Wall clock time and date at job start Tue Mar 31 2020 13:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00269 * 2 1 4 4 H 1.48506 * 109.47025 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46935 * 299.99949 * 3 2 1 6 6 H 1.48502 * 109.47195 * 60.00092 * 3 2 1 7 7 C 1.38816 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00065 * 163.06049 * 7 2 1 9 9 N 1.36947 * 119.99941 * 343.06035 * 7 2 1 10 10 C 1.46931 * 120.62735 * 331.84180 * 9 7 2 11 11 C 1.53195 * 108.77266 * 233.62890 * 10 9 7 12 12 C 1.53039 * 109.31227 * 305.36689 * 11 10 9 13 13 N 1.46899 * 109.45896 * 181.38699 * 12 11 10 14 14 C 1.46898 * 111.00232 * 154.97498 * 13 12 11 15 15 H 1.09008 * 109.46892 * 325.00041 * 14 13 12 16 16 C 1.50703 * 109.47240 * 84.99490 * 14 13 12 17 17 O 1.20827 * 120.00048 * 0.02562 * 16 14 13 18 18 O 1.34231 * 119.99728 * 180.02562 * 16 14 13 19 19 C 1.50700 * 109.47145 * 205.00122 * 14 13 12 20 20 C 1.38212 * 120.01236 * 339.99630 * 19 14 13 21 21 C 1.38228 * 120.02373 * 180.02562 * 20 19 14 22 22 C 1.38262 * 120.05084 * 0.02562 * 21 20 19 23 23 C 1.38176 * 120.02667 * 359.97438 * 22 21 20 24 24 C 1.38440 * 120.00942 * 160.02182 * 19 14 13 25 25 F 1.35097 * 120.02856 * 359.97438 * 24 19 14 26 26 C 1.53044 * 109.52936 * 61.37369 * 12 11 10 27 27 C 1.46920 * 120.62939 * 151.86395 * 9 7 2 28 28 H 0.97008 * 119.99741 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58424 * 113.84432 * 10 9 7 30 30 H 1.08993 * 109.70558 * 353.48901 * 10 9 7 31 31 H 1.08995 * 109.49183 * 185.41545 * 11 10 9 32 32 H 1.09000 * 109.49535 * 65.31741 * 11 10 9 33 33 H 1.08997 * 109.46194 * 301.36188 * 12 11 10 34 34 H 1.00903 * 110.99922 * 278.92473 * 13 12 11 35 35 H 0.96699 * 116.99660 * 180.02562 * 18 16 14 36 36 H 1.07993 * 119.98995 * 0.04511 * 20 19 14 37 37 H 1.08001 * 119.97458 * 180.02562 * 21 20 19 38 38 H 1.08002 * 119.98593 * 179.71853 * 22 21 20 39 39 H 1.08006 * 120.00894 * 179.97438 * 23 22 21 40 40 H 1.09005 * 109.49612 * 58.57487 * 26 12 11 41 41 H 1.08994 * 109.49998 * 178.67338 * 26 12 11 42 42 H 1.08997 * 109.58554 * 246.15480 * 27 9 7 43 43 H 1.08997 * 109.58906 * 6.43484 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0550 -1.2224 -0.2730 9 7 1.3700 -2.3626 0.3445 10 6 0.2262 -2.3408 1.2665 11 6 0.4983 -3.3200 2.4129 12 6 0.8132 -4.7014 1.8345 13 7 1.0421 -5.6508 2.9318 14 6 0.7617 -7.0278 2.5037 15 1 -0.0709 -7.0272 1.8001 16 6 1.9832 -7.6048 1.8359 17 8 2.9848 -6.9376 1.7280 18 8 1.9586 -8.8600 1.3608 19 6 0.4036 -7.8642 3.7050 20 6 0.7671 -7.4467 4.9714 21 6 0.4392 -8.2140 6.0734 22 6 -0.2523 -9.4001 5.9102 23 6 -0.6168 -9.8196 4.6452 24 6 -0.2893 -9.0514 3.5404 25 9 -0.6451 -9.4606 2.3031 26 6 2.0685 -4.6172 0.9630 27 6 1.8141 -3.6529 -0.1999 28 1 -0.4850 0.8401 0.0004 29 1 -0.6769 -2.6416 0.7356 30 1 0.0965 -1.3356 1.6676 31 1 -0.3821 -3.3852 3.0521 32 1 1.3481 -2.9681 2.9978 33 1 -0.0269 -5.0418 1.2291 34 1 1.9812 -5.5682 3.2915 35 1 2.7662 -9.1864 0.9409 36 1 1.3073 -6.5204 5.1001 37 1 0.7233 -7.8867 7.0627 38 1 -0.5040 -10.0010 6.7716 39 1 -1.1566 -10.7464 4.5180 40 1 2.9033 -4.2530 1.5619 41 1 2.3058 -5.6058 0.5704 42 1 1.0405 -4.0608 -0.8504 43 1 2.7332 -3.5126 -0.7688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:15 Heat of formation + Delta-G solvation = -96.480645 kcal Electronic energy + Delta-G solvation = -27891.221864 eV Core-core repulsion = 23850.776162 eV Total energy + Delta-G solvation = -4040.445702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.81781 -41.89658 -39.85513 -39.45311 -37.42685 -36.56190 -34.53434 -32.76068 -31.61651 -31.42991 -30.47338 -27.99206 -26.31872 -23.89756 -23.81092 -23.73202 -22.90303 -21.78188 -21.00384 -19.26571 -18.97032 -18.51555 -18.01330 -17.60029 -17.19529 -16.86307 -16.42730 -16.31116 -15.92321 -15.56752 -15.34560 -15.22557 -14.98919 -14.72062 -14.61028 -14.21030 -14.03313 -13.85429 -13.68005 -13.26534 -13.09661 -13.05203 -12.75877 -12.57198 -12.49167 -12.37865 -12.12326 -12.03220 -11.96864 -11.89466 -11.78085 -11.42931 -11.08133 -10.57059 -9.89119 -9.78778 -9.56707 -8.69656 -7.88794 -5.34477 0.14794 0.32065 1.02569 1.45239 1.46801 1.57849 1.99379 2.50268 2.65699 2.87202 3.26523 3.36411 3.47649 3.67560 3.77103 3.94457 4.00845 4.08296 4.15523 4.28871 4.37354 4.46051 4.49274 4.52277 4.67108 4.83588 4.88760 4.93377 4.93855 5.11747 5.17382 5.21010 5.24581 5.30921 5.42310 5.49310 5.50528 5.53187 5.63671 5.69787 5.83352 5.98877 6.13033 6.38329 6.86674 7.13862 7.84091 8.36280 9.17686 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.003096 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.124130 B = 9043.132629 C = 9513.672965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.266 4.266 8 H 0.061 0.939 9 N -0.610 5.610 10 C 0.178 3.822 11 C -0.108 4.108 12 C 0.101 3.899 13 N -0.640 5.640 14 C 0.141 3.859 15 H 0.121 0.879 16 C 0.456 3.544 17 O -0.524 6.524 18 O -0.505 6.505 19 C -0.129 4.129 20 C -0.072 4.072 21 C -0.133 4.133 22 C -0.081 4.081 23 C -0.162 4.162 24 C 0.098 3.902 25 F -0.142 7.142 26 C -0.141 4.141 27 C 0.144 3.856 28 H 0.251 0.749 29 H -0.002 1.002 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.354 0.646 35 H 0.424 0.576 36 H 0.139 0.861 37 H 0.155 0.845 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.011 0.989 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.044 -23.119 12.917 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.244 4.244 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.396 4.396 8 H 0.079 0.921 9 N -0.334 5.334 10 C 0.052 3.948 11 C -0.148 4.148 12 C -0.008 4.008 13 N -0.271 5.271 14 C 0.028 3.972 15 H 0.139 0.861 16 C 0.297 3.703 17 O -0.414 6.414 18 O -0.317 6.317 19 C -0.130 4.130 20 C -0.090 4.090 21 C -0.151 4.151 22 C -0.098 4.098 23 C -0.180 4.180 24 C 0.078 3.922 25 F -0.121 7.121 26 C -0.181 4.181 27 C 0.018 3.982 28 H 0.060 0.940 29 H 0.016 0.984 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.176 0.824 35 H 0.285 0.715 36 H 0.157 0.843 37 H 0.173 0.827 38 H 0.182 0.818 39 H 0.172 0.828 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.029 0.971 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.839 -22.598 13.286 26.228 hybrid contribution 1.530 0.793 -1.721 2.436 sum 0.691 -21.804 11.565 24.691 Atomic orbital electron populations 1.70188 1.06587 1.25860 1.55232 1.25796 0.96101 1.01432 1.01084 0.85203 0.78473 0.79780 0.76945 1.19399 1.21793 1.21296 1.19510 0.92688 0.86154 1.41226 0.92127 1.44337 1.36087 1.02098 1.50846 1.20605 0.87580 0.97747 0.88867 1.21913 1.01165 0.93625 0.98047 1.21498 0.96623 0.92452 0.90238 1.61037 1.33632 1.00240 1.32216 1.20094 0.93721 0.88619 0.94731 0.86142 1.24655 0.90623 0.79813 0.75167 1.90742 1.34991 1.60433 1.55191 1.84575 1.46833 1.29940 1.70354 1.19388 1.03677 0.94911 0.95058 1.21109 0.97541 0.99699 0.90627 1.21573 0.98930 0.94933 0.99660 1.21462 0.95319 0.96077 0.96985 1.21410 1.03501 1.01499 0.91619 1.17750 0.99470 0.94482 0.80472 1.91492 1.89885 1.90117 1.40556 1.22696 0.97914 0.99297 0.98195 1.20990 0.96799 0.86321 0.94101 0.93989 0.98440 0.92471 0.90786 0.93077 0.91137 0.82420 0.71454 0.84290 0.82736 0.81817 0.82833 0.93138 0.90857 0.97092 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 11.19 21.65 0.24 -55.81 16 2 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 3 Si 0.97 45.85 29.59 68.60 2.03 47.88 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 7 C -0.27 -15.21 9.58 84.03 0.81 -14.40 16 8 H 0.06 3.44 7.88 -2.91 -0.02 3.41 16 9 N -0.61 -32.01 2.99 -699.10 -2.09 -34.10 16 10 C 0.18 8.81 5.30 86.36 0.46 9.26 16 11 C -0.11 -4.14 5.69 30.67 0.17 -3.97 16 12 C 0.10 3.40 2.43 44.94 0.11 3.51 16 13 N -0.64 -17.27 4.86 -477.03 -2.32 -19.59 16 14 C 0.14 3.45 2.44 43.42 0.11 3.55 16 15 H 0.12 3.05 7.23 -2.38 -0.02 3.03 16 16 C 0.46 11.29 6.90 71.24 0.49 11.78 16 17 O -0.52 -15.51 13.15 21.96 0.29 -15.22 16 18 O -0.51 -9.91 12.39 -51.43 -0.64 -10.55 16 19 C -0.13 -2.76 5.06 -19.82 -0.10 -2.86 16 20 C -0.07 -1.32 9.33 22.26 0.21 -1.11 16 21 C -0.13 -1.77 10.04 22.27 0.22 -1.54 16 22 C -0.08 -0.92 10.04 22.26 0.22 -0.70 16 23 C -0.16 -2.40 10.03 22.31 0.22 -2.18 16 24 C 0.10 2.00 6.98 22.38 0.16 2.15 16 25 F -0.14 -3.27 15.96 44.97 0.72 -2.55 16 26 C -0.14 -5.21 4.23 30.67 0.13 -5.08 16 27 C 0.14 6.45 6.52 86.36 0.56 7.01 16 28 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 29 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.06 3.18 6.06 -2.39 -0.01 3.17 16 31 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 2.41 7.43 -2.39 -0.02 2.39 16 34 H 0.35 9.65 7.06 -89.69 -0.63 9.02 16 35 H 0.42 4.73 9.10 -74.06 -0.67 4.05 16 36 H 0.14 2.55 6.84 -2.91 -0.02 2.53 16 37 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 38 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 39 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.07 2.56 4.96 -2.39 -0.01 2.55 16 42 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 Total: -1.00 -69.89 348.61 2.17 -67.71 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -0.25 Total: 19.15 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 4.19 Total: 3.08 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -4.17 Total: -109.51 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.35 Total: -25.77 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.72 Total: -2.55 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -69.89 2.17 -67.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.766 kcal (2) G-P(sol) polarization free energy of solvation -69.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds