Wall clock time and date at job start Tue Mar 31 2020 12:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.46560 * 2 1 4 4 C 1.35983 * 116.99581 * 179.97438 * 3 2 1 5 5 C 1.38701 * 119.99963 * 179.97438 * 4 3 2 6 6 C 1.38134 * 120.00048 * 180.02562 * 5 4 3 7 7 C 1.38705 * 119.99811 * 0.02562 * 6 5 4 8 8 O 1.35978 * 119.99582 * 179.97438 * 7 6 5 9 9 C 1.42901 * 116.99875 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47376 * 179.97438 * 9 8 7 11 11 S 1.81400 * 109.47277 * 179.97438 * 10 9 8 12 12 C 1.81397 * 103.00051 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47310 * 180.02562 * 12 11 10 14 14 C 1.50697 * 115.54868 * 65.33269 * 13 12 11 15 15 H 1.08005 * 120.00235 * 265.65782 * 14 13 12 16 16 C 1.37878 * 119.99813 * 85.65872 * 14 13 12 17 17 N 1.31515 * 120.00333 * 353.69066 * 16 14 13 18 18 Si 1.86799 * 119.99822 * 173.69447 * 16 14 13 19 19 H 1.48502 * 109.47122 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47376 * 120.00036 * 18 16 14 21 21 H 1.48502 * 109.47057 * 240.00050 * 18 16 14 22 22 C 1.52997 * 117.49558 * 279.66641 * 13 12 11 23 23 C 1.53000 * 117.49942 * 211.00456 * 13 12 11 24 24 C 1.38692 * 119.99870 * 0.25639 * 7 6 5 25 25 C 1.38133 * 120.00256 * 359.48536 * 24 7 6 26 26 H 1.08997 * 109.47179 * 60.00798 * 1 2 3 27 27 H 1.09008 * 109.47057 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47606 * 300.00380 * 1 2 3 29 29 H 1.08993 * 109.47099 * 239.99744 * 2 1 3 30 30 H 1.08997 * 109.46571 * 119.99656 * 2 1 3 31 31 H 1.08001 * 119.99962 * 0.02562 * 5 4 3 32 32 H 1.07992 * 120.00008 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.47151 * 60.00070 * 9 8 7 34 34 H 1.09004 * 109.47054 * 300.00173 * 9 8 7 35 35 H 1.08998 * 109.46691 * 60.00073 * 10 9 8 36 36 H 1.08997 * 109.47429 * 300.00632 * 10 9 8 37 37 H 1.08997 * 109.47207 * 300.00397 * 12 11 10 38 38 H 1.09006 * 109.47123 * 60.00481 * 12 11 10 39 39 H 0.96996 * 119.99981 * 174.97807 * 17 16 14 40 40 H 1.09000 * 117.49943 * 359.97438 * 22 13 12 41 41 H 1.08998 * 117.49945 * 145.02076 * 22 13 12 42 42 H 1.08995 * 117.49918 * 214.97685 * 23 13 12 43 43 H 1.09001 * 117.49770 * 359.97438 * 23 13 12 44 44 H 1.08000 * 119.99701 * 179.72788 * 24 7 6 45 45 H 1.08004 * 119.99765 * 180.23117 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3543 1.5255 0.0005 5 6 3.8844 2.8072 0.0000 6 6 5.2538 2.9883 0.0001 7 6 6.0988 1.8883 0.0000 8 8 7.4468 2.0666 -0.0005 9 6 8.2569 0.8893 -0.0010 10 6 9.7343 1.2868 -0.0022 11 16 10.7626 -0.2076 -0.0021 12 6 12.4500 0.4581 -0.0028 13 6 13.4539 -0.6965 -0.0034 14 6 13.4515 -1.5591 -1.2391 15 1 12.8628 -2.4642 -1.2648 16 6 14.2010 -1.1928 -2.3369 17 7 14.8183 -0.0317 -2.3540 18 14 14.3393 -2.3457 -3.8002 19 1 13.5576 -3.5799 -3.5336 20 1 13.8061 -1.6736 -5.0122 21 1 15.7648 -2.7006 -4.0177 22 6 13.7460 -1.3793 1.3342 23 6 14.7956 -0.4666 0.6951 24 6 5.5687 0.6067 -0.0054 25 6 4.1993 0.4256 0.0000 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.2265 3.6637 -0.0004 32 1 5.6666 3.9862 -0.0008 33 1 8.0392 0.2989 -0.8910 34 1 8.0399 0.2985 0.8889 35 1 9.9523 1.8774 0.8876 36 1 9.9510 1.8774 -0.8923 37 1 12.5991 1.0693 -0.8929 38 1 12.5997 1.0696 0.8871 39 1 15.4038 0.1955 -3.0932 40 1 13.2233 -1.0057 2.2147 41 1 13.9369 -2.4524 1.3204 42 1 15.6765 -0.9395 0.2611 43 1 14.9632 0.5074 1.1547 44 1 6.2266 -0.2498 -0.0098 45 1 3.7865 -0.5725 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853761394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:50 Heat of formation + Delta-G solvation = -48.312030 kcal Electronic energy + Delta-G solvation = -23213.384328 eV Core-core repulsion = 19708.947798 eV Total energy + Delta-G solvation = -3504.436530 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41893 -40.07254 -38.42223 -37.53094 -33.99066 -33.07606 -32.63822 -31.84573 -29.52842 -29.34165 -27.39348 -25.43047 -24.67062 -22.92115 -22.69626 -22.53429 -21.07140 -19.55932 -18.83449 -18.17143 -17.30986 -17.28567 -16.97568 -16.72406 -16.58097 -15.86724 -15.67486 -15.29574 -15.09264 -14.87416 -14.68560 -14.55602 -14.16718 -14.05582 -13.73999 -13.66212 -13.22239 -13.20296 -12.96757 -12.90249 -12.83495 -12.74394 -12.44754 -12.33911 -12.01159 -11.94595 -11.64398 -11.51596 -11.27351 -10.98490 -10.71808 -10.45983 -10.10075 -9.86758 -8.75842 -8.46561 -8.11110 -6.20890 0.23282 0.43260 0.61246 1.39471 1.43458 1.53436 1.82229 2.25448 2.42959 2.44371 2.70753 3.17913 3.53900 3.64189 3.78459 3.81057 3.85030 4.06846 4.11771 4.16384 4.19135 4.26279 4.37580 4.41237 4.43769 4.44073 4.56753 4.60864 4.66589 4.69285 4.79978 4.92156 4.94247 4.95566 5.01250 5.07084 5.19386 5.24080 5.29612 5.33197 5.56634 5.58496 5.63399 5.78506 6.28642 6.38595 6.50017 6.83836 7.47282 8.97305 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019475 B = 0.002033 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.386488 B =13767.554717 C =14290.428961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.330 6.330 4 C 0.082 3.918 5 C -0.117 4.117 6 C -0.117 4.117 7 C 0.077 3.923 8 O -0.326 6.326 9 C 0.089 3.911 10 C -0.093 4.093 11 S -0.248 6.248 12 C -0.015 4.015 13 C 0.023 3.977 14 C -0.493 4.493 15 H 0.049 0.951 16 C 0.027 3.973 17 N -0.906 5.906 18 Si 0.943 3.057 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.280 1.280 22 C -0.180 4.180 23 C -0.151 4.151 24 C -0.175 4.175 25 C -0.170 4.170 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.259 0.741 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.139 0.861 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.688 3.076 6.261 25.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.245 6.245 4 C 0.037 3.963 5 C -0.135 4.135 6 C -0.136 4.136 7 C 0.032 3.968 8 O -0.241 6.241 9 C 0.013 3.987 10 C -0.241 4.241 11 S -0.020 6.020 12 C -0.164 4.164 13 C 0.021 3.979 14 C -0.530 4.530 15 H 0.067 0.933 16 C -0.173 4.173 17 N -0.544 5.544 18 Si 0.770 3.230 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.206 1.206 22 C -0.218 4.218 23 C -0.190 4.190 24 C -0.194 4.194 25 C -0.189 4.189 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.171 0.829 32 H 0.167 0.833 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.157 0.843 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -25.025 2.477 6.108 25.879 hybrid contribution 1.190 0.393 -1.022 1.617 sum -23.835 2.870 5.086 24.540 Atomic orbital electron populations 1.21797 0.91463 1.04092 1.03235 1.23035 0.96936 0.81003 1.02084 1.86057 1.18388 1.30927 1.89163 1.19054 0.82882 0.94334 1.00020 1.20455 0.94035 0.95725 1.03295 1.20464 0.91447 0.98361 1.03302 1.19162 0.82572 0.94525 1.00564 1.86012 1.14587 1.34127 1.89338 1.22266 0.87363 0.86145 1.02899 1.23143 0.95468 0.99480 1.06015 1.86662 1.03632 1.13737 1.98012 1.22843 0.91676 0.99843 1.01998 1.18591 0.93026 0.94742 0.91528 1.20590 1.28030 1.07032 0.97396 0.93271 1.25581 0.95754 0.95883 1.00082 1.70098 1.30319 1.21021 1.32976 0.85732 0.77720 0.79652 0.79944 1.19400 1.20996 1.20629 1.23011 1.04096 0.97771 0.96893 1.22513 0.93602 0.99022 1.03904 1.21287 0.96313 0.96370 1.05421 1.21256 0.93026 0.99223 1.05355 0.91831 0.88406 0.91729 0.91446 0.91302 0.82850 0.83262 0.91067 0.90258 0.88804 0.90039 0.92510 0.91414 0.93177 0.88920 0.90378 0.91881 0.90372 0.84314 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 71.98 0.74 -0.53 16 2 C 0.04 0.54 5.46 71.98 0.39 0.93 16 3 O -0.33 -6.17 10.14 -93.36 -0.95 -7.11 16 4 C 0.08 1.66 6.69 22.49 0.15 1.81 16 5 C -0.12 -2.26 9.98 22.36 0.22 -2.03 16 6 C -0.12 -2.47 9.98 22.36 0.22 -2.25 16 7 C 0.08 1.87 6.69 22.49 0.15 2.02 16 8 O -0.33 -8.74 10.14 -93.30 -0.95 -9.68 16 9 C 0.09 2.33 4.75 71.98 0.34 2.67 16 10 C -0.09 -2.77 6.31 71.98 0.45 -2.32 16 11 S -0.25 -9.39 21.43 -56.49 -1.21 -10.60 16 12 C -0.02 -0.66 5.80 71.98 0.42 -0.24 16 13 C 0.02 1.08 1.34 -52.93 -0.07 1.01 16 14 C -0.49 -26.44 8.49 25.60 0.22 -26.22 16 15 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 16 C 0.03 1.47 5.39 84.65 0.46 1.93 16 17 N -0.91 -50.76 12.90 21.45 0.28 -50.48 16 18 Si 0.94 43.38 29.55 68.60 2.03 45.41 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 C -0.18 -7.49 9.96 30.62 0.30 -7.19 16 23 C -0.15 -6.81 9.40 30.62 0.29 -6.52 16 24 C -0.18 -3.85 9.03 22.35 0.20 -3.64 16 25 C -0.17 -3.30 9.03 22.35 0.20 -3.09 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 30 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 31 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 33 H 0.07 1.84 7.65 -2.39 -0.02 1.82 16 34 H 0.08 1.89 7.67 -2.38 -0.02 1.88 16 35 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.06 2.74 8.14 -2.39 -0.02 2.73 16 38 H 0.07 2.62 8.09 -2.39 -0.02 2.60 16 39 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 40 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 41 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 42 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 44 H 0.14 2.79 6.29 -2.91 -0.02 2.77 16 45 H 0.15 2.17 6.29 -2.91 -0.02 2.15 16 Total: -1.00 -60.99 389.03 4.85 -56.14 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.96 Total: 20.00 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 4.69 Total: -43.67 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.28 Total: -50.48 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -1.89 Total: -16.80 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -9.39 SS G_CDS: -1.21 Total: -10.60 kcal Total: -60.99 4.85 -56.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853761394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.832 kcal (2) G-P(sol) polarization free energy of solvation -60.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds