Wall clock time and date at job start Tue Mar 31 2020 13:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00064 * 2 1 4 4 H 1.48492 * 109.47108 * 270.00280 * 3 2 1 5 5 H 1.48509 * 109.46713 * 30.00230 * 3 2 1 6 6 H 1.48493 * 109.47031 * 149.99762 * 3 2 1 7 7 C 1.37871 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00188 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00238 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.53932 * 60.09139 * 9 7 2 11 11 C 1.53119 * 109.50332 * 299.99597 * 9 7 2 12 12 C 1.53113 * 109.16512 * 182.40204 * 11 9 7 13 13 C 1.53036 * 109.27719 * 57.65642 * 12 11 9 14 14 N 1.46850 * 109.52248 * 300.81702 * 13 12 11 15 15 C 1.46902 * 111.00123 * 185.83926 * 14 13 12 16 16 N 1.46496 * 109.47051 * 81.04671 * 15 14 13 17 17 C 1.33888 * 120.92784 * 269.98073 * 16 15 14 18 18 O 1.21824 * 127.08612 * 0.02562 * 17 16 15 19 19 S 1.72221 * 105.83321 * 180.02562 * 17 16 15 20 20 C 1.76562 * 94.66132 * 359.97438 * 19 17 16 21 21 C 1.33304 * 106.54094 * 359.97438 * 20 19 17 22 22 C 1.52346 * 121.75722 * 180.02562 * 21 20 19 23 23 C 1.52956 * 108.86980 * 341.89927 * 22 21 20 24 24 C 1.53179 * 109.57515 * 51.74868 * 23 22 21 25 25 C 1.50356 * 126.97127 * 180.02562 * 20 19 17 26 26 C 1.46853 * 111.19330 * 61.74275 * 14 13 12 27 27 H 0.96995 * 119.99912 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.51977 * 62.49596 * 11 9 7 29 29 H 1.09004 * 109.52368 * 302.31377 * 11 9 7 30 30 H 1.08997 * 109.50311 * 297.71550 * 12 11 9 31 31 H 1.09004 * 109.50422 * 177.59667 * 12 11 9 32 32 H 1.09003 * 109.46100 * 180.80665 * 13 12 11 33 33 H 1.08995 * 109.46516 * 60.83589 * 13 12 11 34 34 H 1.09002 * 109.46873 * 321.04647 * 15 14 13 35 35 H 1.08998 * 109.47012 * 201.05015 * 15 14 13 36 36 H 1.09004 * 109.56943 * 101.71827 * 22 21 20 37 37 H 1.09004 * 109.56620 * 222.08446 * 22 21 20 38 38 H 1.09004 * 109.44926 * 171.77326 * 23 22 21 39 39 H 1.08997 * 109.45345 * 291.73134 * 23 22 21 40 40 H 1.09004 * 109.58407 * 170.39314 * 24 23 22 41 41 H 1.08999 * 109.59581 * 49.95760 * 24 23 22 42 42 H 1.08998 * 109.61851 * 284.26667 * 25 20 19 43 43 H 1.09000 * 109.61875 * 44.81402 * 25 20 19 44 44 H 1.09007 * 109.46176 * 58.27620 * 26 14 13 45 45 H 1.08995 * 109.45923 * 178.23645 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6256 -2.5590 -0.8901 11 6 0.3701 -2.5808 1.2502 12 6 -0.3455 -3.9342 1.2731 13 6 0.6946 -5.0563 1.2418 14 7 1.5112 -4.9348 0.0273 15 6 2.4288 -6.0741 -0.1064 16 7 1.7088 -7.2169 -0.6738 17 6 1.0915 -8.1031 0.1175 18 8 1.0407 -8.0907 1.3347 19 16 0.3840 -9.2641 -0.9396 20 6 0.9628 -8.4862 -2.4151 21 6 1.6476 -7.4084 -2.0324 22 6 2.3043 -6.4754 -3.0420 23 6 2.4299 -7.2046 -4.3807 24 6 1.0696 -7.7864 -4.7777 25 6 0.7315 -8.9431 -3.8288 26 6 2.2449 -3.6628 0.0060 27 1 -0.4850 0.8400 0.0004 28 1 -0.3678 -1.7788 1.2287 29 1 0.9910 -2.4819 2.1407 30 1 -0.9961 -4.0166 0.4024 31 1 -0.9413 -4.0155 2.1823 32 1 0.1878 -6.0214 1.2435 33 1 1.3361 -4.9816 2.1198 34 1 2.8204 -6.3423 0.8749 35 1 3.2536 -5.8011 -0.7645 36 1 1.6904 -5.5836 -3.1681 37 1 3.2949 -6.1918 -2.6863 38 1 2.7621 -6.5034 -5.1462 39 1 3.1565 -8.0117 -4.2876 40 1 1.1151 -8.1555 -5.8023 41 1 0.3046 -7.0140 -4.6989 42 1 1.3744 -9.7957 -4.0476 43 1 -0.3132 -9.2271 -3.9553 44 1 2.8792 -3.5946 0.8899 45 1 2.8642 -3.6158 -0.8896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853523906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:09 Heat of formation + Delta-G solvation = -17.322333 kcal Electronic energy + Delta-G solvation = -26057.087708 eV Core-core repulsion = 22586.287744 eV Total energy + Delta-G solvation = -3470.799964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.01550 -38.35573 -37.95185 -35.87753 -33.66629 -31.91253 -30.99466 -30.04590 -29.45594 -26.96675 -25.00368 -23.74614 -23.37828 -22.14688 -21.71690 -20.93180 -19.19477 -18.71285 -18.19176 -16.84202 -16.67953 -16.05107 -15.43403 -15.17135 -14.81230 -14.39237 -14.33507 -14.05436 -13.79646 -13.64288 -13.48321 -13.10444 -13.00306 -12.82055 -12.53299 -12.36400 -11.96304 -11.86099 -11.49143 -11.09881 -11.02135 -11.01777 -10.99405 -10.75322 -10.72439 -10.51734 -10.17722 -9.97672 -9.82736 -9.56058 -9.51285 -9.09658 -8.77584 -8.36769 -7.96620 -7.77030 -6.02457 -4.09607 1.03355 1.42349 1.80728 2.24778 2.84620 3.27132 3.34521 3.36793 4.23014 4.39047 4.46010 4.62070 4.66297 4.81438 4.88195 5.03447 5.23920 5.27760 5.32162 5.37459 5.46031 5.56265 5.66973 5.71053 5.77494 5.79287 5.83156 5.89867 6.02588 6.11147 6.19986 6.24289 6.25439 6.43887 6.65630 6.68794 6.80726 6.87741 7.13456 7.26852 7.37804 7.54524 7.60272 7.70923 7.99373 8.11079 8.40098 8.94042 9.55240 11.03357 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016674 B = 0.003750 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.809695 B = 7465.276679 C = 8492.822808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.058 3.942 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.116 4.116 13 C 0.062 3.938 14 N -0.548 5.548 15 C 0.262 3.738 16 N -0.520 5.520 17 C 0.488 3.512 18 O -0.478 6.478 19 S -0.014 6.014 20 C -0.223 4.223 21 C 0.126 3.874 22 C -0.057 4.057 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.026 4.026 26 C 0.072 3.928 27 H 0.260 0.740 28 H 0.092 0.908 29 H 0.031 0.969 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.028 0.972 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.025 0.975 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.515 -16.983 -8.835 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.072 0.928 9 C 0.039 3.961 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.153 4.153 13 C -0.065 4.065 14 N -0.274 5.274 15 C 0.048 3.952 16 N -0.240 5.240 17 C 0.170 3.830 18 O -0.358 6.358 19 S 0.230 5.770 20 C -0.342 4.342 21 C 0.016 3.984 22 C -0.096 4.096 23 C -0.154 4.154 24 C -0.157 4.157 25 C -0.066 4.066 26 C -0.055 4.055 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.043 0.957 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.294 -17.950 -8.117 19.833 hybrid contribution 1.655 2.101 0.749 2.778 sum 3.949 -15.849 -7.368 17.918 Atomic orbital electron populations 1.69888 1.05870 1.26428 1.50329 1.24924 0.94808 0.98972 0.95002 0.86623 0.79852 0.83597 0.78077 1.20680 1.21248 1.20003 1.21099 0.92785 0.90536 1.51160 0.92792 1.18646 0.92453 0.90010 0.94970 0.94763 1.21668 1.00082 0.94692 0.98445 1.21668 0.97124 0.96287 1.00271 1.22156 0.95639 0.99397 0.89345 1.61770 1.23993 1.02105 1.39499 1.22247 0.90940 0.83125 0.98932 1.46300 1.47928 1.24550 1.05228 1.21290 0.83855 0.86692 0.91196 1.90948 1.61578 1.73480 1.09837 1.84781 1.61069 1.32439 0.98671 1.23446 1.10933 1.01416 0.98418 1.20124 0.98909 0.96470 0.82908 1.20766 1.00641 0.96767 0.91441 1.21540 0.97811 1.00203 0.95809 1.21671 0.97640 0.97866 0.98517 1.19897 1.02013 0.98119 0.86521 1.22335 0.96604 0.87480 0.99035 0.92981 0.88985 0.95048 0.92291 0.93375 0.91904 0.95377 0.91433 0.88249 0.88207 0.89943 0.90475 0.91406 0.90819 0.90923 0.90503 0.90369 0.95694 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.83 11.35 55.43 0.63 -24.20 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.65 8.56 -34.44 -0.29 -13.95 16 8 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 9 C 0.06 1.40 2.26 -91.70 -0.21 1.19 16 10 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.11 -2.62 5.02 -26.61 -0.13 -2.75 16 12 C -0.12 -2.38 6.09 -26.65 -0.16 -2.54 16 13 C 0.06 1.20 5.18 -3.83 -0.02 1.18 16 14 N -0.55 -9.90 4.75 -238.57 -1.13 -11.03 16 15 C 0.26 3.96 5.18 -63.32 -0.33 3.64 16 16 N -0.52 -7.65 2.84 -119.55 -0.34 -7.99 16 17 C 0.49 7.94 7.42 53.66 0.40 8.34 16 18 O -0.48 -9.06 15.89 5.08 0.08 -8.98 16 19 S -0.01 -0.19 22.96 -107.50 -2.47 -2.66 16 20 C -0.22 -2.56 6.41 -36.20 -0.23 -2.79 16 21 C 0.13 1.57 6.59 -81.03 -0.53 1.03 16 22 C -0.06 -0.57 5.50 -27.09 -0.15 -0.71 16 23 C -0.12 -0.86 5.85 -26.66 -0.16 -1.01 16 24 C -0.12 -0.85 5.99 -26.44 -0.16 -1.01 16 25 C -0.03 -0.21 6.27 -27.85 -0.17 -0.39 16 26 C 0.07 1.43 4.62 -3.83 -0.02 1.41 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.24 5.57 -51.93 -0.29 0.95 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.06 7.54 -51.93 -0.39 0.67 16 35 H 0.10 1.26 6.07 -51.93 -0.32 0.95 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 0.76 6.90 -51.93 -0.36 0.40 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 1.15 7.91 -51.93 -0.41 0.74 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -29.45 356.88 -12.26 -41.70 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -7.12 Total: -1.22 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.26 Total: -6.71 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.84 Total: -43.23 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.08 Total: -8.98 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -0.19 SS G_CDS: -2.47 Total: -2.66 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.45 -12.26 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853523906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.380 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds