Wall clock time and date at job start Tue Mar 31 2020 13:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99875 * 2 1 4 4 H 1.48499 * 109.47078 * 264.63953 * 3 2 1 5 5 H 1.48499 * 109.47113 * 24.63830 * 3 2 1 6 6 H 1.48501 * 109.47399 * 144.63770 * 3 2 1 7 7 C 1.37875 * 120.00511 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99376 * 4.85620 * 7 2 1 9 9 C 1.50693 * 120.00428 * 184.85114 * 7 2 1 10 10 H 1.09005 * 109.47185 * 34.72706 * 9 7 2 11 11 C 1.52997 * 109.47285 * 154.72540 * 9 7 2 12 12 C 1.50701 * 109.47014 * 295.00008 * 11 9 7 13 13 O 1.21280 * 119.99966 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99869 * 179.97438 * 12 11 9 15 15 C 1.46724 * 126.55153 * 180.02562 * 14 12 11 16 16 C 1.50472 * 107.65245 * 179.97438 * 15 14 12 17 17 C 1.38570 * 132.34888 * 179.97438 * 16 15 14 18 18 C 1.38257 * 118.98977 * 180.02562 * 17 16 15 19 19 N 1.31883 * 120.74097 * 0.27532 * 18 17 16 20 20 C 1.31883 * 121.80525 * 359.39176 * 19 18 17 21 21 C 1.38274 * 120.65057 * 0.64975 * 20 19 18 22 22 C 1.46705 * 126.55366 * 359.97438 * 14 12 11 23 23 C 1.50702 * 109.47217 * 274.72702 * 9 7 2 24 24 C 1.38231 * 119.99856 * 295.27245 * 23 9 7 25 25 C 1.38236 * 120.00177 * 179.81079 * 24 23 9 26 26 C 1.38238 * 119.99598 * 0.40085 * 25 24 23 27 27 C 1.38235 * 120.00145 * 359.85072 * 26 25 24 28 28 C 1.38235 * 119.99866 * 115.55040 * 23 9 7 29 29 H 0.96998 * 119.99749 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47406 * 175.00572 * 11 9 7 31 31 H 1.09004 * 109.47051 * 55.00181 * 11 9 7 32 32 H 1.09000 * 109.82182 * 60.46950 * 15 14 12 33 33 H 1.08994 * 109.82322 * 299.53262 * 15 14 12 34 34 H 1.07993 * 120.50345 * 0.02776 * 17 16 15 35 35 H 1.08003 * 119.62761 * 180.02562 * 18 17 16 36 36 H 1.08006 * 119.67345 * 180.27273 * 20 19 18 37 37 H 1.09000 * 109.81461 * 299.54739 * 22 14 12 38 38 H 1.08995 * 109.81156 * 60.38628 * 22 14 12 39 39 H 1.08000 * 120.00123 * 359.97438 * 24 23 9 40 40 H 1.08001 * 120.00499 * 180.23275 * 25 24 23 41 41 H 1.07999 * 120.00041 * 179.83537 * 26 25 24 42 42 H 1.08005 * 120.00131 * 179.97438 * 27 26 25 43 43 H 1.07994 * 120.00149 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6099 1.9811 -1.3939 5 1 1.3945 2.6827 0.5837 6 1 3.4855 1.4757 0.8103 7 6 2.0046 -1.1940 0.0005 8 1 1.4675 -2.1276 -0.0782 9 6 3.5075 -1.1962 0.1109 10 1 3.8257 -0.3774 0.7562 11 6 3.9731 -2.5260 0.7073 12 6 3.4693 -2.6456 2.1226 13 8 2.8030 -1.7551 2.6063 14 7 3.7583 -3.7425 2.8504 15 6 3.3442 -4.0081 4.2327 16 6 3.8976 -5.3514 4.6247 17 6 3.8182 -6.0881 5.7956 18 6 4.4452 -7.3187 5.8568 19 7 5.1146 -7.7865 4.8213 20 6 5.2044 -7.1140 3.6904 21 6 4.6034 -5.8759 3.5569 22 6 4.5460 -4.8997 2.4114 23 6 4.1121 -1.0208 -1.2584 24 6 3.9294 -1.9926 -2.2242 25 6 4.4806 -1.8299 -3.4815 26 6 5.2215 -0.6991 -3.7702 27 6 5.4085 0.2704 -2.8027 28 6 4.8541 0.1094 -1.5466 29 1 -0.4850 0.8400 0.0004 30 1 5.0625 -2.5636 0.7052 31 1 3.5799 -3.3493 0.1108 32 1 2.2562 -4.0244 4.2960 33 1 3.7424 -3.2372 4.8924 34 1 3.2748 -5.7067 6.6474 35 1 4.3896 -7.9018 6.7643 36 1 5.7579 -7.5318 2.8623 37 1 4.0673 -5.3677 1.5513 38 1 5.5538 -4.5810 2.1452 39 1 3.3538 -2.8779 -1.9975 40 1 4.3347 -2.5874 -4.2373 41 1 5.6544 -0.5731 -4.7516 42 1 5.9877 1.1537 -3.0281 43 1 5.0002 0.8667 -0.7907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848381116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:34 Heat of formation + Delta-G solvation = 43.532040 kcal Electronic energy + Delta-G solvation = -26164.947032 eV Core-core repulsion = 22561.341960 eV Total energy + Delta-G solvation = -3603.605072 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13227 -39.25593 -38.47384 -36.60906 -34.16937 -32.50708 -31.74540 -31.51522 -30.28268 -29.30589 -28.15676 -26.53895 -25.16830 -22.72756 -22.34278 -22.16564 -21.85806 -20.02041 -18.80698 -17.20213 -16.99798 -16.58565 -16.24070 -16.03274 -15.78382 -15.50891 -14.77602 -14.53561 -14.34707 -14.06112 -13.88606 -13.47050 -13.24624 -13.07113 -13.00732 -12.82235 -12.62915 -12.38780 -12.20272 -11.91547 -11.85031 -11.65667 -11.20135 -10.74834 -10.61758 -10.40355 -9.93748 -9.89588 -9.84962 -9.63030 -9.32425 -9.27956 -9.13212 -8.51025 -8.31936 -8.25156 -7.84410 -6.02119 -3.98909 0.81983 0.95673 2.03865 2.10018 3.05315 3.27195 3.38350 3.41490 3.43486 3.49877 3.97112 4.11113 4.34088 4.46534 4.52057 4.70748 4.86266 5.04960 5.18239 5.32896 5.35125 5.45773 5.46888 5.49371 5.51021 5.53053 5.60039 5.63945 5.71052 5.86208 5.92217 5.97778 6.00503 6.17126 6.27002 6.33478 6.40484 6.53303 6.65252 6.77294 6.98869 7.09684 7.20232 7.54070 7.66244 7.68584 7.76409 7.78242 8.48214 8.76726 8.96684 9.60721 11.10924 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015317 B = 0.003535 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.552203 B = 7918.412206 C = 9179.353389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.084 3.916 3 Si 0.868 3.132 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.262 1.262 7 C -0.485 4.485 8 H 0.072 0.928 9 C 0.048 3.952 10 H 0.055 0.945 11 C -0.107 4.107 12 C 0.539 3.461 13 O -0.487 6.487 14 N -0.632 5.632 15 C 0.147 3.853 16 C -0.056 4.056 17 C -0.150 4.150 18 C 0.099 3.901 19 N -0.483 5.483 20 C 0.123 3.877 21 C -0.157 4.157 22 C 0.153 3.847 23 C -0.038 4.038 24 C -0.107 4.107 25 C -0.124 4.124 26 C -0.150 4.150 27 C -0.122 4.122 28 C -0.141 4.141 29 H 0.263 0.737 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.225 -11.616 5.034 17.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.119 4.119 3 Si 0.696 3.304 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.188 1.188 7 C -0.522 4.522 8 H 0.090 0.910 9 C 0.028 3.972 10 H 0.073 0.927 11 C -0.148 4.148 12 C 0.328 3.672 13 O -0.357 6.357 14 N -0.372 5.372 15 C 0.025 3.975 16 C -0.064 4.064 17 C -0.170 4.170 18 C -0.058 4.058 19 N -0.191 5.191 20 C -0.034 4.034 21 C -0.159 4.159 22 C 0.028 3.972 23 C -0.039 4.039 24 C -0.125 4.125 25 C -0.142 4.142 26 C -0.168 4.168 27 C -0.140 4.140 28 C -0.160 4.160 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.156 0.844 35 H 0.178 0.822 36 H 0.176 0.824 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.037 -11.663 5.298 17.578 hybrid contribution -0.210 1.724 -0.096 1.739 sum 11.827 -9.940 5.203 16.302 Atomic orbital electron populations 1.69882 1.06283 1.26845 1.50401 1.24868 0.94519 0.98763 0.93745 0.87057 0.80372 0.84219 0.78754 1.19716 1.21900 1.18762 1.20603 0.87156 0.94522 1.49900 0.91004 1.18286 0.97227 0.93149 0.88514 0.92691 1.21615 0.99688 1.02155 0.91294 1.20574 0.79736 0.79153 0.87719 1.90787 1.35874 1.37797 1.71255 1.48313 1.55690 1.19624 1.13530 1.20095 1.00370 0.92104 0.84972 1.20745 0.95479 0.96167 0.94046 1.21528 1.01982 0.95770 0.97767 1.22738 0.92826 0.93111 0.97120 1.67775 1.16692 1.34614 1.00009 1.22123 0.96101 0.89694 0.95478 1.21412 1.00298 0.97066 0.97155 1.20142 0.97093 0.85148 0.94779 1.20737 0.91455 0.92799 0.98923 1.20924 0.99127 0.99725 0.92754 1.21050 0.98695 0.97683 0.96765 1.20864 1.01823 0.95424 0.98703 1.20969 1.00537 0.98602 0.93873 1.21084 0.99454 0.98524 0.96900 0.92764 0.90960 0.89480 0.89532 0.89792 0.84371 0.82242 0.82351 0.89673 0.89806 0.86354 0.87093 0.87323 0.87285 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 2 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 3 Si 0.87 22.34 24.76 -169.99 -4.21 18.13 16 4 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.26 -6.45 5.95 56.52 0.34 -6.12 16 7 C -0.48 -13.20 7.19 -34.44 -0.25 -13.45 16 8 H 0.07 2.12 8.05 -52.48 -0.42 1.70 16 9 C 0.05 1.07 1.24 -92.93 -0.12 0.95 16 10 H 0.06 1.34 5.26 -51.93 -0.27 1.06 16 11 C -0.11 -1.94 4.09 -27.88 -0.11 -2.05 16 12 C 0.54 10.43 7.62 -10.98 -0.08 10.35 16 13 O -0.49 -11.86 15.36 5.56 0.09 -11.78 16 14 N -0.63 -9.58 3.34 -176.28 -0.59 -10.17 16 15 C 0.15 1.98 6.90 -5.18 -0.04 1.95 16 16 C -0.06 -0.63 6.29 -104.58 -0.66 -1.29 16 17 C -0.15 -1.39 10.12 -39.45 -0.40 -1.79 16 18 C 0.10 0.89 11.19 -17.52 -0.20 0.70 16 19 N -0.48 -5.19 10.36 -13.21 -0.14 -5.33 16 20 C 0.12 1.22 11.19 -17.52 -0.20 1.02 16 21 C -0.16 -1.69 6.27 -104.62 -0.66 -2.35 16 22 C 0.15 1.71 6.54 -5.13 -0.03 1.68 16 23 C -0.04 -0.79 4.30 -104.62 -0.45 -1.24 16 24 C -0.11 -2.00 8.94 -39.58 -0.35 -2.35 16 25 C -0.12 -2.04 10.05 -39.58 -0.40 -2.44 16 26 C -0.15 -2.40 10.05 -39.58 -0.40 -2.80 16 27 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 28 C -0.14 -2.79 8.16 -39.58 -0.32 -3.11 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.45 7.33 -51.93 -0.38 1.07 16 32 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.12 2.10 7.37 -52.49 -0.39 1.72 16 40 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 43 H 0.11 2.15 6.76 -52.49 -0.35 1.80 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -34.73 355.72 -9.54 -44.27 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.67 Total: 3.01 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -5.15 Total: -16.38 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.05 Total: -42.61 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.21 Total: 18.13 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.73 -9.54 -44.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848381116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.800 kcal (2) G-P(sol) polarization free energy of solvation -34.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds