Wall clock time and date at job start Tue Mar 31 2020 13:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36067 * 116.99997 * 2 1 4 4 C 1.38554 * 120.00536 * 359.71970 * 3 2 1 5 5 C 1.38188 * 120.07225 * 179.76917 * 4 3 2 6 6 C 1.38857 * 120.07103 * 0.51182 * 5 4 3 7 7 N 1.40086 * 119.99690 * 179.76872 * 6 5 4 8 8 C 1.37620 * 119.99658 * 322.53798 * 7 6 5 9 9 N 1.30347 * 120.00337 * 354.28380 * 8 7 6 10 10 N 1.37516 * 119.99933 * 174.28400 * 8 7 6 11 11 C 1.46494 * 120.00101 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.46932 * 179.97438 * 11 10 8 13 13 O 1.21294 * 120.00462 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99915 * 180.02562 * 12 11 10 15 15 C 1.37102 * 120.00092 * 180.02562 * 14 12 11 16 16 H 1.07999 * 119.99668 * 359.97438 * 15 14 12 17 17 C 1.38945 * 119.99817 * 179.97438 * 15 14 12 18 18 N 1.31417 * 119.99705 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00223 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47389 * 90.00257 * 19 17 15 21 21 H 1.48506 * 109.46953 * 210.00018 * 19 17 15 22 22 H 1.48497 * 109.47241 * 329.99810 * 19 17 15 23 23 C 1.38812 * 120.00617 * 359.74228 * 6 5 4 24 24 C 1.38509 * 119.92578 * 0.02562 * 23 6 5 25 25 O 1.35996 * 120.03418 * 179.97438 * 24 23 6 26 26 C 1.42904 * 116.99626 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.47191 * 300.00093 * 1 2 3 28 28 H 1.08996 * 109.47161 * 60.00576 * 1 2 3 29 29 H 1.09007 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.95650 * 0.02562 * 4 3 2 31 31 H 1.07992 * 119.96591 * 180.25363 * 5 4 3 32 32 H 0.96990 * 120.00081 * 142.54067 * 7 6 5 33 33 H 0.97001 * 120.00501 * 180.02562 * 9 8 7 34 34 H 0.97003 * 119.99705 * 0.02562 * 10 8 7 35 35 H 1.08995 * 109.47569 * 299.99966 * 11 10 8 36 36 H 1.09000 * 109.47449 * 60.00417 * 11 10 8 37 37 H 0.97001 * 120.00036 * 359.97438 * 14 12 11 38 38 H 0.97004 * 119.99905 * 179.97438 * 18 17 15 39 39 H 1.07991 * 120.03868 * 180.02562 * 23 6 5 40 40 H 1.09006 * 109.46677 * 179.97438 * 26 25 24 41 41 H 1.08995 * 109.47521 * 299.99733 * 26 25 24 42 42 H 1.09006 * 109.46978 * 60.00493 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2124 0.0000 4 6 1.2922 2.3744 -0.0059 5 6 1.9181 3.6064 -0.0011 6 6 3.3046 3.6825 -0.0011 7 7 3.9375 4.9322 -0.0011 8 6 3.4043 5.9734 -0.7260 9 7 2.3757 5.7692 -1.5002 10 7 3.9567 7.2294 -0.6337 11 6 3.3896 8.3376 -1.4058 12 6 4.1714 9.5955 -1.1276 13 8 5.1104 9.5689 -0.3602 14 7 3.8273 10.7503 -1.7315 15 6 4.5389 11.8946 -1.4788 16 1 5.3749 11.8707 -0.7955 17 6 4.1845 13.0849 -2.1018 18 7 4.8662 14.1819 -1.8592 19 14 2.7389 13.1259 -3.2841 20 1 1.4950 13.4368 -2.5347 21 1 2.9708 14.1709 -4.3135 22 1 2.6016 11.8028 -3.9442 23 6 4.0636 2.5202 -0.0005 24 6 3.4363 1.2853 -0.0005 25 8 4.1777 0.1452 -0.0004 26 6 5.5988 0.2956 0.0001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2138 2.3172 -0.0100 31 1 1.3283 4.5111 -0.0015 32 1 4.7514 5.0637 0.5098 33 1 2.0001 6.5030 -2.0114 34 1 4.7225 7.3813 -0.0579 35 1 3.4425 8.1042 -2.4692 36 1 2.3489 8.4860 -1.1178 37 1 3.0766 10.7716 -2.3455 38 1 4.6190 15.0128 -2.2944 39 1 5.1419 2.5788 -0.0001 40 1 6.0682 -0.6882 0.0005 41 1 5.9065 0.8450 -0.8896 42 1 5.9057 0.8446 0.8904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849027976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:52 Heat of formation + Delta-G solvation = -54.864526 kcal Electronic energy + Delta-G solvation = -25912.848490 eV Core-core repulsion = 21894.127359 eV Total energy + Delta-G solvation = -4018.721130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56845 -40.70291 -39.67082 -39.30686 -37.67746 -36.15945 -34.95081 -33.84405 -32.41172 -31.15399 -30.40576 -29.08161 -28.00721 -27.57321 -26.13575 -23.56051 -22.96919 -21.61489 -21.22407 -20.49069 -19.66309 -19.26663 -18.50503 -17.64750 -17.31136 -17.17716 -16.94072 -16.61645 -16.53090 -16.06838 -16.06010 -15.71190 -15.60306 -15.31720 -14.95256 -14.88975 -14.32220 -14.11762 -14.01208 -13.62325 -13.57991 -13.19858 -12.99167 -12.88496 -12.45763 -12.29016 -12.09527 -12.01160 -11.99988 -11.88559 -11.58780 -10.71730 -10.46540 -10.34224 -10.28894 -9.52177 -9.19790 -8.46569 -8.31402 -6.09209 0.32481 0.50892 1.30173 1.33741 1.43623 1.55890 1.77745 1.99810 2.19945 2.41341 2.47112 2.68452 2.85669 3.05816 3.09549 3.89318 3.94746 4.13385 4.19499 4.24937 4.35851 4.36971 4.39585 4.44233 4.47686 4.48758 4.55450 4.76224 4.78062 4.81296 5.00145 5.33953 5.39134 5.43587 5.49469 5.69820 5.87002 6.02786 6.17795 6.39002 6.48033 6.70642 6.77395 6.90940 7.27835 7.74354 7.77841 8.69884 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026440 B = 0.002096 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.747258 B =13353.726580 C =14150.194308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.061 3.939 4 C -0.151 4.151 5 C -0.111 4.111 6 C 0.179 3.821 7 N -0.658 5.658 8 C 0.635 3.365 9 N -0.828 5.828 10 N -0.753 5.753 11 C 0.132 3.868 12 C 0.445 3.555 13 O -0.616 6.616 14 N -0.577 5.577 15 C -0.332 4.332 16 H 0.061 0.939 17 C -0.011 4.011 18 N -0.927 5.927 19 Si 0.962 3.038 20 H -0.256 1.256 21 H -0.276 1.276 22 H -0.229 1.229 23 C -0.201 4.201 24 C 0.101 3.899 25 O -0.328 6.328 26 C 0.018 3.982 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.116 0.884 30 H 0.155 0.845 31 H 0.134 0.866 32 H 0.422 0.578 33 H 0.343 0.657 34 H 0.401 0.599 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.393 0.607 38 H 0.281 0.719 39 H 0.154 0.846 40 H 0.117 0.883 41 H 0.060 0.940 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.898 -27.374 1.243 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.015 3.985 4 C -0.170 4.170 5 C -0.132 4.132 6 C 0.083 3.917 7 N -0.294 5.294 8 C 0.268 3.732 9 N -0.478 5.478 10 N -0.401 5.401 11 C 0.003 3.997 12 C 0.232 3.768 13 O -0.502 6.502 14 N -0.217 5.217 15 C -0.461 4.461 16 H 0.079 0.921 17 C -0.211 4.211 18 N -0.566 5.566 19 Si 0.781 3.219 20 H -0.180 1.180 21 H -0.201 1.201 22 H -0.152 1.152 23 C -0.223 4.223 24 C 0.055 3.945 25 O -0.242 6.242 26 C -0.076 4.076 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.172 0.828 31 H 0.152 0.848 32 H 0.261 0.739 33 H 0.161 0.839 34 H 0.237 0.763 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.229 0.771 38 H 0.091 0.909 39 H 0.172 0.828 40 H 0.135 0.865 41 H 0.078 0.922 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.926 -28.311 1.364 29.716 hybrid contribution 0.593 2.305 -0.234 2.392 sum -8.333 -26.006 1.130 27.331 Atomic orbital electron populations 1.23299 0.76909 1.05275 1.02077 1.86117 1.22907 1.26057 1.89591 1.18412 0.89427 0.85667 1.04980 1.21086 1.00824 0.90266 1.04868 1.20884 0.93281 0.97908 1.01121 1.17110 0.91455 0.83134 0.99995 1.41137 1.29798 1.06697 1.51794 1.18677 0.87740 0.79049 0.87760 1.69791 1.17239 1.38654 1.22079 1.45050 1.37633 1.05825 1.51558 1.20763 0.97617 0.83566 0.97731 1.20502 0.86889 0.85486 0.83892 1.90540 1.33162 1.85924 1.40590 1.41900 1.30423 1.07683 1.41674 1.19003 1.13432 0.86549 1.27122 0.92132 1.26124 1.01508 0.93787 0.99650 1.69792 1.41806 1.00896 1.44151 0.85409 0.77752 0.80511 0.78199 1.18047 1.20075 1.15191 1.20822 1.01007 0.89468 1.11016 1.18074 0.88498 0.85856 1.02098 1.86141 1.20497 1.28338 1.89203 1.23321 0.76941 1.05283 1.02092 0.91770 0.92034 0.86616 0.82791 0.84795 0.73937 0.83949 0.76269 0.87867 0.87589 0.77118 0.90941 0.82830 0.86474 0.92154 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.42 10.28 -80.35 -0.83 -8.24 16 3 C 0.06 1.43 6.70 22.56 0.15 1.58 16 4 C -0.15 -3.16 9.03 22.33 0.20 -2.96 16 5 C -0.11 -2.59 8.57 22.41 0.19 -2.40 16 6 C 0.18 4.07 6.20 38.11 0.24 4.30 16 7 N -0.66 -14.22 5.45 -189.10 -1.03 -15.25 16 8 C 0.63 16.18 8.42 260.45 2.19 18.37 16 9 N -0.83 -21.91 11.07 -58.42 -0.65 -22.56 16 10 N -0.75 -20.50 5.64 -353.02 -1.99 -22.49 16 11 C 0.13 3.70 5.50 85.63 0.47 4.17 16 12 C 0.44 18.27 7.85 87.66 0.69 18.96 16 13 O -0.62 -30.90 15.24 -3.07 -0.05 -30.95 16 14 N -0.58 -25.18 5.09 -306.98 -1.56 -26.75 16 15 C -0.33 -18.41 10.16 84.04 0.85 -17.56 16 16 H 0.06 4.01 7.39 -2.91 -0.02 3.99 16 17 C -0.01 -0.57 5.50 84.92 0.47 -0.11 16 18 N -0.93 -53.76 13.96 21.66 0.30 -53.45 16 19 Si 0.96 36.71 27.74 68.60 1.90 38.61 16 20 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 21 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.23 -7.23 6.52 99.48 0.65 -6.58 16 23 C -0.20 -4.14 8.95 22.47 0.20 -3.94 16 24 C 0.10 2.34 6.70 22.55 0.15 2.49 16 25 O -0.33 -7.29 10.28 -79.54 -0.82 -8.10 16 26 C 0.02 0.23 9.81 113.37 1.11 1.35 16 27 H 0.06 0.67 7.67 -2.39 -0.02 0.65 16 28 H 0.06 0.68 7.65 -2.39 -0.02 0.67 16 29 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.15 2.42 6.29 -2.91 -0.02 2.41 16 31 H 0.13 3.33 6.62 -2.91 -0.02 3.31 16 32 H 0.42 7.17 8.93 -92.72 -0.83 6.34 16 33 H 0.34 8.40 7.15 -92.71 -0.66 7.74 16 34 H 0.40 11.71 7.54 -92.71 -0.70 11.01 16 35 H 0.10 2.47 7.97 -2.39 -0.02 2.45 16 36 H 0.11 2.48 7.97 -2.39 -0.02 2.47 16 37 H 0.39 14.03 5.76 -92.71 -0.53 13.50 16 38 H 0.28 14.89 8.31 -92.71 -0.77 14.12 16 39 H 0.15 2.40 6.29 -2.92 -0.02 2.38 16 40 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 42 H 0.07 0.69 7.66 -2.38 -0.02 0.67 16 Total: -1.00 -75.90 355.84 1.66 -74.25 By element: Atomic # 1 Polarization: 50.98 SS G_CDS: -1.66 Total: 49.32 kcal Atomic # 6 Polarization: 17.58 SS G_CDS: 8.03 Total: 25.61 kcal Atomic # 7 Polarization: -135.57 SS G_CDS: -4.93 Total: -140.50 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -1.69 Total: -47.30 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 1.90 Total: 38.61 kcal Total: -75.90 1.66 -74.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849027976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.381 kcal (2) G-P(sol) polarization free energy of solvation -75.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds