Wall clock time and date at job start Tue Mar 31 2020 13:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.38545 * 119.79877 * 77.80307 * 3 2 1 5 5 C 1.40237 * 119.54096 * 179.97438 * 4 3 2 6 6 C 1.40683 * 121.02392 * 180.02562 * 5 4 3 7 7 C 1.36068 * 119.68638 * 180.02562 * 6 5 4 8 8 C 1.39393 * 120.97287 * 359.94827 * 7 6 5 9 9 C 1.36100 * 121.01967 * 0.02562 * 8 7 6 10 10 C 1.40590 * 119.72302 * 0.02562 * 9 8 7 11 11 C 1.40460 * 120.97837 * 179.97438 * 10 9 8 12 12 C 1.36488 * 119.98982 * 180.30088 * 11 10 9 13 13 N 1.39536 * 119.66667 * 179.72790 * 12 11 10 14 14 C 1.34773 * 120.00097 * 24.99661 * 13 12 11 15 15 O 1.21288 * 120.00315 * 5.54457 * 14 13 12 16 16 C 1.50706 * 119.99762 * 185.54121 * 14 13 12 17 17 C 1.53008 * 109.46661 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46538 * 180.02562 * 17 16 14 19 19 C 1.53008 * 109.46557 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.46680 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99987 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99469 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99685 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00412 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47199 * 90.00047 * 24 22 20 26 26 H 1.48503 * 109.46931 * 210.00253 * 24 22 20 27 27 H 1.48501 * 109.47044 * 330.00176 * 24 22 20 28 28 H 1.07997 * 120.23038 * 359.97438 * 4 3 2 29 29 H 1.07998 * 120.15653 * 0.04106 * 6 5 4 30 30 H 1.08001 * 119.51519 * 179.97438 * 7 6 5 31 31 H 1.08001 * 119.48877 * 180.02562 * 8 7 6 32 32 H 1.07996 * 120.14126 * 180.02562 * 9 8 7 33 33 H 1.07997 * 120.00066 * 0.02721 * 11 10 9 34 34 H 0.96998 * 120.00042 * 205.01029 * 13 12 11 35 35 H 1.08998 * 109.47053 * 299.99714 * 16 14 13 36 36 H 1.08994 * 109.47228 * 60.00714 * 16 14 13 37 37 H 1.09000 * 109.47161 * 299.99271 * 17 16 14 38 38 H 1.08994 * 109.47222 * 60.00091 * 17 16 14 39 39 H 1.08990 * 109.47306 * 299.99309 * 18 17 16 40 40 H 1.08994 * 109.47290 * 60.00132 * 18 17 16 41 41 H 1.08992 * 109.47585 * 299.99777 * 19 18 17 42 42 H 1.09002 * 109.46698 * 60.00534 * 19 18 17 43 43 H 0.97003 * 119.99946 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2565 -0.2531 -1.1751 5 6 4.6589 -0.2506 -1.1691 6 6 5.3895 -0.5037 -2.3444 7 6 6.7497 -0.4951 -2.3073 8 6 7.4333 -0.2377 -1.1202 9 6 6.7609 0.0121 0.0365 10 6 5.3550 0.0110 0.0396 11 6 4.6345 0.2649 1.2182 12 6 3.2698 0.2528 1.1995 13 7 2.5608 0.5003 2.3756 14 6 3.1266 1.2198 3.3649 15 8 4.2105 1.7368 3.1952 16 6 2.4123 1.3819 4.6820 17 6 3.2644 2.2369 5.6223 18 6 2.5395 2.4009 6.9597 19 6 3.3919 3.2553 7.9002 20 6 2.6776 3.4174 9.2173 21 1 1.7122 2.9575 9.3682 22 6 3.2562 4.1539 10.2291 23 7 2.6332 4.2949 11.3787 24 14 4.9257 4.9500 9.9677 25 1 4.7416 6.3164 9.4159 26 1 5.6433 5.0327 11.2652 27 1 5.7195 4.1339 9.0142 28 1 2.7171 -0.4514 -2.0895 29 1 4.8732 -0.7037 -3.2716 30 1 7.3078 -0.6902 -3.2111 31 1 8.5134 -0.2363 -1.1182 32 1 7.3050 0.2102 0.9481 33 1 5.1603 0.4653 2.1400 34 1 1.6607 0.1544 2.4812 35 1 1.4522 1.8707 4.5169 36 1 2.2488 0.4017 5.1297 37 1 4.2247 1.7484 5.7875 38 1 3.4276 3.2170 5.1744 39 1 1.5791 2.8891 6.7949 40 1 2.3767 1.4205 7.4073 41 1 4.3521 2.7668 8.0649 42 1 3.5549 4.2358 7.4526 43 1 3.0401 4.8134 12.0905 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839438558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:23 Heat of formation + Delta-G solvation = 2.732671 kcal Electronic energy + Delta-G solvation = -24645.246462 eV Core-core repulsion = 21039.872196 eV Total energy + Delta-G solvation = -3605.374265 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.10689 -40.69002 -38.59349 -37.17358 -36.61286 -35.37535 -34.63564 -33.59696 -32.06088 -31.23284 -29.80548 -27.65343 -25.56206 -24.75777 -23.30200 -23.06004 -21.76116 -21.44144 -20.41821 -19.31410 -18.85331 -18.22495 -17.41025 -16.98678 -16.43941 -16.31579 -16.25622 -15.84565 -15.48387 -15.30347 -15.13243 -14.79283 -14.59687 -14.29578 -14.26245 -14.21580 -13.92527 -13.81587 -13.68107 -13.56547 -13.27839 -12.90494 -12.62327 -12.35905 -12.24948 -12.10158 -11.94066 -11.75585 -11.50567 -11.37170 -11.30285 -11.26084 -10.91034 -10.76021 -10.60504 -9.39594 -8.68640 -8.29553 -6.32883 -0.69806 -0.26055 0.97620 1.27239 1.35396 1.36748 1.45734 1.49534 1.66960 1.84585 2.36103 2.36114 2.68420 3.05846 3.13529 3.50692 3.65833 3.89909 3.94101 3.99616 4.07488 4.12128 4.18299 4.39024 4.43124 4.54503 4.60919 4.64870 4.73535 4.80838 4.83135 4.90676 5.03643 5.05500 5.12955 5.18815 5.19457 5.27189 5.36626 5.59078 5.60383 5.63806 5.65578 5.68768 5.76941 6.03723 6.15592 6.29452 6.33608 6.75369 6.94034 7.31907 8.87040 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016962 B = 0.002238 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.358002 B =12509.733558 C =14023.892009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.273 3.727 3 C -0.064 4.064 4 C 0.000 4.000 5 C -0.090 4.090 6 C -0.087 4.087 7 C -0.128 4.128 8 C -0.094 4.094 9 C -0.136 4.136 10 C -0.020 4.020 11 C -0.141 4.141 12 C 0.176 3.824 13 N -0.668 5.668 14 C 0.517 3.483 15 O -0.542 6.542 16 C -0.132 4.132 17 C -0.097 4.097 18 C -0.095 4.095 19 C -0.017 4.017 20 C -0.531 4.531 21 H 0.035 0.965 22 C 0.001 3.999 23 N -0.951 5.951 24 Si 0.950 3.050 25 H -0.268 1.268 26 H -0.283 1.283 27 H -0.249 1.249 28 H 0.176 0.824 29 H 0.162 0.838 30 H 0.153 0.847 31 H 0.145 0.855 32 H 0.129 0.871 33 H 0.141 0.859 34 H 0.421 0.579 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.017 0.983 42 H 0.013 0.987 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.786 -14.092 -34.677 38.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.042 4.042 3 C -0.070 4.070 4 C -0.021 4.021 5 C -0.091 4.091 6 C -0.105 4.105 7 C -0.146 4.146 8 C -0.112 4.112 9 C -0.154 4.154 10 C -0.022 4.022 11 C -0.162 4.162 12 C 0.079 3.921 13 N -0.312 5.312 14 C 0.308 3.692 15 O -0.419 6.419 16 C -0.172 4.172 17 C -0.135 4.135 18 C -0.133 4.133 19 C -0.054 4.054 20 C -0.569 4.569 21 H 0.053 0.947 22 C -0.196 4.196 23 N -0.592 5.592 24 Si 0.773 3.227 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.173 1.173 28 H 0.193 0.807 29 H 0.180 0.820 30 H 0.171 0.829 31 H 0.163 0.837 32 H 0.147 0.853 33 H 0.159 0.841 34 H 0.259 0.741 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.032 0.968 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.756 -13.637 -34.521 37.727 hybrid contribution 0.349 0.508 1.031 1.201 sum 7.104 -13.129 -33.490 36.666 Atomic orbital electron populations 1.81344 1.12630 1.10512 1.07571 1.25585 0.92369 0.92738 0.93493 1.15664 0.83653 1.13513 0.94171 1.21596 0.92724 0.91240 0.96572 1.18158 0.93015 1.03735 0.94185 1.21421 0.94653 0.97253 0.97178 1.21268 0.94751 0.99638 0.98927 1.21317 1.01611 0.96008 0.92276 1.21242 0.92500 1.01663 1.00021 1.18261 0.94502 0.96856 0.92532 1.21124 0.92207 1.03209 0.99665 1.17282 0.91279 0.98629 0.84953 1.43603 1.19601 1.53237 1.14803 1.21357 0.85844 0.75989 0.86041 1.90673 1.22517 1.47037 1.81657 1.21745 1.00609 1.04385 0.90444 1.21296 0.98479 0.99665 0.94052 1.21344 0.98455 0.99654 0.93852 1.19574 0.96113 0.95916 0.93800 1.21556 1.05117 1.31706 0.98510 0.94674 1.26038 1.02008 0.96827 0.94682 1.70071 1.40977 1.42653 1.05532 0.85663 0.79629 0.79442 0.77958 1.19308 1.20836 1.17252 0.80657 0.82042 0.82918 0.83678 0.85299 0.84113 0.74121 0.86586 0.85969 0.92214 0.92544 0.92672 0.92421 0.96512 0.96827 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.60 18.54 19.00 0.35 -9.25 16 2 C 0.27 4.73 14.17 88.33 1.25 5.98 16 3 C -0.06 -0.99 5.75 -21.22 -0.12 -1.11 16 4 C 0.00 0.00 9.48 22.83 0.22 0.21 16 5 C -0.09 -1.15 5.74 -21.29 -0.12 -1.27 16 6 C -0.09 -0.67 9.76 22.36 0.22 -0.45 16 7 C -0.13 -0.95 9.95 22.04 0.22 -0.73 16 8 C -0.09 -0.97 9.95 22.05 0.22 -0.75 16 9 C -0.14 -2.06 9.76 22.35 0.22 -1.84 16 10 C -0.02 -0.35 5.74 -21.26 -0.12 -0.48 16 11 C -0.14 -2.96 8.39 22.40 0.19 -2.77 16 12 C 0.18 3.37 6.39 38.25 0.24 3.62 16 13 N -0.67 -12.47 5.14 -303.72 -1.56 -14.03 16 14 C 0.52 12.11 7.61 87.66 0.67 12.77 16 15 O -0.54 -16.43 13.12 -3.06 -0.04 -16.47 16 16 C -0.13 -2.84 5.70 29.85 0.17 -2.67 16 17 C -0.10 -2.94 4.50 30.60 0.14 -2.80 16 18 C -0.10 -3.57 5.15 30.60 0.16 -3.41 16 19 C -0.02 -0.79 4.04 29.85 0.12 -0.67 16 20 C -0.53 -31.19 9.66 25.60 0.25 -30.94 16 21 H 0.03 2.24 7.99 -2.91 -0.02 2.22 16 22 C 0.00 0.06 5.47 84.65 0.46 0.52 16 23 N -0.95 -60.70 13.96 21.45 0.30 -60.41 16 24 Si 0.95 45.64 27.47 68.60 1.88 47.53 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 28 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 29 H 0.16 0.19 8.06 -2.91 -0.02 0.17 16 30 H 0.15 0.29 8.06 -2.91 -0.02 0.27 16 31 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 32 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.14 3.52 5.69 -2.91 -0.02 3.50 16 34 H 0.42 6.04 7.86 -92.71 -0.73 5.31 16 35 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 1.89 8.10 -2.39 -0.02 1.87 16 38 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 42 H 0.01 0.63 7.57 -2.39 -0.02 0.62 16 43 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -76.69 369.87 5.56 -71.13 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.26 Total: 8.29 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 4.37 Total: -26.79 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -0.91 Total: -83.68 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.04 Total: -16.47 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.53 kcal Total: -76.69 5.56 -71.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839438558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.862 kcal (2) G-P(sol) polarization free energy of solvation -76.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds