Wall clock time and date at job start Tue Mar 31 2020 13:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.38545 * 119.79877 * 77.80307 * 3 2 1 5 5 C 1.40237 * 119.54096 * 179.97438 * 4 3 2 6 6 C 1.40683 * 121.02392 * 180.02562 * 5 4 3 7 7 C 1.36068 * 119.68638 * 180.02562 * 6 5 4 8 8 C 1.39393 * 120.97287 * 359.94827 * 7 6 5 9 9 C 1.36100 * 121.01967 * 0.02562 * 8 7 6 10 10 C 1.40590 * 119.72302 * 0.02562 * 9 8 7 11 11 C 1.40460 * 120.97837 * 179.97438 * 10 9 8 12 12 C 1.36488 * 119.98982 * 180.30088 * 11 10 9 13 13 N 1.39536 * 119.66667 * 179.72790 * 12 11 10 14 14 C 1.34773 * 120.00097 * 24.99661 * 13 12 11 15 15 O 1.21288 * 120.00315 * 5.54457 * 14 13 12 16 16 C 1.50706 * 119.99762 * 185.54121 * 14 13 12 17 17 C 1.53008 * 109.46661 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46538 * 180.02562 * 17 16 14 19 19 C 1.53008 * 109.46557 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.46680 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99987 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99469 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99685 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00412 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47199 * 90.00047 * 24 22 20 26 26 H 1.48503 * 109.46931 * 210.00253 * 24 22 20 27 27 H 1.48501 * 109.47044 * 330.00176 * 24 22 20 28 28 H 1.07997 * 120.23038 * 359.97438 * 4 3 2 29 29 H 1.07998 * 120.15653 * 0.04106 * 6 5 4 30 30 H 1.08001 * 119.51519 * 179.97438 * 7 6 5 31 31 H 1.08001 * 119.48877 * 180.02562 * 8 7 6 32 32 H 1.07996 * 120.14126 * 180.02562 * 9 8 7 33 33 H 1.07997 * 120.00066 * 0.02721 * 11 10 9 34 34 H 0.96998 * 120.00042 * 205.01029 * 13 12 11 35 35 H 1.08998 * 109.47053 * 299.99714 * 16 14 13 36 36 H 1.08994 * 109.47228 * 60.00714 * 16 14 13 37 37 H 1.09000 * 109.47161 * 299.99271 * 17 16 14 38 38 H 1.08994 * 109.47222 * 60.00091 * 17 16 14 39 39 H 1.08990 * 109.47306 * 299.99309 * 18 17 16 40 40 H 1.08994 * 109.47290 * 60.00132 * 18 17 16 41 41 H 1.08992 * 109.47585 * 299.99777 * 19 18 17 42 42 H 1.09002 * 109.46698 * 60.00534 * 19 18 17 43 43 H 0.97003 * 119.99946 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2565 -0.2531 -1.1751 5 6 4.6589 -0.2506 -1.1691 6 6 5.3895 -0.5037 -2.3444 7 6 6.7497 -0.4951 -2.3073 8 6 7.4333 -0.2377 -1.1202 9 6 6.7609 0.0121 0.0365 10 6 5.3550 0.0110 0.0396 11 6 4.6345 0.2649 1.2182 12 6 3.2698 0.2528 1.1995 13 7 2.5608 0.5003 2.3756 14 6 3.1266 1.2198 3.3649 15 8 4.2105 1.7368 3.1952 16 6 2.4123 1.3819 4.6820 17 6 3.2644 2.2369 5.6223 18 6 2.5395 2.4009 6.9597 19 6 3.3919 3.2553 7.9002 20 6 2.6776 3.4174 9.2173 21 1 1.7122 2.9575 9.3682 22 6 3.2562 4.1539 10.2291 23 7 2.6332 4.2949 11.3787 24 14 4.9257 4.9500 9.9677 25 1 4.7416 6.3164 9.4159 26 1 5.6433 5.0327 11.2652 27 1 5.7195 4.1339 9.0142 28 1 2.7171 -0.4514 -2.0895 29 1 4.8732 -0.7037 -3.2716 30 1 7.3078 -0.6902 -3.2111 31 1 8.5134 -0.2363 -1.1182 32 1 7.3050 0.2102 0.9481 33 1 5.1603 0.4653 2.1400 34 1 1.6607 0.1544 2.4812 35 1 1.4522 1.8707 4.5169 36 1 2.2488 0.4017 5.1297 37 1 4.2247 1.7484 5.7875 38 1 3.4276 3.2170 5.1744 39 1 1.5791 2.8891 6.7949 40 1 2.3767 1.4205 7.4073 41 1 4.3521 2.7668 8.0649 42 1 3.5549 4.2358 7.4526 43 1 3.0401 4.8134 12.0905 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839438558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:23 Heat of formation + Delta-G solvation = 21.794609 kcal Electronic energy + Delta-G solvation = -24644.419874 eV Core-core repulsion = 21039.872196 eV Total energy + Delta-G solvation = -3604.547678 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39255 -39.96552 -37.89336 -36.36386 -35.14947 -34.64008 -33.07860 -32.58971 -30.84218 -30.33505 -29.00136 -26.13635 -24.95426 -23.74429 -22.52533 -22.00225 -20.57131 -20.10100 -19.76176 -18.60379 -17.50408 -16.76520 -16.55685 -16.09158 -15.76939 -15.65969 -14.87212 -14.76453 -14.51607 -14.21100 -14.17211 -13.91851 -13.70227 -13.61490 -13.57619 -13.13058 -12.71474 -12.66897 -12.59608 -12.20370 -11.91189 -11.80552 -11.76291 -11.43369 -11.17399 -10.80384 -10.70360 -10.59807 -10.22602 -9.97359 -9.84518 -9.68714 -9.49499 -9.14657 -8.80035 -8.51059 -8.07837 -6.01998 -3.99772 -0.14326 0.34977 1.51339 1.98331 2.17558 2.45694 2.62682 2.98766 3.33840 3.36010 3.40964 3.46044 3.70053 4.11936 4.38415 4.47090 4.48294 4.48733 4.57831 4.76767 4.81256 4.91669 5.07822 5.15374 5.21100 5.31739 5.32578 5.43633 5.57145 5.61784 5.68247 5.75400 5.92912 5.94274 6.05489 6.07407 6.14509 6.33278 6.41654 6.52033 6.61323 6.74288 6.90097 6.95240 7.04817 7.34421 7.47282 7.78976 7.83077 8.56359 9.02839 9.61051 11.11441 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016962 B = 0.002238 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.358002 B =12509.733558 C =14023.892009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.249 3.751 3 C -0.051 4.051 4 C -0.023 4.023 5 C -0.078 4.078 6 C -0.092 4.092 7 C -0.124 4.124 8 C -0.101 4.101 9 C -0.109 4.109 10 C -0.007 4.007 11 C -0.124 4.124 12 C 0.188 3.812 13 N -0.678 5.678 14 C 0.515 3.485 15 O -0.507 6.507 16 C -0.139 4.139 17 C -0.107 4.107 18 C -0.103 4.103 19 C -0.015 4.015 20 C -0.520 4.520 21 H 0.071 0.929 22 C 0.064 3.936 23 N -0.905 5.905 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.264 1.264 28 H 0.143 0.857 29 H 0.130 0.870 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.163 0.837 34 H 0.412 0.588 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.016 0.984 42 H 0.011 0.989 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.474 -13.306 -31.117 34.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.066 4.066 3 C -0.057 4.057 4 C -0.045 4.045 5 C -0.079 4.079 6 C -0.111 4.111 7 C -0.142 4.142 8 C -0.119 4.119 9 C -0.127 4.127 10 C -0.008 4.008 11 C -0.144 4.144 12 C 0.090 3.910 13 N -0.322 5.322 14 C 0.305 3.695 15 O -0.381 6.381 16 C -0.179 4.179 17 C -0.145 4.145 18 C -0.141 4.141 19 C -0.052 4.052 20 C -0.558 4.558 21 H 0.089 0.911 22 C -0.137 4.137 23 N -0.544 5.544 24 Si 0.708 3.292 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.189 1.189 28 H 0.161 0.839 29 H 0.148 0.852 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.180 0.820 34 H 0.248 0.752 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.468 -12.823 -30.933 33.929 hybrid contribution 0.703 0.331 0.003 0.778 sum 6.171 -12.492 -30.929 33.923 Atomic orbital electron populations 1.81317 1.11677 1.08873 1.06399 1.25585 0.92510 0.93938 0.94581 1.15718 0.84279 1.11727 0.93974 1.21219 0.92915 0.94194 0.96164 1.17920 0.92534 1.03418 0.94004 1.21031 0.94385 0.98793 0.96843 1.20878 0.94450 1.00554 0.98311 1.20977 1.00429 0.97943 0.92587 1.21128 0.92612 0.99815 0.99131 1.18087 0.93881 0.96591 0.92276 1.21258 0.91857 1.01637 0.99689 1.17185 0.91294 0.97944 0.84591 1.43787 1.19351 1.53959 1.15124 1.21385 0.86374 0.76160 0.85611 1.90673 1.21032 1.45361 1.80999 1.21849 1.00900 1.03786 0.91359 1.21518 0.98495 0.99279 0.95172 1.21482 0.98985 1.00562 0.93054 1.19574 0.95809 0.94778 0.95082 1.21174 1.06059 1.32393 0.96183 0.91114 1.25053 0.97556 0.96009 0.95056 1.69924 1.38809 1.41331 1.04378 0.86765 0.84807 0.80145 0.77516 1.20326 1.21454 1.18899 0.83949 0.85230 0.85724 0.85630 0.84926 0.82016 0.75217 0.88480 0.88243 0.91536 0.91568 0.92780 0.92724 0.96582 0.97043 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.59 18.54 41.84 0.78 -3.82 16 2 C 0.25 2.32 14.17 -22.48 -0.32 2.00 16 3 C -0.05 -0.43 5.75 -106.72 -0.61 -1.04 16 4 C -0.02 -0.16 9.48 -38.72 -0.37 -0.52 16 5 C -0.08 -0.58 5.74 -106.82 -0.61 -1.20 16 6 C -0.09 -0.53 9.76 -39.44 -0.38 -0.91 16 7 C -0.12 -0.68 9.95 -39.93 -0.40 -1.07 16 8 C -0.10 -0.62 9.95 -39.92 -0.40 -1.02 16 9 C -0.11 -0.84 9.76 -39.46 -0.38 -1.22 16 10 C -0.01 -0.06 5.74 -106.77 -0.61 -0.68 16 11 C -0.12 -1.26 8.39 -39.38 -0.33 -1.59 16 12 C 0.19 1.82 6.39 -83.84 -0.54 1.29 16 13 N -0.68 -6.47 5.14 -9.93 -0.05 -6.52 16 14 C 0.52 6.09 7.61 -10.98 -0.08 6.01 16 15 O -0.51 -7.50 13.12 5.55 0.07 -7.43 16 16 C -0.14 -1.58 5.70 -27.88 -0.16 -1.74 16 17 C -0.11 -1.65 4.50 -26.73 -0.12 -1.77 16 18 C -0.10 -1.95 5.15 -26.73 -0.14 -2.09 16 19 C -0.02 -0.36 4.04 -27.88 -0.11 -0.47 16 20 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 21 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 22 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 23 N -0.91 -28.21 13.96 55.43 0.77 -27.44 16 24 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 28 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 29 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 30 H 0.12 0.40 8.06 -52.49 -0.42 -0.02 16 31 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.16 1.87 5.69 -52.49 -0.30 1.57 16 34 H 0.41 3.13 7.86 -40.82 -0.32 2.81 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 42 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -34.25 369.87 -9.14 -43.39 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -5.62 Total: -1.67 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -6.00 Total: -19.52 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 1.50 Total: -37.78 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.07 Total: -7.43 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.25 -9.14 -43.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839438558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.187 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds