Wall clock time and date at job start Tue Mar 31 2020 13:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99709 * 2 1 4 4 H 1.48500 * 109.47245 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47535 * 240.00371 * 3 2 1 6 6 H 1.48503 * 109.46986 * 120.00217 * 3 2 1 7 7 C 1.37872 * 120.00543 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00014 * 17.97852 * 7 2 1 9 9 C 1.50704 * 120.00158 * 197.97965 * 7 2 1 10 10 H 1.08995 * 109.49989 * 305.51473 * 9 7 2 11 11 C 1.53117 * 109.50449 * 65.59658 * 9 7 2 12 12 C 1.53119 * 109.16143 * 177.59193 * 11 9 7 13 13 C 1.53035 * 109.27848 * 302.35140 * 12 11 9 14 14 N 1.46847 * 109.52808 * 59.17710 * 13 12 11 15 15 C 1.46894 * 111.00094 * 174.15636 * 14 13 12 16 16 N 1.46495 * 109.47701 * 276.06451 * 15 14 13 17 17 C 1.33894 * 120.92718 * 98.34229 * 16 15 14 18 18 O 1.21832 * 127.07866 * 359.97438 * 17 16 15 19 19 S 1.72209 * 105.83508 * 179.97438 * 17 16 15 20 20 C 1.76560 * 94.66505 * 0.29754 * 19 17 16 21 21 C 1.33305 * 106.53784 * 359.82151 * 20 19 17 22 22 C 1.52339 * 121.76030 * 180.02562 * 21 20 19 23 23 C 1.52945 * 108.87037 * 341.89691 * 22 21 20 24 24 C 1.53177 * 109.57950 * 51.74663 * 23 22 21 25 25 C 1.50348 * 126.97458 * 179.84935 * 20 19 17 26 26 C 1.46852 * 111.19440 * 298.25866 * 14 13 12 27 27 H 0.96998 * 119.99575 * 174.95601 * 1 2 3 28 28 H 1.08991 * 109.52211 * 297.50605 * 11 9 7 29 29 H 1.09001 * 109.52060 * 57.62910 * 11 9 7 30 30 H 1.09001 * 109.49816 * 62.29317 * 12 11 9 31 31 H 1.08997 * 109.50171 * 182.36464 * 12 11 9 32 32 H 1.09003 * 109.46069 * 179.19503 * 13 12 11 33 33 H 1.09003 * 109.46276 * 299.16942 * 13 12 11 34 34 H 1.09003 * 109.46788 * 36.06860 * 15 14 13 35 35 H 1.09000 * 109.46876 * 156.06056 * 15 14 13 36 36 H 1.09002 * 109.57641 * 101.71614 * 22 21 20 37 37 H 1.09008 * 109.57265 * 222.07932 * 22 21 20 38 38 H 1.09005 * 109.45210 * 291.71230 * 23 22 21 39 39 H 1.09006 * 109.43934 * 171.76738 * 23 22 21 40 40 H 1.09000 * 109.58903 * 170.39858 * 24 23 22 41 41 H 1.08988 * 109.59186 * 49.96165 * 24 23 22 42 42 H 1.09000 * 109.61740 * 284.25728 * 25 20 19 43 43 H 1.08997 * 109.62211 * 44.81229 * 25 20 19 44 44 H 1.08998 * 109.46213 * 301.72214 * 26 14 13 45 45 H 1.08998 * 109.45462 * 181.75939 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6966 -1.2125 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 1.5043 -2.1063 -0.2896 9 6 3.4565 -1.2259 0.4023 10 1 4.0179 -0.5146 -0.2034 11 6 3.5850 -0.8512 1.8814 12 6 5.0556 -0.9445 2.2975 13 6 5.5681 -2.3610 2.0276 14 7 5.4244 -2.6712 0.5995 15 6 6.0329 -3.9692 0.2789 16 7 7.4700 -3.7932 0.0561 17 6 8.3542 -4.0560 1.0267 18 8 8.1121 -4.4501 2.1538 19 16 9.9038 -3.7221 0.3537 20 6 9.2737 -3.2299 -1.2205 21 6 7.9476 -3.3474 -1.1520 22 6 7.0504 -3.0080 -2.3355 23 6 7.8367 -2.1408 -3.3198 24 6 9.1697 -2.8193 -3.6502 25 6 10.0702 -2.7685 -2.4092 26 6 4.0154 -2.6342 0.1874 27 1 -0.4849 -0.8368 -0.0739 28 1 3.2278 0.1675 2.0314 29 1 2.9907 -1.5380 2.4841 30 1 5.6427 -0.2291 1.7217 31 1 5.1480 -0.7196 3.3600 32 1 6.6190 -2.4268 2.3096 33 1 4.9894 -3.0746 2.6142 34 1 5.8755 -4.6589 1.1082 35 1 5.5722 -4.3736 -0.6224 36 1 6.7348 -3.9268 -2.8298 37 1 6.1752 -2.4608 -1.9851 38 1 8.0270 -1.1653 -2.8723 39 1 7.2575 -2.0139 -4.2344 40 1 9.6528 -2.2939 -4.4740 41 1 8.9919 -3.8574 -3.9302 42 1 10.4116 -1.7462 -2.2466 43 1 10.9281 -3.4254 -2.5523 44 1 3.4440 -3.3465 0.7827 45 1 3.9385 -2.8985 -0.8672 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853523905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:06 Heat of formation + Delta-G solvation = -36.375008 kcal Electronic energy + Delta-G solvation = -26229.318405 eV Core-core repulsion = 22757.692254 eV Total energy + Delta-G solvation = -3471.626150 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.15151 -39.80070 -39.28155 -36.94694 -35.48561 -33.89270 -32.05488 -31.80806 -30.61090 -28.26748 -26.60193 -25.10381 -24.33186 -23.49420 -23.00061 -22.08525 -20.58997 -20.16294 -19.64978 -19.13721 -17.89377 -17.77850 -16.69294 -16.32428 -16.04870 -15.92154 -15.75721 -15.31424 -15.05444 -14.78963 -14.61500 -14.58867 -14.42299 -14.02840 -13.87654 -13.83461 -13.63801 -13.27843 -12.82789 -12.76609 -12.58895 -12.34221 -12.12848 -11.86154 -11.75685 -11.70853 -11.64695 -11.43344 -11.27316 -11.18639 -11.11809 -10.76036 -10.48022 -10.33316 -9.57222 -8.85943 -8.72042 -6.33794 -0.11388 0.36191 0.77692 1.09075 1.48338 1.53950 1.72834 1.73665 2.50362 2.77500 3.09028 3.44666 3.68801 3.86352 3.93821 4.01043 4.03555 4.08924 4.13794 4.23590 4.29405 4.34539 4.46109 4.50511 4.61403 4.67179 4.69391 4.77431 4.86339 4.89837 4.94666 5.03554 5.09550 5.11450 5.14842 5.23423 5.25244 5.42717 5.45485 5.53493 5.67641 5.70226 5.77292 5.93801 6.06293 6.16440 6.26459 6.61712 7.43081 8.67202 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.004214 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.954409 B = 6643.540577 C = 7606.850346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.016 4.016 3 Si 1.081 2.919 4 H -0.295 1.295 5 H -0.261 1.261 6 H -0.247 1.247 7 C -0.598 4.598 8 H 0.020 0.980 9 C 0.029 3.971 10 H 0.032 0.968 11 C -0.122 4.122 12 C -0.109 4.109 13 C 0.070 3.930 14 N -0.547 5.547 15 C 0.266 3.734 16 N -0.520 5.520 17 C 0.466 3.534 18 O -0.523 6.523 19 S 0.007 5.993 20 C -0.208 4.208 21 C 0.106 3.894 22 C -0.058 4.058 23 C -0.115 4.115 24 C -0.109 4.109 25 C -0.029 4.029 26 C 0.094 3.906 27 H 0.252 0.748 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.016 0.984 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.547 -5.867 -8.035 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.214 4.214 3 Si 0.903 3.097 4 H -0.221 1.221 5 H -0.186 1.186 6 H -0.172 1.172 7 C -0.636 4.636 8 H 0.039 0.961 9 C 0.010 3.990 10 H 0.050 0.950 11 C -0.160 4.160 12 C -0.147 4.147 13 C -0.058 4.058 14 N -0.273 5.273 15 C 0.051 3.949 16 N -0.240 5.240 17 C 0.150 3.850 18 O -0.407 6.407 19 S 0.252 5.748 20 C -0.327 4.327 21 C -0.003 4.003 22 C -0.097 4.097 23 C -0.153 4.153 24 C -0.148 4.148 25 C -0.069 4.069 26 C -0.034 4.034 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.035 0.965 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 23.673 -4.269 -6.951 25.039 hybrid contribution -2.506 -2.566 0.580 3.633 sum 21.167 -6.835 -6.372 23.138 Atomic orbital electron populations 1.70998 1.08343 1.29958 1.48507 1.27058 0.95936 1.06107 0.92296 0.83607 0.74844 0.71817 0.79411 1.22113 1.18557 1.17230 1.22143 0.97134 0.94683 1.49646 0.96130 1.18908 0.93800 0.93526 0.92788 0.95033 1.21996 0.94810 1.00673 0.98472 1.21584 0.96205 0.95854 1.01064 1.21975 0.99595 0.97013 0.87180 1.61687 1.17623 1.29621 1.18361 1.22204 0.78752 0.90886 1.03050 1.46319 1.08863 1.57568 1.11257 1.21734 0.91780 0.83902 0.87626 1.90921 1.80266 1.51534 1.17977 1.84731 1.08410 1.71873 1.09741 1.24041 0.94290 1.15245 0.99099 1.20543 0.94328 0.98349 0.87034 1.20866 0.96668 1.01853 0.90347 1.21549 0.96684 0.98347 0.98707 1.21665 0.94526 1.02057 0.96557 1.20139 0.96788 1.01891 0.88063 1.21859 0.84001 0.97933 0.99566 0.93913 0.92960 0.94657 0.91538 0.90809 0.92021 0.95586 0.91778 0.86189 0.88221 0.90172 0.91845 0.89158 0.88556 0.90782 0.89381 0.88844 0.96544 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.17 13.70 21.45 0.29 -57.88 16 2 C -0.02 -0.90 5.34 84.65 0.45 -0.44 16 3 Si 1.08 49.02 26.41 68.60 1.81 50.83 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.25 -10.14 5.56 99.48 0.55 -9.59 16 7 C -0.60 -32.53 8.82 25.60 0.23 -32.30 16 8 H 0.02 1.22 7.99 -2.91 -0.02 1.20 16 9 C 0.03 1.29 1.84 -11.49 -0.02 1.27 16 10 H 0.03 1.40 6.80 -2.39 -0.02 1.39 16 11 C -0.12 -5.10 4.96 30.67 0.15 -4.95 16 12 C -0.11 -3.79 6.09 30.65 0.19 -3.60 16 13 C 0.07 2.39 5.30 86.32 0.46 2.85 16 14 N -0.55 -17.70 4.56 -908.73 -4.14 -21.84 16 15 C 0.27 7.40 4.88 170.81 0.83 8.23 16 16 N -0.52 -13.98 2.86 -650.82 -1.86 -15.84 16 17 C 0.47 14.18 7.59 129.93 0.99 15.17 16 18 O -0.52 -19.20 16.72 -4.77 -0.08 -19.28 16 19 S 0.01 0.16 22.96 -56.49 -1.30 -1.13 16 20 C -0.21 -4.02 6.41 24.46 0.16 -3.86 16 21 C 0.11 2.32 6.59 41.11 0.27 2.59 16 22 C -0.06 -1.02 5.19 30.36 0.16 -0.86 16 23 C -0.12 -1.50 5.85 30.64 0.18 -1.32 16 24 C -0.11 -1.01 5.99 30.79 0.18 -0.83 16 25 C -0.03 -0.35 6.27 29.87 0.19 -0.16 16 26 C 0.09 3.49 4.60 86.32 0.40 3.89 16 27 H 0.25 15.76 8.73 -92.71 -0.81 14.95 16 28 H 0.05 2.29 4.84 -2.39 -0.01 2.28 16 29 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.14 6.72 -2.39 -0.02 2.13 16 33 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 1.93 7.31 -2.39 -0.02 1.92 16 35 H 0.12 2.78 7.07 -2.39 -0.02 2.76 16 36 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.79 7.65 -2.38 -0.02 1.77 16 38 H 0.06 0.96 8.11 -2.38 -0.02 0.94 16 39 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.08 2.72 7.90 -2.39 -0.02 2.70 16 Total: -1.00 -67.57 355.36 0.32 -67.25 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.79 Total: 12.24 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 4.81 Total: -14.35 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -5.71 Total: -95.56 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.08 Total: -19.28 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 1.81 Total: 50.83 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -1.30 Total: -1.13 kcal Total: -67.57 0.32 -67.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853523905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.873 kcal (2) G-P(sol) polarization free energy of solvation -67.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds