Wall clock time and date at job start Tue Mar 31 2020 13:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36067 * 116.99997 * 2 1 4 4 C 1.38554 * 120.00536 * 359.71970 * 3 2 1 5 5 C 1.38188 * 120.07225 * 179.76917 * 4 3 2 6 6 C 1.38857 * 120.07103 * 0.51182 * 5 4 3 7 7 N 1.40086 * 119.99690 * 179.76872 * 6 5 4 8 8 C 1.37620 * 119.99658 * 322.53798 * 7 6 5 9 9 N 1.30347 * 120.00337 * 354.28380 * 8 7 6 10 10 N 1.37516 * 119.99933 * 174.28400 * 8 7 6 11 11 C 1.46494 * 120.00101 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.46932 * 179.97438 * 11 10 8 13 13 O 1.21294 * 120.00462 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99915 * 180.02562 * 12 11 10 15 15 C 1.37102 * 120.00092 * 180.02562 * 14 12 11 16 16 H 1.07999 * 119.99668 * 359.97438 * 15 14 12 17 17 C 1.38945 * 119.99817 * 179.97438 * 15 14 12 18 18 N 1.31417 * 119.99705 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00223 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47389 * 90.00257 * 19 17 15 21 21 H 1.48506 * 109.46953 * 210.00018 * 19 17 15 22 22 H 1.48497 * 109.47241 * 329.99810 * 19 17 15 23 23 C 1.38812 * 120.00617 * 359.74228 * 6 5 4 24 24 C 1.38509 * 119.92578 * 0.02562 * 23 6 5 25 25 O 1.35996 * 120.03418 * 179.97438 * 24 23 6 26 26 C 1.42904 * 116.99626 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.47191 * 300.00093 * 1 2 3 28 28 H 1.08996 * 109.47161 * 60.00576 * 1 2 3 29 29 H 1.09007 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.95650 * 0.02562 * 4 3 2 31 31 H 1.07992 * 119.96591 * 180.25363 * 5 4 3 32 32 H 0.96990 * 120.00081 * 142.54067 * 7 6 5 33 33 H 0.97001 * 120.00501 * 180.02562 * 9 8 7 34 34 H 0.97003 * 119.99705 * 0.02562 * 10 8 7 35 35 H 1.08995 * 109.47569 * 299.99966 * 11 10 8 36 36 H 1.09000 * 109.47449 * 60.00417 * 11 10 8 37 37 H 0.97001 * 120.00036 * 359.97438 * 14 12 11 38 38 H 0.97004 * 119.99905 * 179.97438 * 18 17 15 39 39 H 1.07991 * 120.03868 * 180.02562 * 23 6 5 40 40 H 1.09006 * 109.46677 * 179.97438 * 26 25 24 41 41 H 1.08995 * 109.47521 * 299.99733 * 26 25 24 42 42 H 1.09006 * 109.46978 * 60.00493 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2124 0.0000 4 6 1.2922 2.3744 -0.0059 5 6 1.9181 3.6064 -0.0011 6 6 3.3046 3.6825 -0.0011 7 7 3.9375 4.9322 -0.0011 8 6 3.4043 5.9734 -0.7260 9 7 2.3757 5.7692 -1.5002 10 7 3.9567 7.2294 -0.6337 11 6 3.3896 8.3376 -1.4058 12 6 4.1714 9.5955 -1.1276 13 8 5.1104 9.5689 -0.3602 14 7 3.8273 10.7503 -1.7315 15 6 4.5389 11.8946 -1.4788 16 1 5.3749 11.8707 -0.7955 17 6 4.1845 13.0849 -2.1018 18 7 4.8662 14.1819 -1.8592 19 14 2.7389 13.1259 -3.2841 20 1 1.4950 13.4368 -2.5347 21 1 2.9708 14.1709 -4.3135 22 1 2.6016 11.8028 -3.9442 23 6 4.0636 2.5202 -0.0005 24 6 3.4363 1.2853 -0.0005 25 8 4.1777 0.1452 -0.0004 26 6 5.5988 0.2956 0.0001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2138 2.3172 -0.0100 31 1 1.3283 4.5111 -0.0015 32 1 4.7514 5.0637 0.5098 33 1 2.0001 6.5030 -2.0114 34 1 4.7225 7.3813 -0.0579 35 1 3.4425 8.1042 -2.4692 36 1 2.3489 8.4860 -1.1178 37 1 3.0766 10.7716 -2.3455 38 1 4.6190 15.0128 -2.2944 39 1 5.1419 2.5788 -0.0001 40 1 6.0682 -0.6882 0.0005 41 1 5.9065 0.8450 -0.8896 42 1 5.9057 0.8446 0.8904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849027976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:53 Heat of formation + Delta-G solvation = -31.043376 kcal Electronic energy + Delta-G solvation = -25911.815527 eV Core-core repulsion = 21894.127359 eV Total energy + Delta-G solvation = -4017.688168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73631 -39.29700 -38.55412 -38.39439 -36.65322 -34.38470 -33.82955 -31.89182 -31.30958 -30.31698 -29.52730 -27.83113 -27.42106 -26.65587 -24.42896 -22.62667 -22.14130 -20.40525 -19.65902 -18.80111 -18.77430 -18.11464 -17.57043 -16.67552 -16.23537 -16.19073 -15.67789 -15.39337 -15.20082 -15.05967 -14.99298 -14.74163 -14.62345 -14.27023 -13.79734 -13.24408 -13.07841 -12.81772 -12.77532 -12.59059 -12.36259 -12.25345 -12.04517 -11.62638 -11.35482 -11.34876 -11.27375 -11.05800 -10.72004 -10.13781 -9.78166 -9.50723 -9.31067 -8.86263 -8.65074 -8.39115 -8.12469 -7.42248 -6.48016 -4.01225 1.17448 1.40062 2.59092 2.92014 2.96926 3.02863 3.06394 3.12495 3.18231 3.45605 3.73412 3.91654 3.96770 4.44301 4.65578 4.81608 4.86826 4.95794 4.99137 5.05178 5.09169 5.17519 5.19533 5.28534 5.31979 5.32899 5.36982 5.58116 5.59369 5.60773 5.95785 6.26506 6.28033 6.45948 6.63551 6.89288 7.01258 7.27774 7.37847 7.50140 7.90074 8.04679 8.36541 8.73759 8.76961 9.21123 9.53848 10.63979 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026440 B = 0.002096 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.747258 B =13353.726580 C =14150.194308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.074 3.926 4 C -0.154 4.154 5 C -0.099 4.099 6 C 0.192 3.808 7 N -0.666 5.666 8 C 0.634 3.366 9 N -0.819 5.819 10 N -0.750 5.750 11 C 0.118 3.882 12 C 0.439 3.561 13 O -0.576 6.576 14 N -0.575 5.575 15 C -0.312 4.312 16 H 0.122 0.878 17 C 0.045 3.955 18 N -0.872 5.872 19 Si 0.880 3.120 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.268 1.268 23 C -0.206 4.206 24 C 0.114 3.886 25 O -0.307 6.307 26 C 0.027 3.973 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.412 0.588 33 H 0.340 0.660 34 H 0.404 0.596 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.374 0.626 38 H 0.276 0.724 39 H 0.135 0.865 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.762 -25.489 2.579 26.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.028 3.972 4 C -0.173 4.173 5 C -0.120 4.120 6 C 0.096 3.904 7 N -0.301 5.301 8 C 0.267 3.733 9 N -0.468 5.468 10 N -0.397 5.397 11 C -0.011 4.011 12 C 0.225 3.775 13 O -0.460 6.460 14 N -0.212 5.212 15 C -0.440 4.440 16 H 0.139 0.861 17 C -0.159 4.159 18 N -0.511 5.511 19 Si 0.706 3.294 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.193 1.193 23 C -0.228 4.228 24 C 0.068 3.932 25 O -0.221 6.221 26 C -0.069 4.069 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.249 0.751 33 H 0.157 0.843 34 H 0.242 0.758 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.207 0.793 38 H 0.087 0.913 39 H 0.153 0.847 40 H 0.116 0.884 41 H 0.073 0.927 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.787 -26.378 2.691 27.369 hybrid contribution -0.161 1.863 -0.763 2.020 sum -6.948 -24.515 1.927 25.553 Atomic orbital electron populations 1.23016 0.78944 1.03601 1.01201 1.86145 1.20674 1.26070 1.89607 1.18153 0.88974 0.85163 1.04933 1.20915 0.99798 0.90966 1.05630 1.20860 0.93073 0.97811 1.00286 1.16974 0.91265 0.82866 0.99272 1.41172 1.29574 1.07225 1.52111 1.18599 0.87924 0.79090 0.87700 1.69739 1.16969 1.38447 1.21648 1.45062 1.37570 1.05614 1.51459 1.20832 0.97616 0.86496 0.96124 1.19466 0.87756 0.84294 0.86012 1.90550 1.31273 1.84932 1.39254 1.42111 1.29937 1.08590 1.40579 1.19433 1.13673 0.83999 1.26892 0.86082 1.25082 0.97982 0.95065 0.97802 1.69619 1.39222 0.99863 1.42356 0.86656 0.82697 0.78705 0.81308 1.19357 1.19907 1.19296 1.20690 1.00062 0.90187 1.11900 1.17810 0.88052 0.85338 1.01955 1.86167 1.18539 1.28173 1.89218 1.23047 0.78870 1.03673 1.01285 0.92872 0.92776 0.88549 0.84771 0.83985 0.75104 0.84251 0.75850 0.90404 0.90365 0.79296 0.91298 0.84742 0.88382 0.92704 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.63 10.28 -34.56 -0.36 -3.99 16 3 C 0.07 0.90 6.70 -39.13 -0.26 0.63 16 4 C -0.15 -1.71 9.03 -39.48 -0.36 -2.07 16 5 C -0.10 -1.22 8.57 -39.37 -0.34 -1.56 16 6 C 0.19 2.32 6.20 -83.64 -0.52 1.80 16 7 N -0.67 -7.72 5.45 -11.12 -0.06 -7.78 16 8 C 0.63 8.73 8.42 -319.84 -2.69 6.03 16 9 N -0.82 -11.82 11.07 30.18 0.33 -11.49 16 10 N -0.75 -10.91 5.64 -62.93 -0.35 -11.27 16 11 C 0.12 1.83 5.50 -5.20 -0.03 1.80 16 12 C 0.44 9.19 7.85 -10.98 -0.09 9.11 16 13 O -0.58 -14.16 15.24 5.54 0.08 -14.08 16 14 N -0.57 -12.80 5.09 -10.96 -0.06 -12.85 16 15 C -0.31 -8.38 10.16 -14.93 -0.15 -8.53 16 16 H 0.12 3.73 7.39 -52.49 -0.39 3.35 16 17 C 0.05 1.19 5.50 -17.47 -0.10 1.09 16 18 N -0.87 -24.44 13.96 55.50 0.77 -23.67 16 19 Si 0.88 18.41 27.74 -169.99 -4.71 13.70 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.27 -5.06 6.52 56.52 0.37 -4.69 16 23 C -0.21 -2.27 8.95 -39.27 -0.35 -2.62 16 24 C 0.11 1.39 6.70 -39.14 -0.26 1.12 16 25 O -0.31 -3.57 10.28 -34.34 -0.35 -3.92 16 26 C 0.03 0.19 9.81 101.05 0.99 1.19 16 27 H 0.05 0.32 7.67 -51.93 -0.40 -0.07 16 28 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 29 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.13 1.18 6.29 -52.49 -0.33 0.85 16 31 H 0.14 1.86 6.62 -52.49 -0.35 1.51 16 32 H 0.41 3.80 8.93 -40.82 -0.36 3.44 16 33 H 0.34 4.70 7.15 -40.82 -0.29 4.40 16 34 H 0.40 6.10 7.54 -40.82 -0.31 5.79 16 35 H 0.08 1.09 7.97 -51.93 -0.41 0.68 16 36 H 0.08 1.07 7.97 -51.93 -0.41 0.66 16 37 H 0.37 7.25 5.76 -40.82 -0.24 7.01 16 38 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.13 1.18 6.29 -52.49 -0.33 0.85 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 42 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -33.16 355.84 -7.53 -40.69 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -5.03 Total: 20.11 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -3.16 Total: 9.19 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: 0.64 Total: -67.06 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.62 Total: -21.99 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.71 Total: 13.70 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.16 -7.53 -40.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849027976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.644 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds