Wall clock time and date at job start Tue Mar 31 2020 13:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86802 * 119.99902 * 2 1 4 4 H 1.48504 * 109.46908 * 269.99644 * 3 2 1 5 5 H 1.48498 * 109.47220 * 29.99805 * 3 2 1 6 6 H 1.48502 * 109.47188 * 149.99985 * 3 2 1 7 7 C 1.39952 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00008 * 170.03192 * 7 2 1 9 9 C 1.41397 * 119.99411 * 350.03169 * 7 2 1 10 10 C 1.40728 * 120.24585 * 330.29739 * 9 7 2 11 11 C 1.37601 * 119.74504 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24722 * 359.73067 * 11 10 9 13 13 C 1.38619 * 120.49908 * 0.54915 * 12 11 10 14 14 C 1.37630 * 120.24910 * 359.45115 * 13 12 11 15 15 C 1.50700 * 120.12890 * 180.29609 * 14 13 12 16 16 C 1.50707 * 109.47066 * 264.99639 * 15 14 13 17 17 O 1.21275 * 119.99728 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99871 * 179.97438 * 16 15 14 19 19 C 1.39401 * 119.99503 * 174.97538 * 18 16 15 20 20 C 1.39048 * 119.68195 * 185.31873 * 19 18 16 21 21 C 1.38285 * 118.93006 * 179.97438 * 20 19 18 22 22 C 1.38939 * 118.65986 * 359.97438 * 21 20 19 23 23 C 1.38074 * 119.46692 * 0.02562 * 22 21 20 24 24 N 1.32170 * 119.69051 * 5.04412 * 19 18 16 25 25 C 1.51495 * 109.60687 * 179.97438 * 23 22 21 26 26 C 1.54335 * 105.20804 * 17.21994 * 25 23 22 27 27 C 1.51264 * 130.57858 * 180.02562 * 22 21 20 28 28 H 0.96996 * 120.00210 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.12886 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.87860 * 179.97438 * 11 10 9 31 31 H 1.07993 * 119.75035 * 180.29832 * 12 11 10 32 32 H 1.08001 * 119.87088 * 179.72344 * 13 12 11 33 33 H 1.08997 * 109.47350 * 24.99806 * 15 14 13 34 34 H 1.08999 * 109.47395 * 145.00094 * 15 14 13 35 35 H 0.97000 * 119.99844 * 354.96972 * 18 16 15 36 36 H 1.07998 * 120.53239 * 0.02562 * 20 19 18 37 37 H 1.08004 * 120.67325 * 180.02562 * 21 20 19 38 38 H 1.08997 * 110.29521 * 136.15727 * 25 23 22 39 39 H 1.09003 * 110.29463 * 258.19012 * 25 23 22 40 40 H 1.09006 * 110.82546 * 91.86969 * 26 25 23 41 41 H 1.08996 * 110.82637 * 215.22988 * 26 25 23 42 42 H 1.09005 * 110.30930 * 281.74966 * 27 22 21 43 43 H 1.08992 * 110.31554 * 43.92516 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4402 0.7000 7 6 2.0080 -1.2120 0.0005 8 1 3.0758 -1.2190 -0.1614 9 6 1.3170 -2.4271 0.2131 10 6 0.1533 -2.4519 1.0040 11 6 -0.5108 -3.6402 1.2045 12 6 -0.0405 -4.8094 0.6260 13 6 1.1079 -4.7978 -0.1502 14 6 1.7882 -3.6207 -0.3642 15 6 3.0327 -3.6100 -1.2140 16 6 4.2465 -3.7304 -0.3288 17 8 4.1139 -3.8169 0.8736 18 7 5.4792 -3.7431 -0.8736 19 6 6.6046 -3.7487 -0.0510 20 6 7.8711 -3.6497 -0.6162 21 6 8.9767 -3.6564 0.2144 22 6 8.7794 -3.7614 1.5857 23 6 7.4943 -3.8564 2.0816 24 7 6.4574 -3.8427 1.2592 25 6 7.5389 -3.9605 3.5923 26 6 8.9506 -3.4798 3.9898 27 6 9.7756 -3.7941 2.7235 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2172 -1.5416 1.4520 30 1 -1.4038 -3.6618 1.8114 31 1 -0.5707 -5.7367 0.7847 32 1 1.4676 -5.7151 -0.5923 33 1 3.0053 -4.4491 -1.9091 34 1 3.0826 -2.6760 -1.7737 35 1 5.5832 -3.7483 -1.8380 36 1 7.9894 -3.5682 -1.6866 37 1 9.9735 -3.5806 -0.1945 38 1 6.7807 -3.3166 4.0382 39 1 7.3877 -4.9938 3.9048 40 1 8.9514 -2.4098 4.1976 41 1 9.3234 -4.0397 4.8475 42 1 10.2280 -4.7827 2.8020 43 1 10.5445 -3.0360 2.5751 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837034016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:15 Heat of formation + Delta-G solvation = 24.371865 kcal Electronic energy + Delta-G solvation = -26212.317972 eV Core-core repulsion = 22607.882052 eV Total energy + Delta-G solvation = -3604.435920 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.82316 -39.16901 -37.45139 -36.22244 -33.71291 -33.55481 -32.54211 -31.63773 -29.41981 -28.70633 -27.75247 -26.62665 -24.99936 -23.56515 -21.83835 -20.89999 -20.87280 -20.53213 -19.30579 -17.41482 -17.04290 -16.76437 -15.86491 -15.73270 -15.40172 -14.97396 -14.82684 -14.49545 -13.88636 -13.74586 -13.48688 -13.20806 -13.01961 -12.91106 -12.83065 -12.54108 -12.26923 -11.79897 -11.70646 -11.53047 -11.36324 -11.26517 -11.10634 -10.97693 -10.95959 -10.65300 -10.35263 -10.05906 -9.59930 -9.57481 -9.46417 -9.33610 -9.16766 -8.56455 -7.88498 -7.28389 -7.21278 -6.65308 -4.32655 1.19579 1.43521 2.79177 2.94917 3.09131 3.15350 3.28338 3.29864 3.30808 3.98248 4.02813 4.12846 4.43547 4.72060 4.79970 4.88970 4.98817 5.02505 5.17476 5.41279 5.47774 5.59834 5.63757 5.71803 5.78133 5.85341 5.93649 6.01238 6.03762 6.05825 6.15305 6.26991 6.30354 6.42115 6.47505 6.53585 6.81502 6.99297 7.14087 7.32605 7.45404 7.53015 7.70277 7.94578 8.10994 8.15466 8.34306 8.35556 8.69034 8.85684 8.96223 9.04693 10.28547 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.003840 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.851520 B = 7289.141750 C = 8105.333485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.076 3.924 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.457 4.457 8 H 0.072 0.928 9 C 0.130 3.870 10 C -0.152 4.152 11 C -0.109 4.109 12 C -0.235 4.235 13 C -0.083 4.083 14 C -0.180 4.180 15 C -0.068 4.068 16 C 0.499 3.501 17 O -0.448 6.448 18 N -0.672 5.672 19 C 0.379 3.621 20 C -0.219 4.219 21 C -0.037 4.037 22 C -0.200 4.200 23 C 0.157 3.843 24 N -0.470 5.470 25 C -0.073 4.073 26 C -0.118 4.118 27 C -0.069 4.069 28 H 0.278 0.722 29 H 0.119 0.881 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.413 0.587 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.135 -4.859 -0.763 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.487 4.487 8 H 0.090 0.910 9 C 0.127 3.873 10 C -0.171 4.171 11 C -0.127 4.127 12 C -0.254 4.254 13 C -0.101 4.101 14 C -0.181 4.181 15 C -0.108 4.108 16 C 0.285 3.715 17 O -0.313 6.313 18 N -0.320 5.320 19 C 0.146 3.854 20 C -0.243 4.243 21 C -0.063 4.063 22 C -0.204 4.204 23 C 0.018 3.982 24 N -0.184 5.184 25 C -0.111 4.111 26 C -0.156 4.156 27 C -0.107 4.107 28 H 0.089 0.911 29 H 0.137 0.863 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.249 0.751 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.815 -4.788 0.432 16.529 hybrid contribution 1.154 0.878 -1.083 1.810 sum 16.969 -3.910 -0.651 17.426 Atomic orbital electron populations 1.69785 1.07297 1.28839 1.37014 1.25840 0.94764 1.00962 0.92494 0.86388 0.80653 0.81071 0.79077 1.19554 1.20098 1.18713 1.19449 0.95280 0.90376 1.43613 0.90989 1.17340 0.91094 0.91265 0.87571 1.21343 0.98332 0.96431 1.01041 1.20703 0.98595 0.93670 0.99769 1.20328 1.00481 0.96728 1.07847 1.20303 0.95655 0.95412 0.98722 1.19070 0.98206 0.94731 1.06138 1.20294 0.90371 1.03183 0.96953 1.21612 0.83272 0.76151 0.90459 1.90790 1.84726 1.41010 1.14793 1.44096 1.04635 1.73720 1.09504 1.18378 0.86197 0.92827 0.87948 1.21355 0.91535 1.10494 1.00916 1.20705 0.98531 0.95327 0.91726 1.21309 0.97137 1.07250 0.94685 1.21704 0.87638 0.92614 0.96272 1.66794 1.34239 1.15324 1.02079 1.21007 0.98116 1.02988 0.88944 1.22309 0.94137 1.01875 0.97318 1.20827 0.96352 1.01908 0.91568 0.91081 0.86338 0.89530 0.89616 0.89722 0.90397 0.88284 0.75107 0.84697 0.85126 0.89456 0.89336 0.90757 0.90165 0.90516 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.09 10.86 55.55 0.60 -20.48 16 2 C 0.08 1.94 5.26 -17.34 -0.09 1.85 16 3 Si 0.90 19.40 29.57 -169.99 -5.03 14.38 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.46 -12.28 8.06 -37.74 -0.30 -12.58 16 8 H 0.07 1.91 6.79 -52.49 -0.36 1.56 16 9 C 0.13 3.52 5.54 -106.82 -0.59 2.92 16 10 C -0.15 -4.13 8.65 -38.87 -0.34 -4.47 16 11 C -0.11 -2.70 10.02 -39.66 -0.40 -3.09 16 12 C -0.23 -5.53 10.05 -39.29 -0.39 -5.93 16 13 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 14 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 15 C -0.07 -1.34 5.19 -29.03 -0.15 -1.49 16 16 C 0.50 10.16 7.40 -10.98 -0.08 10.08 16 17 O -0.45 -11.27 14.30 5.56 0.08 -11.19 16 18 N -0.67 -10.69 5.39 -11.46 -0.06 -10.75 16 19 C 0.38 6.31 7.42 -154.86 -1.15 5.16 16 20 C -0.22 -2.75 9.95 -39.26 -0.39 -3.14 16 21 C -0.04 -0.43 10.16 -39.30 -0.40 -0.82 16 22 C -0.20 -2.53 6.16 -104.15 -0.64 -3.17 16 23 C 0.16 2.48 7.31 -82.04 -0.60 1.88 16 24 N -0.47 -9.07 7.88 -8.30 -0.07 -9.14 16 25 C -0.07 -0.91 6.77 -26.79 -0.18 -1.10 16 26 C -0.12 -1.07 7.08 -25.31 -0.18 -1.25 16 27 C -0.07 -0.63 6.77 -26.89 -0.18 -0.81 16 28 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 29 H 0.12 3.31 6.27 -52.48 -0.33 2.99 16 30 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 31 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 34 H 0.10 1.89 7.12 -51.93 -0.37 1.52 16 35 H 0.41 4.62 8.70 -40.82 -0.36 4.27 16 36 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 359.59 15.07 5.42 5.42 Total: -1.00 -34.11 359.59 -11.58 -45.69 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -5.61 Total: 9.19 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -6.91 Total: -23.11 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.48 Total: -40.38 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.11 -11.58 -45.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837034016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.061 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds