Wall clock time and date at job start Tue Mar 31 2020 13:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86790 * 120.00284 * 2 1 4 4 H 1.48497 * 109.47362 * 270.00086 * 3 2 1 5 5 H 1.48500 * 109.47312 * 30.00445 * 3 2 1 6 6 H 1.48505 * 109.47121 * 150.00306 * 3 2 1 7 7 C 1.37878 * 119.99429 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99825 * 184.93877 * 7 2 1 9 9 C 1.50696 * 120.00559 * 4.93373 * 7 2 1 10 10 H 1.09006 * 109.46888 * 329.58661 * 9 7 2 11 11 C 1.52995 * 109.47344 * 209.59164 * 9 7 2 12 12 C 1.50701 * 109.47486 * 64.99687 * 11 9 7 13 13 O 1.21282 * 119.99797 * 0.02562 * 12 11 9 14 14 N 1.34779 * 120.00093 * 180.02562 * 12 11 9 15 15 C 1.46717 * 126.55191 * 180.02562 * 14 12 11 16 16 C 1.50474 * 107.65332 * 179.97438 * 15 14 12 17 17 C 1.38570 * 132.35177 * 180.02562 * 16 15 14 18 18 C 1.38256 * 118.99193 * 180.02562 * 17 16 15 19 19 N 1.31882 * 120.73748 * 0.27288 * 18 17 16 20 20 C 1.31884 * 121.80970 * 359.38567 * 19 18 17 21 21 C 1.38281 * 120.64874 * 0.66240 * 20 19 18 22 22 C 1.46708 * 126.55032 * 359.97438 * 14 12 11 23 23 C 1.50700 * 109.47152 * 89.58618 * 9 7 2 24 24 C 1.38228 * 119.99767 * 56.77530 * 23 9 7 25 25 C 1.38236 * 119.99727 * 179.78927 * 24 23 9 26 26 C 1.38229 * 120.00386 * 0.43805 * 25 24 23 27 27 C 1.38235 * 119.99678 * 359.81317 * 26 25 24 28 28 C 1.38234 * 119.99923 * 237.04755 * 23 9 7 29 29 H 0.96998 * 119.99810 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47030 * 304.99088 * 11 9 7 31 31 H 1.09007 * 109.47070 * 184.99783 * 11 9 7 32 32 H 1.09002 * 109.82214 * 60.46659 * 15 14 12 33 33 H 1.08991 * 109.88513 * 299.56606 * 15 14 12 34 34 H 1.08001 * 120.50123 * 0.02562 * 17 16 15 35 35 H 1.08004 * 119.62647 * 179.97438 * 18 17 16 36 36 H 1.08006 * 119.67559 * 180.26777 * 20 19 18 37 37 H 1.08996 * 109.81240 * 299.54761 * 22 14 12 38 38 H 1.08997 * 109.81156 * 60.38634 * 22 14 12 39 39 H 1.08004 * 120.00194 * 359.97438 * 24 23 9 40 40 H 1.08010 * 120.00052 * 180.27195 * 25 24 23 41 41 H 1.07998 * 120.00477 * 179.83579 * 26 25 24 42 42 H 1.08005 * 120.00198 * 179.97438 * 27 26 25 43 43 H 1.08003 * 120.00421 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1960 0.0800 9 6 1.2552 -2.4967 -0.1134 10 1 0.2696 -2.3894 0.3399 11 6 2.0327 -3.5969 0.6118 12 6 2.0797 -3.2904 2.0865 13 8 1.5435 -2.2906 2.5155 14 7 2.7175 -4.1272 2.9288 15 6 2.8509 -3.9707 4.3815 16 6 3.6398 -5.1441 4.8963 17 6 4.0557 -5.5035 6.1684 18 6 4.7844 -6.6671 6.3313 19 7 5.0863 -7.4241 5.2945 20 6 4.7006 -7.1145 4.0719 21 6 3.9699 -5.9651 3.8331 22 6 3.4101 -5.3693 2.5683 23 6 1.1023 -2.8641 -1.5669 24 6 2.2208 -2.9890 -2.3694 25 6 2.0809 -3.3303 -3.7017 26 6 0.8220 -3.5377 -4.2336 27 6 -0.2968 -3.4076 -3.4322 28 6 -0.1567 -3.0706 -2.0989 29 1 -0.4850 0.8400 0.0004 30 1 3.0480 -3.6441 0.2179 31 1 1.5375 -4.5553 0.4554 32 1 1.8639 -3.9579 4.8441 33 1 3.3770 -3.0434 4.6077 34 1 3.8143 -4.8840 7.0195 35 1 5.1141 -6.9567 7.3182 36 1 4.9636 -7.7618 3.2483 37 1 2.7066 -6.0653 2.1114 38 1 4.2198 -5.1519 1.8718 39 1 3.2042 -2.8230 -1.9549 40 1 2.9551 -3.4322 -4.3277 41 1 0.7126 -3.8017 -5.2750 42 1 -1.2805 -3.5693 -3.8478 43 1 -1.0309 -2.9690 -1.4728 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848381117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:37 Heat of formation + Delta-G solvation = 38.436065 kcal Electronic energy + Delta-G solvation = -26075.288732 eV Core-core repulsion = 22471.462682 eV Total energy + Delta-G solvation = -3603.826050 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.10005 -39.10503 -38.26010 -36.52922 -34.02397 -32.47655 -31.61440 -31.35465 -30.03085 -29.16962 -28.05619 -26.29199 -25.00067 -22.84243 -22.31083 -22.07203 -21.61283 -19.96141 -18.82378 -17.11157 -16.58972 -16.54061 -16.10915 -15.87140 -15.72949 -15.40081 -14.70291 -14.37008 -14.18776 -14.04905 -13.86132 -13.44357 -13.22072 -13.02504 -12.96682 -12.56251 -12.42133 -12.18392 -11.94896 -11.74624 -11.64836 -11.61150 -10.89447 -10.75446 -10.59645 -10.28617 -10.07322 -9.86847 -9.83515 -9.47527 -9.30193 -9.19797 -8.97331 -8.37532 -8.25250 -8.06722 -7.65027 -5.95218 -3.94997 0.83647 0.97326 2.26573 2.31625 3.13138 3.35538 3.37733 3.42131 3.44228 3.51466 3.99905 4.13472 4.36337 4.49621 4.71749 4.73083 4.90212 5.07206 5.28809 5.37862 5.41640 5.49810 5.53484 5.55251 5.63799 5.64975 5.70830 5.73689 5.82229 6.01770 6.03807 6.13441 6.24705 6.38174 6.39488 6.47142 6.50583 6.75908 6.88381 7.01483 7.29030 7.41715 7.49983 7.70062 7.84466 7.87727 7.92007 8.03628 8.34997 8.88368 9.04434 9.66421 11.14822 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.003601 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.407096 B = 7773.191089 C = 9258.204782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.077 3.923 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.494 4.494 8 H 0.051 0.949 9 C 0.078 3.922 10 H 0.073 0.927 11 C -0.114 4.114 12 C 0.537 3.463 13 O -0.482 6.482 14 N -0.634 5.634 15 C 0.148 3.852 16 C -0.056 4.056 17 C -0.151 4.151 18 C 0.098 3.902 19 N -0.483 5.483 20 C 0.123 3.877 21 C -0.156 4.156 22 C 0.153 3.847 23 C -0.023 4.023 24 C -0.114 4.114 25 C -0.132 4.132 26 C -0.154 4.154 27 C -0.128 4.128 28 C -0.119 4.119 29 H 0.259 0.741 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.520 -13.736 5.544 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.126 4.126 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.531 4.531 8 H 0.069 0.931 9 C 0.059 3.941 10 H 0.092 0.908 11 C -0.154 4.154 12 C 0.327 3.673 13 O -0.351 6.351 14 N -0.374 5.374 15 C 0.025 3.975 16 C -0.065 4.065 17 C -0.171 4.171 18 C -0.059 4.059 19 N -0.191 5.191 20 C -0.034 4.034 21 C -0.159 4.159 22 C 0.029 3.971 23 C -0.024 4.024 24 C -0.132 4.132 25 C -0.150 4.150 26 C -0.173 4.173 27 C -0.147 4.147 28 C -0.137 4.137 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.156 0.844 35 H 0.177 0.823 36 H 0.176 0.824 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.456 -13.680 5.835 16.213 hybrid contribution 0.073 1.828 -0.153 1.836 sum 6.529 -11.852 5.682 14.676 Atomic orbital electron populations 1.69900 1.05886 1.26408 1.49475 1.24812 0.94672 0.98852 0.94265 0.86703 0.80024 0.84083 0.77805 1.20825 1.21313 1.20074 1.20680 0.92374 0.89637 1.50421 0.93116 1.17856 0.98781 0.91386 0.86092 0.90849 1.21780 1.02678 1.00931 0.90034 1.20689 0.76911 0.81522 0.88211 1.90804 1.42486 1.24435 1.77383 1.48411 1.57712 1.24674 1.06586 1.20075 0.99405 0.95301 0.82750 1.20760 0.95682 0.96147 0.93872 1.21526 1.00248 0.98802 0.96518 1.22731 0.94491 0.90635 0.98001 1.67770 1.20239 1.31817 0.99287 1.22127 0.93313 0.93439 0.94568 1.21433 1.00573 0.97104 0.96758 1.20125 0.96699 0.86625 0.93665 1.20719 0.91773 0.90738 0.99138 1.20950 0.98993 1.00102 0.93186 1.20982 0.96557 1.01791 0.95693 1.20804 0.93111 1.04613 0.98738 1.20992 0.97606 1.01513 0.94542 1.21100 0.97718 1.00045 0.94820 0.93102 0.90299 0.91402 0.89837 0.89759 0.84411 0.82273 0.82360 0.89846 0.89798 0.86854 0.87634 0.87781 0.87613 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.61 12.85 55.43 0.71 -24.90 16 2 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.49 -13.06 6.38 -34.44 -0.22 -13.28 16 8 H 0.05 1.34 7.82 -52.48 -0.41 0.93 16 9 C 0.08 1.82 1.68 -92.93 -0.16 1.66 16 10 H 0.07 1.98 6.95 -51.93 -0.36 1.62 16 11 C -0.11 -2.15 4.20 -27.88 -0.12 -2.26 16 12 C 0.54 10.63 7.62 -10.98 -0.08 10.55 16 13 O -0.48 -11.93 15.36 5.56 0.09 -11.85 16 14 N -0.63 -9.81 3.34 -176.28 -0.59 -10.40 16 15 C 0.15 2.02 6.90 -5.19 -0.04 1.98 16 16 C -0.06 -0.64 6.29 -104.57 -0.66 -1.30 16 17 C -0.15 -1.42 10.12 -39.45 -0.40 -1.82 16 18 C 0.10 0.90 11.19 -17.52 -0.20 0.71 16 19 N -0.48 -5.27 10.36 -13.21 -0.14 -5.40 16 20 C 0.12 1.24 11.19 -17.51 -0.20 1.04 16 21 C -0.16 -1.73 6.27 -104.62 -0.66 -2.38 16 22 C 0.15 1.78 6.54 -5.13 -0.03 1.75 16 23 C -0.02 -0.50 4.77 -104.63 -0.50 -1.00 16 24 C -0.11 -2.25 8.86 -39.59 -0.35 -2.60 16 25 C -0.13 -2.31 10.05 -39.59 -0.40 -2.71 16 26 C -0.15 -2.63 10.05 -39.59 -0.40 -3.03 16 27 C -0.13 -2.33 10.05 -39.58 -0.40 -2.72 16 28 C -0.12 -2.46 9.67 -39.58 -0.38 -2.84 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.08 1.36 7.76 -51.93 -0.40 0.96 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.16 1.17 8.06 -52.48 -0.42 0.74 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.11 2.14 7.75 -52.48 -0.41 1.73 16 40 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 41 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 43 H 0.11 2.39 7.95 -52.48 -0.42 1.97 16 LS Contribution 365.63 15.07 5.51 5.51 Total: -1.00 -32.96 365.63 -10.50 -43.46 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.78 Total: 2.81 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -5.27 Total: -16.20 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.01 Total: -40.71 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.96 -10.50 -43.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848381117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.893 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds