Wall clock time and date at job start Tue Mar 31 2020 13:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99875 * 2 1 4 4 H 1.48499 * 109.47078 * 264.63953 * 3 2 1 5 5 H 1.48499 * 109.47113 * 24.63830 * 3 2 1 6 6 H 1.48501 * 109.47399 * 144.63770 * 3 2 1 7 7 C 1.37875 * 120.00511 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99376 * 4.85620 * 7 2 1 9 9 C 1.50693 * 120.00428 * 184.85114 * 7 2 1 10 10 H 1.09005 * 109.47185 * 34.72706 * 9 7 2 11 11 C 1.52997 * 109.47285 * 154.72540 * 9 7 2 12 12 C 1.50701 * 109.47014 * 295.00008 * 11 9 7 13 13 O 1.21280 * 119.99966 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99869 * 179.97438 * 12 11 9 15 15 C 1.46724 * 126.55153 * 180.02562 * 14 12 11 16 16 C 1.50472 * 107.65245 * 179.97438 * 15 14 12 17 17 C 1.38570 * 132.34888 * 179.97438 * 16 15 14 18 18 C 1.38257 * 118.98977 * 180.02562 * 17 16 15 19 19 N 1.31883 * 120.74097 * 0.27532 * 18 17 16 20 20 C 1.31883 * 121.80525 * 359.39176 * 19 18 17 21 21 C 1.38274 * 120.65057 * 0.64975 * 20 19 18 22 22 C 1.46705 * 126.55366 * 359.97438 * 14 12 11 23 23 C 1.50702 * 109.47217 * 274.72702 * 9 7 2 24 24 C 1.38231 * 119.99856 * 295.27245 * 23 9 7 25 25 C 1.38236 * 120.00177 * 179.81079 * 24 23 9 26 26 C 1.38238 * 119.99598 * 0.40085 * 25 24 23 27 27 C 1.38235 * 120.00145 * 359.85072 * 26 25 24 28 28 C 1.38235 * 119.99866 * 115.55040 * 23 9 7 29 29 H 0.96998 * 119.99749 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47406 * 175.00572 * 11 9 7 31 31 H 1.09004 * 109.47051 * 55.00181 * 11 9 7 32 32 H 1.09000 * 109.82182 * 60.46950 * 15 14 12 33 33 H 1.08994 * 109.82322 * 299.53262 * 15 14 12 34 34 H 1.07993 * 120.50345 * 0.02776 * 17 16 15 35 35 H 1.08003 * 119.62761 * 180.02562 * 18 17 16 36 36 H 1.08006 * 119.67345 * 180.27273 * 20 19 18 37 37 H 1.09000 * 109.81461 * 299.54739 * 22 14 12 38 38 H 1.08995 * 109.81156 * 60.38628 * 22 14 12 39 39 H 1.08000 * 120.00123 * 359.97438 * 24 23 9 40 40 H 1.08001 * 120.00499 * 180.23275 * 25 24 23 41 41 H 1.07999 * 120.00041 * 179.83537 * 26 25 24 42 42 H 1.08005 * 120.00131 * 179.97438 * 27 26 25 43 43 H 1.07994 * 120.00149 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6099 1.9811 -1.3939 5 1 1.3945 2.6827 0.5837 6 1 3.4855 1.4757 0.8103 7 6 2.0046 -1.1940 0.0005 8 1 1.4675 -2.1276 -0.0782 9 6 3.5075 -1.1962 0.1109 10 1 3.8257 -0.3774 0.7562 11 6 3.9731 -2.5260 0.7073 12 6 3.4693 -2.6456 2.1226 13 8 2.8030 -1.7551 2.6063 14 7 3.7583 -3.7425 2.8504 15 6 3.3442 -4.0081 4.2327 16 6 3.8976 -5.3514 4.6247 17 6 3.8182 -6.0881 5.7956 18 6 4.4452 -7.3187 5.8568 19 7 5.1146 -7.7865 4.8213 20 6 5.2044 -7.1140 3.6904 21 6 4.6034 -5.8759 3.5569 22 6 4.5460 -4.8997 2.4114 23 6 4.1121 -1.0208 -1.2584 24 6 3.9294 -1.9926 -2.2242 25 6 4.4806 -1.8299 -3.4815 26 6 5.2215 -0.6991 -3.7702 27 6 5.4085 0.2704 -2.8027 28 6 4.8541 0.1094 -1.5466 29 1 -0.4850 0.8400 0.0004 30 1 5.0625 -2.5636 0.7052 31 1 3.5799 -3.3493 0.1108 32 1 2.2562 -4.0244 4.2960 33 1 3.7424 -3.2372 4.8924 34 1 3.2748 -5.7067 6.6474 35 1 4.3896 -7.9018 6.7643 36 1 5.7579 -7.5318 2.8623 37 1 4.0673 -5.3677 1.5513 38 1 5.5538 -4.5810 2.1452 39 1 3.3538 -2.8779 -1.9975 40 1 4.3347 -2.5874 -4.2373 41 1 5.6544 -0.5731 -4.7516 42 1 5.9877 1.1537 -3.0281 43 1 5.0002 0.8667 -0.7907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848381116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:33 Heat of formation + Delta-G solvation = 21.569064 kcal Electronic energy + Delta-G solvation = -26165.899418 eV Core-core repulsion = 22561.341960 eV Total energy + Delta-G solvation = -3604.557458 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.06007 -40.62881 -39.81969 -37.80527 -35.89563 -33.84069 -33.32968 -32.51642 -31.64247 -30.61681 -29.26504 -28.04240 -26.54410 -24.25970 -23.37256 -23.16803 -22.99309 -21.47953 -20.24522 -19.07207 -18.37120 -17.50450 -17.45744 -17.24267 -16.87280 -16.55974 -16.41026 -15.91967 -15.60364 -15.33752 -15.29494 -14.78353 -14.48535 -14.38837 -14.12443 -14.09242 -14.00771 -13.84009 -13.58030 -13.40482 -13.21123 -12.95017 -12.65384 -12.43480 -12.13611 -11.90498 -11.82429 -11.48485 -11.09459 -10.90688 -10.83188 -10.64337 -10.56891 -10.11647 -9.63130 -9.48281 -9.31590 -8.24683 -6.21262 0.06891 0.15366 0.65889 0.71606 1.29108 1.32250 1.37545 1.74571 1.84482 2.36563 2.74317 3.05627 3.08679 3.19414 3.25070 3.64379 3.80156 3.91677 4.07262 4.22808 4.27267 4.29542 4.33313 4.37286 4.37738 4.47478 4.48894 4.53280 4.60989 4.64600 4.80685 4.84020 4.84902 4.90133 4.96537 5.11639 5.20759 5.33353 5.38062 5.38482 5.66423 5.67370 5.75650 5.80383 5.99721 6.29456 6.33325 6.46705 6.77595 6.94764 7.29247 7.40896 8.92527 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015317 B = 0.003535 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.552203 B = 7918.412206 C = 9179.353389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.020 3.980 3 Si 0.919 3.081 4 H -0.259 1.259 5 H -0.301 1.301 6 H -0.250 1.250 7 C -0.463 4.463 8 H 0.035 0.965 9 C 0.050 3.950 10 H 0.032 0.968 11 C -0.101 4.101 12 C 0.534 3.466 13 O -0.554 6.554 14 N -0.630 5.630 15 C 0.145 3.855 16 C -0.072 4.072 17 C -0.148 4.148 18 C 0.100 3.900 19 N -0.500 5.500 20 C 0.125 3.875 21 C -0.162 4.162 22 C 0.148 3.852 23 C -0.062 4.062 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.141 4.141 27 C -0.124 4.124 28 C -0.162 4.162 29 H 0.259 0.741 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.160 0.840 35 H 0.191 0.809 36 H 0.186 0.814 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.137 0.863 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.549 -13.274 3.642 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.176 4.176 3 Si 0.746 3.254 4 H -0.184 1.184 5 H -0.228 1.228 6 H -0.175 1.175 7 C -0.501 4.501 8 H 0.053 0.947 9 C 0.030 3.970 10 H 0.051 0.949 11 C -0.141 4.141 12 C 0.325 3.675 13 O -0.429 6.429 14 N -0.366 5.366 15 C 0.022 3.978 16 C -0.081 4.081 17 C -0.168 4.168 18 C -0.057 4.057 19 N -0.208 5.208 20 C -0.032 4.032 21 C -0.164 4.164 22 C 0.025 3.975 23 C -0.063 4.063 24 C -0.138 4.138 25 C -0.138 4.138 26 C -0.158 4.158 27 C -0.142 4.142 28 C -0.180 4.180 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.177 0.823 35 H 0.208 0.792 36 H 0.203 0.797 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.136 0.864 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.155 0.845 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.428 -13.388 3.906 20.797 hybrid contribution -1.149 2.045 0.343 2.371 sum 14.280 -11.343 4.249 18.725 Atomic orbital electron populations 1.70034 1.07959 1.27211 1.54196 1.25617 0.95109 1.02229 0.94674 0.86221 0.79430 0.80356 0.79373 1.18396 1.22839 1.17491 1.20833 0.89988 0.92498 1.46754 0.94695 1.18118 0.94022 0.94728 0.90095 0.94936 1.21546 1.01883 1.00244 0.90379 1.20787 0.79020 0.79366 0.88322 1.90756 1.39050 1.40472 1.72665 1.48168 1.54926 1.19524 1.14004 1.20093 0.99649 0.93825 0.84220 1.20651 0.96621 0.95288 0.95514 1.21799 1.01683 0.95617 0.97663 1.23263 0.91634 0.92992 0.97767 1.67856 1.17286 1.35071 1.00635 1.22508 0.95664 0.89006 0.96049 1.21399 1.00884 0.97530 0.96611 1.20394 0.97733 0.83925 0.95413 1.20452 0.93661 0.94400 0.97742 1.21043 0.99647 0.99477 0.93620 1.21435 0.97416 0.98660 0.96284 1.21350 1.00312 0.94242 0.99926 1.21328 1.00038 0.99970 0.92881 1.21190 1.00503 0.98075 0.98242 0.93227 0.87215 0.88031 0.91176 0.90143 0.82264 0.79221 0.79726 0.88362 0.87423 0.86376 0.83826 0.83500 0.84468 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.61 13.96 21.45 0.30 -62.31 16 2 C 0.02 1.22 5.47 84.65 0.46 1.68 16 3 Si 0.92 47.81 24.76 68.60 1.70 49.51 16 4 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.30 -15.86 7.11 99.48 0.71 -15.15 16 6 H -0.25 -12.34 5.95 99.48 0.59 -11.75 16 7 C -0.46 -26.35 7.19 25.60 0.18 -26.17 16 8 H 0.03 2.18 8.05 -2.91 -0.02 2.16 16 9 C 0.05 2.27 1.24 -12.29 -0.02 2.25 16 10 H 0.03 1.62 5.26 -2.38 -0.01 1.61 16 11 C -0.10 -3.62 4.09 29.85 0.12 -3.50 16 12 C 0.53 21.33 7.62 87.66 0.67 22.00 16 13 O -0.55 -28.61 15.36 -3.03 -0.05 -28.66 16 14 N -0.63 -19.24 3.34 -830.00 -2.77 -22.01 16 15 C 0.15 4.03 6.90 85.52 0.59 4.62 16 16 C -0.07 -1.57 6.29 -19.83 -0.12 -1.70 16 17 C -0.15 -2.48 10.12 22.35 0.23 -2.26 16 18 C 0.10 1.55 11.19 84.69 0.95 2.50 16 19 N -0.50 -9.47 10.36 -195.72 -2.03 -11.49 16 20 C 0.12 2.14 11.19 84.69 0.95 3.09 16 21 C -0.16 -3.21 6.27 -19.86 -0.12 -3.33 16 22 C 0.15 3.07 6.54 85.56 0.56 3.63 16 23 C -0.06 -2.50 4.30 -19.87 -0.09 -2.58 16 24 C -0.12 -4.25 8.94 22.27 0.20 -4.05 16 25 C -0.12 -3.49 10.05 22.27 0.22 -3.26 16 26 C -0.14 -3.83 10.05 22.27 0.22 -3.61 16 27 C -0.12 -3.82 10.05 22.27 0.22 -3.60 16 28 C -0.16 -6.11 8.16 22.27 0.18 -5.93 16 29 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 30 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.10 3.33 7.33 -2.38 -0.02 3.31 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.19 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.12 4.08 7.37 -2.91 -0.02 4.06 16 40 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 41 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 42 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 43 H 0.10 3.91 6.76 -2.91 -0.02 3.89 16 Total: -1.00 -81.22 355.72 3.46 -77.75 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.90 Total: 17.42 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 5.41 Total: -20.21 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -4.50 Total: -95.81 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.05 Total: -28.66 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.70 Total: 49.51 kcal Total: -81.22 3.46 -77.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848381116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.321 kcal (2) G-P(sol) polarization free energy of solvation -81.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds