Wall clock time and date at job start Tue Mar 31 2020 13:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86790 * 120.00284 * 2 1 4 4 H 1.48497 * 109.47362 * 270.00086 * 3 2 1 5 5 H 1.48500 * 109.47312 * 30.00445 * 3 2 1 6 6 H 1.48505 * 109.47121 * 150.00306 * 3 2 1 7 7 C 1.37878 * 119.99429 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99825 * 184.93877 * 7 2 1 9 9 C 1.50696 * 120.00559 * 4.93373 * 7 2 1 10 10 H 1.09006 * 109.46888 * 329.58661 * 9 7 2 11 11 C 1.52995 * 109.47344 * 209.59164 * 9 7 2 12 12 C 1.50701 * 109.47486 * 64.99687 * 11 9 7 13 13 O 1.21282 * 119.99797 * 0.02562 * 12 11 9 14 14 N 1.34779 * 120.00093 * 180.02562 * 12 11 9 15 15 C 1.46717 * 126.55191 * 180.02562 * 14 12 11 16 16 C 1.50474 * 107.65332 * 179.97438 * 15 14 12 17 17 C 1.38570 * 132.35177 * 180.02562 * 16 15 14 18 18 C 1.38256 * 118.99193 * 180.02562 * 17 16 15 19 19 N 1.31882 * 120.73748 * 0.27288 * 18 17 16 20 20 C 1.31884 * 121.80970 * 359.38567 * 19 18 17 21 21 C 1.38281 * 120.64874 * 0.66240 * 20 19 18 22 22 C 1.46708 * 126.55032 * 359.97438 * 14 12 11 23 23 C 1.50700 * 109.47152 * 89.58618 * 9 7 2 24 24 C 1.38228 * 119.99767 * 56.77530 * 23 9 7 25 25 C 1.38236 * 119.99727 * 179.78927 * 24 23 9 26 26 C 1.38229 * 120.00386 * 0.43805 * 25 24 23 27 27 C 1.38235 * 119.99678 * 359.81317 * 26 25 24 28 28 C 1.38234 * 119.99923 * 237.04755 * 23 9 7 29 29 H 0.96998 * 119.99810 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47030 * 304.99088 * 11 9 7 31 31 H 1.09007 * 109.47070 * 184.99783 * 11 9 7 32 32 H 1.09002 * 109.82214 * 60.46659 * 15 14 12 33 33 H 1.08991 * 109.88513 * 299.56606 * 15 14 12 34 34 H 1.08001 * 120.50123 * 0.02562 * 17 16 15 35 35 H 1.08004 * 119.62647 * 179.97438 * 18 17 16 36 36 H 1.08006 * 119.67559 * 180.26777 * 20 19 18 37 37 H 1.08996 * 109.81240 * 299.54761 * 22 14 12 38 38 H 1.08997 * 109.81156 * 60.38634 * 22 14 12 39 39 H 1.08004 * 120.00194 * 359.97438 * 24 23 9 40 40 H 1.08010 * 120.00052 * 180.27195 * 25 24 23 41 41 H 1.07998 * 120.00477 * 179.83579 * 26 25 24 42 42 H 1.08005 * 120.00198 * 179.97438 * 27 26 25 43 43 H 1.08003 * 120.00421 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1960 0.0800 9 6 1.2552 -2.4967 -0.1134 10 1 0.2696 -2.3894 0.3399 11 6 2.0327 -3.5969 0.6118 12 6 2.0797 -3.2904 2.0865 13 8 1.5435 -2.2906 2.5155 14 7 2.7175 -4.1272 2.9288 15 6 2.8509 -3.9707 4.3815 16 6 3.6398 -5.1441 4.8963 17 6 4.0557 -5.5035 6.1684 18 6 4.7844 -6.6671 6.3313 19 7 5.0863 -7.4241 5.2945 20 6 4.7006 -7.1145 4.0719 21 6 3.9699 -5.9651 3.8331 22 6 3.4101 -5.3693 2.5683 23 6 1.1023 -2.8641 -1.5669 24 6 2.2208 -2.9890 -2.3694 25 6 2.0809 -3.3303 -3.7017 26 6 0.8220 -3.5377 -4.2336 27 6 -0.2968 -3.4076 -3.4322 28 6 -0.1567 -3.0706 -2.0989 29 1 -0.4850 0.8400 0.0004 30 1 3.0480 -3.6441 0.2179 31 1 1.5375 -4.5553 0.4554 32 1 1.8639 -3.9579 4.8441 33 1 3.3770 -3.0434 4.6077 34 1 3.8143 -4.8840 7.0195 35 1 5.1141 -6.9567 7.3182 36 1 4.9636 -7.7618 3.2483 37 1 2.7066 -6.0653 2.1114 38 1 4.2198 -5.1519 1.8718 39 1 3.2042 -2.8230 -1.9549 40 1 2.9551 -3.4322 -4.3277 41 1 0.7126 -3.8017 -5.2750 42 1 -1.2805 -3.5693 -3.8478 43 1 -1.0309 -2.9690 -1.4728 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848381117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:36 Heat of formation + Delta-G solvation = 19.836519 kcal Electronic energy + Delta-G solvation = -26076.095269 eV Core-core repulsion = 22471.462682 eV Total energy + Delta-G solvation = -3604.632587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03680 -40.50394 -39.68970 -37.75704 -35.79637 -33.62916 -33.17580 -32.48364 -31.49106 -30.53265 -29.17484 -27.76565 -26.50123 -24.37915 -23.21384 -23.12216 -22.96065 -21.47744 -20.27224 -18.55365 -18.26016 -17.45696 -17.38589 -17.17518 -16.78436 -16.56594 -16.38142 -15.77065 -15.50171 -15.47878 -15.21245 -14.54649 -14.41269 -14.14582 -14.04399 -13.99295 -13.95811 -13.59791 -13.49071 -13.29100 -13.12388 -12.83661 -12.55464 -12.49597 -12.41022 -11.83427 -11.68595 -11.30696 -11.01564 -10.81986 -10.75288 -10.58003 -10.42957 -10.10512 -9.53202 -9.45513 -9.19630 -8.04148 -6.07044 0.07446 0.15843 0.78904 0.84324 1.36114 1.37602 1.44854 1.82604 1.88123 2.45512 2.74752 3.10468 3.18707 3.26300 3.35266 3.64842 3.86888 3.93671 4.24753 4.26278 4.34985 4.36698 4.38048 4.41071 4.47050 4.51088 4.55807 4.62725 4.67266 4.73698 4.84379 4.90697 4.92917 4.98000 5.09105 5.20715 5.36166 5.40476 5.52469 5.66493 5.67055 5.78085 5.84937 5.96228 6.17740 6.40719 6.47011 6.51551 6.95139 7.00597 7.37569 7.55496 9.05422 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.003601 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.407096 B = 7773.191089 C = 9258.204782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.022 3.978 3 Si 0.934 3.066 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.485 4.485 8 H 0.046 0.954 9 C 0.081 3.919 10 H 0.025 0.975 11 C -0.105 4.105 12 C 0.535 3.465 13 O -0.547 6.547 14 N -0.631 5.631 15 C 0.146 3.854 16 C -0.072 4.072 17 C -0.148 4.148 18 C 0.099 3.901 19 N -0.500 5.500 20 C 0.124 3.876 21 C -0.162 4.162 22 C 0.149 3.851 23 C -0.046 4.046 24 C -0.125 4.125 25 C -0.126 4.126 26 C -0.147 4.147 27 C -0.129 4.129 28 C -0.143 4.143 29 H 0.253 0.747 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.160 0.840 35 H 0.191 0.809 36 H 0.185 0.815 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.131 0.869 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.770 -16.109 4.265 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.523 4.523 8 H 0.065 0.935 9 C 0.061 3.939 10 H 0.043 0.957 11 C -0.145 4.145 12 C 0.326 3.674 13 O -0.422 6.422 14 N -0.368 5.368 15 C 0.023 3.977 16 C -0.080 4.080 17 C -0.167 4.167 18 C -0.057 4.057 19 N -0.209 5.209 20 C -0.033 4.033 21 C -0.164 4.164 22 C 0.026 3.974 23 C -0.047 4.047 24 C -0.143 4.143 25 C -0.144 4.144 26 C -0.165 4.165 27 C -0.147 4.147 28 C -0.162 4.162 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.178 0.822 35 H 0.208 0.792 36 H 0.202 0.798 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.135 0.865 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.149 0.851 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.758 -16.112 4.560 18.897 hybrid contribution -0.584 2.408 0.277 2.493 sum 8.174 -13.704 4.837 16.674 Atomic orbital electron populations 1.70051 1.07106 1.26344 1.52117 1.25491 0.95322 1.01759 0.95097 0.85925 0.78891 0.81051 0.77989 1.19930 1.21827 1.19725 1.20979 0.92183 0.91038 1.48140 0.93528 1.17632 0.96412 0.91875 0.87938 0.95711 1.21642 1.03293 1.00459 0.89123 1.20791 0.76516 0.81141 0.88972 1.90775 1.45570 1.27410 1.78469 1.48225 1.56303 1.25129 1.07179 1.20077 0.99558 0.96286 0.81808 1.20662 0.96581 0.95549 0.95239 1.21800 0.99494 0.99125 0.96319 1.23266 0.93472 0.89939 0.98993 1.67854 1.20718 1.32408 0.99871 1.22500 0.92442 0.93135 0.95186 1.21398 1.01304 0.97672 0.96030 1.20360 0.97335 0.85126 0.94583 1.20517 0.93040 0.93051 0.98053 1.21048 0.98313 1.00689 0.94286 1.21379 0.98237 0.99887 0.94898 1.21268 0.92280 1.02571 1.00337 1.21283 0.99635 1.00451 0.93326 1.21108 0.96876 1.01912 0.96288 0.93773 0.88256 0.88767 0.90539 0.90867 0.82223 0.79199 0.79798 0.88006 0.88249 0.86456 0.84080 0.83908 0.85125 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.38 12.85 21.45 0.28 -56.10 16 2 C 0.02 1.28 5.45 84.65 0.46 1.74 16 3 Si 0.93 46.45 29.54 68.60 2.03 48.47 16 4 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 6 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.49 -26.57 6.38 25.60 0.16 -26.40 16 8 H 0.05 2.52 7.82 -2.91 -0.02 2.49 16 9 C 0.08 3.93 1.68 -12.29 -0.02 3.90 16 10 H 0.02 1.43 6.95 -2.38 -0.02 1.42 16 11 C -0.11 -4.01 4.20 29.85 0.13 -3.89 16 12 C 0.54 21.98 7.62 87.66 0.67 22.65 16 13 O -0.55 -28.91 15.36 -3.04 -0.05 -28.96 16 14 N -0.63 -19.74 3.34 -830.02 -2.77 -22.51 16 15 C 0.15 4.09 6.90 85.52 0.59 4.68 16 16 C -0.07 -1.58 6.29 -19.83 -0.12 -1.71 16 17 C -0.15 -2.49 10.12 22.35 0.23 -2.26 16 18 C 0.10 1.56 11.19 84.69 0.95 2.50 16 19 N -0.50 -9.57 10.36 -195.72 -2.03 -11.60 16 20 C 0.12 2.18 11.19 84.70 0.95 3.13 16 21 C -0.16 -3.28 6.27 -19.86 -0.12 -3.41 16 22 C 0.15 3.22 6.54 85.56 0.56 3.78 16 23 C -0.05 -2.01 4.77 -19.87 -0.09 -2.11 16 24 C -0.13 -4.74 8.86 22.27 0.20 -4.54 16 25 C -0.13 -3.97 10.05 22.27 0.22 -3.74 16 26 C -0.15 -4.44 10.05 22.27 0.22 -4.22 16 27 C -0.13 -4.44 10.05 22.27 0.22 -4.22 16 28 C -0.14 -6.07 9.67 22.27 0.22 -5.85 16 29 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.10 3.34 7.76 -2.39 -0.02 3.32 16 31 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.19 1.67 8.06 -2.91 -0.02 1.64 16 36 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.12 4.24 7.75 -2.91 -0.02 4.22 16 40 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 41 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 42 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 43 H 0.09 4.20 7.95 -2.91 -0.02 4.18 16 Total: -1.00 -76.32 365.63 3.87 -72.45 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 1.01 Total: 18.22 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 5.41 Total: -19.96 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -4.52 Total: -90.21 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.05 Total: -28.96 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -76.32 3.87 -72.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848381117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.282 kcal (2) G-P(sol) polarization free energy of solvation -76.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds