Wall clock time and date at job start Tue Mar 31 2020 13:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99709 * 2 1 4 4 H 1.48500 * 109.47245 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47535 * 240.00371 * 3 2 1 6 6 H 1.48503 * 109.46986 * 120.00217 * 3 2 1 7 7 C 1.37872 * 120.00543 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00014 * 17.97852 * 7 2 1 9 9 C 1.50704 * 120.00158 * 197.97965 * 7 2 1 10 10 H 1.08995 * 109.49989 * 305.51473 * 9 7 2 11 11 C 1.53117 * 109.50449 * 65.59658 * 9 7 2 12 12 C 1.53119 * 109.16143 * 177.59193 * 11 9 7 13 13 C 1.53035 * 109.27848 * 302.35140 * 12 11 9 14 14 N 1.46847 * 109.52808 * 59.17710 * 13 12 11 15 15 C 1.46894 * 111.00094 * 174.15636 * 14 13 12 16 16 N 1.46495 * 109.47701 * 276.06451 * 15 14 13 17 17 C 1.33894 * 120.92718 * 98.34229 * 16 15 14 18 18 O 1.21832 * 127.07866 * 359.97438 * 17 16 15 19 19 S 1.72209 * 105.83508 * 179.97438 * 17 16 15 20 20 C 1.76560 * 94.66505 * 0.29754 * 19 17 16 21 21 C 1.33305 * 106.53784 * 359.82151 * 20 19 17 22 22 C 1.52339 * 121.76030 * 180.02562 * 21 20 19 23 23 C 1.52945 * 108.87037 * 341.89691 * 22 21 20 24 24 C 1.53177 * 109.57950 * 51.74663 * 23 22 21 25 25 C 1.50348 * 126.97458 * 179.84935 * 20 19 17 26 26 C 1.46852 * 111.19440 * 298.25866 * 14 13 12 27 27 H 0.96998 * 119.99575 * 174.95601 * 1 2 3 28 28 H 1.08991 * 109.52211 * 297.50605 * 11 9 7 29 29 H 1.09001 * 109.52060 * 57.62910 * 11 9 7 30 30 H 1.09001 * 109.49816 * 62.29317 * 12 11 9 31 31 H 1.08997 * 109.50171 * 182.36464 * 12 11 9 32 32 H 1.09003 * 109.46069 * 179.19503 * 13 12 11 33 33 H 1.09003 * 109.46276 * 299.16942 * 13 12 11 34 34 H 1.09003 * 109.46788 * 36.06860 * 15 14 13 35 35 H 1.09000 * 109.46876 * 156.06056 * 15 14 13 36 36 H 1.09002 * 109.57641 * 101.71614 * 22 21 20 37 37 H 1.09008 * 109.57265 * 222.07932 * 22 21 20 38 38 H 1.09005 * 109.45210 * 291.71230 * 23 22 21 39 39 H 1.09006 * 109.43934 * 171.76738 * 23 22 21 40 40 H 1.09000 * 109.58903 * 170.39858 * 24 23 22 41 41 H 1.08988 * 109.59186 * 49.96165 * 24 23 22 42 42 H 1.09000 * 109.61740 * 284.25728 * 25 20 19 43 43 H 1.08997 * 109.62211 * 44.81229 * 25 20 19 44 44 H 1.08998 * 109.46213 * 301.72214 * 26 14 13 45 45 H 1.08998 * 109.45462 * 181.75939 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6966 -1.2125 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 1.5043 -2.1063 -0.2896 9 6 3.4565 -1.2259 0.4023 10 1 4.0179 -0.5146 -0.2034 11 6 3.5850 -0.8512 1.8814 12 6 5.0556 -0.9445 2.2975 13 6 5.5681 -2.3610 2.0276 14 7 5.4244 -2.6712 0.5995 15 6 6.0329 -3.9692 0.2789 16 7 7.4700 -3.7932 0.0561 17 6 8.3542 -4.0560 1.0267 18 8 8.1121 -4.4501 2.1538 19 16 9.9038 -3.7221 0.3537 20 6 9.2737 -3.2299 -1.2205 21 6 7.9476 -3.3474 -1.1520 22 6 7.0504 -3.0080 -2.3355 23 6 7.8367 -2.1408 -3.3198 24 6 9.1697 -2.8193 -3.6502 25 6 10.0702 -2.7685 -2.4092 26 6 4.0154 -2.6342 0.1874 27 1 -0.4849 -0.8368 -0.0739 28 1 3.2278 0.1675 2.0314 29 1 2.9907 -1.5380 2.4841 30 1 5.6427 -0.2291 1.7217 31 1 5.1480 -0.7196 3.3600 32 1 6.6190 -2.4268 2.3096 33 1 4.9894 -3.0746 2.6142 34 1 5.8755 -4.6589 1.1082 35 1 5.5722 -4.3736 -0.6224 36 1 6.7348 -3.9268 -2.8298 37 1 6.1752 -2.4608 -1.9851 38 1 8.0270 -1.1653 -2.8723 39 1 7.2575 -2.0139 -4.2344 40 1 9.6528 -2.2939 -4.4740 41 1 8.9919 -3.8574 -3.9302 42 1 10.4116 -1.7462 -2.2466 43 1 10.9281 -3.4254 -2.5523 44 1 3.4440 -3.3465 0.7827 45 1 3.9385 -2.8985 -0.8672 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853523905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:06 Heat of formation + Delta-G solvation = -18.437853 kcal Electronic energy + Delta-G solvation = -26228.540591 eV Core-core repulsion = 22757.692254 eV Total energy + Delta-G solvation = -3470.848337 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07596 -38.41597 -38.20120 -35.94835 -33.75034 -32.19867 -31.03590 -30.32426 -29.66475 -27.10693 -24.70217 -23.89319 -23.47185 -22.34451 -21.60393 -20.86614 -19.22376 -18.87438 -18.23996 -17.60216 -16.68633 -16.59247 -15.52516 -15.27821 -14.84783 -14.65980 -14.15324 -14.03742 -13.91753 -13.64014 -13.61053 -13.27499 -13.11275 -12.86512 -12.78333 -12.44152 -12.08454 -11.94381 -11.78773 -11.37410 -11.22719 -11.05939 -10.97000 -10.75233 -10.59183 -10.53727 -10.16936 -10.05001 -9.94527 -9.72323 -9.52419 -9.32673 -8.81417 -8.22537 -8.17033 -7.85260 -6.49794 -4.11052 0.96236 1.36340 1.74277 2.16476 2.78036 3.37341 3.41509 3.59621 4.09780 4.37134 4.46377 4.62036 4.65689 4.79765 4.82339 4.98988 5.17617 5.21533 5.26826 5.30823 5.40492 5.46630 5.52719 5.59723 5.64836 5.74394 5.79710 5.83982 5.89523 5.92867 6.01750 6.09931 6.16922 6.22052 6.31155 6.41032 6.52439 6.74457 6.75833 6.88427 7.18479 7.25606 7.32947 7.40066 7.52614 8.11723 8.32602 8.85311 9.57522 10.90512 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.004214 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.954409 B = 6643.540577 C = 7606.850346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.033 3.967 3 Si 1.046 2.954 4 H -0.288 1.288 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.601 4.601 8 H 0.053 0.947 9 C 0.031 3.969 10 H 0.029 0.971 11 C -0.125 4.125 12 C -0.118 4.118 13 C 0.065 3.935 14 N -0.552 5.552 15 C 0.263 3.737 16 N -0.521 5.521 17 C 0.487 3.513 18 O -0.481 6.481 19 S -0.013 6.013 20 C -0.222 4.222 21 C 0.129 3.871 22 C -0.061 4.061 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.027 4.027 26 C 0.081 3.919 27 H 0.267 0.733 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.032 0.968 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.029 0.971 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.441 -6.463 -6.426 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.172 4.172 3 Si 0.875 3.125 4 H -0.214 1.214 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.639 4.639 8 H 0.072 0.928 9 C 0.011 3.989 10 H 0.047 0.953 11 C -0.163 4.163 12 C -0.156 4.156 13 C -0.063 4.063 14 N -0.278 5.278 15 C 0.048 3.952 16 N -0.241 5.241 17 C 0.168 3.832 18 O -0.362 6.362 19 S 0.232 5.768 20 C -0.341 4.341 21 C 0.018 3.982 22 C -0.100 4.100 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.066 4.066 26 C -0.045 4.045 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.047 0.953 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 20.526 -4.844 -5.310 21.748 hybrid contribution -1.585 -2.297 0.138 2.795 sum 18.940 -7.142 -5.172 20.892 Atomic orbital electron populations 1.70870 1.07013 1.30829 1.45326 1.25732 0.96048 1.02440 0.92956 0.84020 0.75314 0.75778 0.77373 1.21384 1.20941 1.19973 1.21907 0.94851 0.96161 1.51019 0.92827 1.18976 0.96515 0.91267 0.92135 0.95303 1.22130 0.92674 1.01859 0.99607 1.21661 0.98785 0.95350 0.99779 1.22055 0.99868 0.97537 0.86801 1.61759 1.19193 1.27966 1.18860 1.22221 0.78253 0.92364 1.02389 1.46320 1.09366 1.57727 1.10712 1.21323 0.90496 0.83616 0.87719 1.90953 1.79015 1.49684 1.16524 1.84792 1.10602 1.72579 1.08809 1.23465 0.94431 1.17050 0.99203 1.20140 0.93475 0.97313 0.87247 1.20801 0.97518 1.01038 0.90680 1.21527 0.95845 0.99162 0.98885 1.21669 0.95658 1.01512 0.96683 1.19912 0.96450 1.01182 0.89100 1.22154 0.82901 1.00461 0.99027 0.92305 0.91897 0.93172 0.92041 0.92710 0.92022 0.94945 0.90842 0.88356 0.89775 0.88050 0.90915 0.90470 0.90784 0.91380 0.90288 0.90495 0.95276 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.21 13.70 55.43 0.76 -26.45 16 2 C 0.03 0.93 5.34 -17.82 -0.10 0.84 16 3 Si 1.05 24.70 26.41 -169.99 -4.49 20.21 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.02 5.56 56.52 0.31 -5.70 16 7 C -0.60 -16.08 8.82 -34.44 -0.30 -16.38 16 8 H 0.05 1.54 7.99 -52.49 -0.42 1.12 16 9 C 0.03 0.69 1.84 -91.69 -0.17 0.52 16 10 H 0.03 0.67 6.80 -51.93 -0.35 0.32 16 11 C -0.12 -2.67 4.96 -26.61 -0.13 -2.80 16 12 C -0.12 -2.15 6.09 -26.65 -0.16 -2.31 16 13 C 0.07 1.14 5.30 -3.83 -0.02 1.12 16 14 N -0.55 -9.23 4.56 -238.58 -1.09 -10.31 16 15 C 0.26 3.77 4.88 -63.33 -0.31 3.46 16 16 N -0.52 -7.33 2.86 -119.56 -0.34 -7.67 16 17 C 0.49 7.57 7.59 53.66 0.41 7.98 16 18 O -0.48 -8.77 16.72 5.07 0.08 -8.69 16 19 S -0.01 -0.16 22.96 -107.50 -2.47 -2.63 16 20 C -0.22 -2.46 6.41 -36.20 -0.23 -2.69 16 21 C 0.13 1.55 6.59 -81.03 -0.53 1.02 16 22 C -0.06 -0.61 5.19 -27.10 -0.14 -0.75 16 23 C -0.12 -0.95 5.85 -26.67 -0.16 -1.11 16 24 C -0.12 -0.79 5.99 -26.43 -0.16 -0.94 16 25 C -0.03 -0.21 6.27 -27.84 -0.17 -0.39 16 26 C 0.08 1.53 4.60 -3.83 -0.02 1.51 16 27 H 0.27 7.97 8.73 -40.82 -0.36 7.62 16 28 H 0.06 1.42 4.84 -51.93 -0.25 1.17 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.10 6.72 -51.93 -0.35 0.75 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.11 7.31 -51.93 -0.38 0.73 16 35 H 0.10 1.21 7.07 -51.93 -0.37 0.84 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 1.23 7.65 -51.92 -0.40 0.84 16 38 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.45 8.12 -51.94 -0.42 0.02 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 1.20 7.90 -51.93 -0.41 0.79 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -30.38 355.36 -11.62 -42.00 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.24 Total: -0.88 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -2.20 Total: -10.94 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.67 Total: -44.43 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.69 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -4.49 Total: 20.21 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.47 Total: -2.63 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.38 -11.62 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853523905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.561 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds