116 20 C -0.076 4.076 21 C -0.154 4.154 22 C -0.106 4.106 23 C -0.180 4.180 24 C 0.099 3.901 25 F -0.109 7.109 26 C -0.200 4.200 27 C 0.021 3.979 28 H 0.063 0.937 29 H 0.035 0.965 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.174 0.826 35 H 0.264 0.736 36 H 0.159 0.841 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.031 0.969 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.144 -20.739 11.414 23.700 hybrid contribution 1.635 0.370 -1.147 2.031 sum 0.491 -20.369 10.267 22.815 Atomic orbital electron populations 1.70043 1.05229 1.25311 1.54201 1.25039 0.95290 0.98364 1.01028 0.86236 0.79381 0.84013 0.77240 1.20305 1.21787 1.21547 1.19232 0.92543 0.84845 1.41335 0.91786 1.44088 1.35887 1.01505 1.50050 1.20786 0.88560 0.98201 0.87926 1.22180 1.00621 0.93588 0.99944 1.21775 0.97507 0.92786 0.89817 1.61182 1.33503 0.99779 1.33876 1.20132 0.93971 0.89324 0.93786 0.85715 1.24708 0.91131 0.79460 0.75767 1.90754 1.34024 1.59566 1.53910 1.84620 1.45557 1.31158 1.70736 1.19471 1.02253 0.94533 0.95310 1.20996 0.97004 0.99226 0.90404 1.21240 0.99857 0.95158 0.99194 1.21048 0.96847 0.96311 0.96443 1.21094 1.03952 1.01154 0.91822 1.17502 0.98457 0.93939 0.80210 1.91526 1.89629 1.89983 1.39719 1.22890 0.97589 0.99938 0.99571 1.20866 0.97353 0.86922 0.92784 0.93732 0.96516 0.89258 0.92552 0.92605 0.91121 0.82607 0.73640 0.84066 0.85186 0.85127 0.84716 0.91972 0.92163 0.96905 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 11.19 55.49 0.62 -25.84 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.25 -7.01 9.58 -15.05 -0.14 -7.15 16 8 H 0.06 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -15.17 2.99 -172.32 -0.52 -15.69 16 10 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 11 C -0.12 -2.37 5.69 -26.61 -0.15 -2.52 16 12 C 0.09 1.52 2.43 -67.67 -0.16 1.36 16 13 N -0.65 -9.09 4.86 -102.13 -0.50 -9.58 16 14 C 0.14 1.78 2.44 -70.02 -0.17 1.61 16 15 H 0.13 1.62 7.23 -51.92 -0.38 1.24 16 16 C 0.45 5.80 6.90 36.01 0.25 6.05 16 17 O -0.50 -7.56 13.15 -18.75 -0.25 -7.80 16 18 O -0.51 -5.38 12.39 -39.26 -0.49 -5.86 16 19 C -0.11 -1.30 5.06 -104.56 -0.53 -1.83 16 20 C -0.06 -0.59 9.33 -39.59 -0.37 -0.96 16 21 C -0.14 -1.12 10.04 -39.58 -0.40 -1.52 16 22 C -0.09 -0.67 10.04 -39.60 -0.40 -1.07 16 23 C -0.16 -1.42 10.03 -39.52 -0.40 -1.82 16 24 C 0.12 1.30 6.98 -39.42 -0.27 1.03 16 25 F -0.13 -1.56 15.96 2.25 0.04 -1.53 16 26 C -0.16 -2.96 4.23 -26.61 -0.11 -3.08 16 27 C 0.15 3.26 6.52 -3.71 -0.02 3.23 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.22 7.43 -51.93 -0.39 0.84 16 34 H 0.35 4.97 7.06 -39.29 -0.28 4.69 16 35 H 0.41 2.61 9.10 45.56 0.41 3.02 16 36 H 0.14 1.40 6.84 -52.49 -0.36 1.04 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 39 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.07 4.96 -51.93 -0.26 0.81 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 348.61 15.07 5.25 5.25 Total: -1.00 -31.95 348.61 -8.75 -40.70 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -4.90 Total: 6.01 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.99 Total: -2.61 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.39 Total: -51.11 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.73 Total: -13.67 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.95 -8.75 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.501 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds