Wall clock time and date at job start Tue Mar 31 2020 13:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99982 * 2 1 4 4 C 1.52998 * 109.46759 * 180.02562 * 3 2 1 5 5 O 1.45200 * 109.47357 * 294.73422 * 4 3 2 6 6 C 1.34232 * 116.99729 * 210.00490 * 5 4 3 7 7 O 1.20820 * 120.00186 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99446 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.46538 * 179.97438 * 8 6 5 10 10 C 1.38234 * 120.00475 * 270.27234 * 9 8 6 11 11 C 1.38234 * 120.00241 * 180.28191 * 10 9 8 12 12 C 1.38232 * 119.99686 * 359.47199 * 11 10 9 13 13 Si 1.86807 * 119.99734 * 180.27772 * 12 11 10 14 14 C 1.86295 * 109.47312 * 89.99519 * 13 12 11 15 15 C 1.86302 * 109.46967 * 209.99948 * 13 12 11 16 16 C 1.86305 * 109.47020 * 329.99727 * 13 12 11 17 17 C 1.38230 * 120.00345 * 0.25256 * 12 11 10 18 18 C 1.38237 * 119.99947 * 359.97438 * 17 12 11 19 19 C 1.50695 * 109.47284 * 54.73461 * 4 3 2 20 20 N 1.27950 * 120.00184 * 85.25512 * 19 4 3 21 21 Si 1.86803 * 120.00217 * 265.25303 * 19 4 3 22 22 H 1.48497 * 109.46779 * 0.02562 * 21 19 4 23 23 H 1.48500 * 109.46952 * 120.00028 * 21 19 4 24 24 H 1.48500 * 109.47032 * 239.99989 * 21 19 4 25 25 H 1.08995 * 109.46783 * 299.99552 * 1 2 3 26 26 H 1.08998 * 109.47040 * 59.99651 * 1 2 3 27 27 H 1.09003 * 109.47026 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46927 * 60.00477 * 3 2 1 29 29 H 1.09001 * 109.46954 * 300.00292 * 3 2 1 30 30 H 1.09000 * 109.46616 * 174.73530 * 4 3 2 31 31 H 1.08999 * 109.46999 * 60.00094 * 8 6 5 32 32 H 1.09000 * 109.46974 * 299.99586 * 8 6 5 33 33 H 1.08003 * 119.99726 * 0.02562 * 10 9 8 34 34 H 1.07998 * 119.99932 * 179.74037 * 11 10 9 35 35 H 1.09009 * 109.47055 * 59.99905 * 14 13 12 36 36 H 1.08999 * 109.47075 * 179.97438 * 14 13 12 37 37 H 1.09003 * 109.47386 * 300.00261 * 14 13 12 38 38 H 1.08998 * 109.47348 * 60.00029 * 15 13 12 39 39 H 1.09005 * 109.46727 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.46649 * 299.99525 * 15 13 12 41 41 H 1.08999 * 109.47329 * 59.99773 * 16 13 12 42 42 H 1.08999 * 109.46864 * 180.02562 * 16 13 12 43 43 H 1.09000 * 109.46746 * 299.99911 * 16 13 12 44 44 H 1.07998 * 120.00146 * 180.02562 * 17 12 11 45 45 H 1.07998 * 119.99797 * 179.97438 * 18 17 12 46 46 H 0.97003 * 119.99620 * 5.18302 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9733 0.5751 1.2424 6 6 5.1848 0.9278 1.7004 7 8 5.8573 1.7191 1.0829 8 6 5.7060 0.3366 2.9849 9 6 7.0770 0.8918 3.2734 10 6 8.1996 0.2492 2.7860 11 6 9.4574 0.7553 3.0555 12 6 9.5921 1.9102 3.8032 13 14 11.2915 2.5984 4.1608 14 6 11.7768 3.7872 2.8110 15 6 11.2685 3.4910 5.7959 16 6 12.5241 1.2032 4.2322 17 6 8.4692 2.5560 4.2857 18 6 7.2116 2.0473 4.0202 19 6 3.9710 0.3274 -1.1610 20 7 4.1393 0.8516 -2.3160 21 14 4.2651 -1.5006 -0.9132 22 1 4.0026 -1.8565 0.5044 23 1 3.3524 -2.2727 -1.7942 24 1 5.6737 -1.8258 -1.2531 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.9784 2.1761 -0.0949 31 1 5.7664 -0.7474 2.8878 32 1 5.0312 0.5912 3.8022 33 1 8.0942 -0.6507 2.1981 34 1 10.3347 0.2509 2.6783 35 1 11.0556 4.6035 2.7692 36 1 12.7682 4.1891 3.0200 37 1 11.7902 3.2650 1.8543 38 1 10.9846 2.7955 6.5856 39 1 12.2600 3.8930 6.0043 40 1 10.5473 4.3073 5.7540 41 1 12.5376 0.6809 3.2756 42 1 13.5156 1.6048 4.4413 43 1 12.2402 0.5077 5.0220 44 1 8.5744 3.4585 4.8695 45 1 6.3344 2.5517 4.3976 46 1 4.0601 1.8118 -2.4290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857067295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:29 Heat of formation + Delta-G solvation = -120.529738 kcal Electronic energy + Delta-G solvation = -24969.127435 eV Core-core repulsion = 21368.357148 eV Total energy + Delta-G solvation = -3600.770287 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.82607 -40.05490 -39.16192 -37.61949 -36.36987 -33.92580 -31.81940 -31.47513 -29.64682 -28.66563 -28.42723 -28.37811 -27.36835 -25.12381 -23.43718 -23.30069 -21.76094 -21.43270 -18.99443 -18.38915 -17.89904 -17.34281 -17.21938 -16.66657 -16.37809 -16.07418 -15.91655 -15.67396 -15.21395 -14.39705 -14.32442 -14.26639 -14.11890 -14.03708 -13.83771 -13.73910 -13.57212 -13.41839 -13.32371 -13.22323 -13.17344 -13.07852 -12.98401 -12.81339 -12.64624 -12.53988 -12.29289 -11.89070 -11.81676 -11.51065 -11.32575 -10.99172 -10.88427 -10.84317 -10.79140 -10.18010 -9.70977 -9.56424 0.26282 0.61738 0.78071 1.12223 1.30848 1.50933 1.74965 1.78744 1.87846 1.89008 2.00648 2.06241 2.57693 2.58201 2.98803 3.44387 3.54670 3.66398 3.74959 3.84758 4.02519 4.15213 4.18601 4.22979 4.26470 4.35001 4.39526 4.42018 4.54216 4.70189 4.70539 4.71867 4.72511 4.73680 4.76999 4.79361 4.79872 4.80123 5.07064 5.21007 5.30945 5.43923 5.50584 5.51971 5.57191 5.65352 5.68581 5.95037 6.18599 6.66454 6.79104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.073 3.927 4 C 0.067 3.933 5 O -0.334 6.334 6 C 0.456 3.544 7 O -0.492 6.492 8 C -0.075 4.075 9 C -0.073 4.073 10 C -0.113 4.113 11 C -0.087 4.087 12 C -0.366 4.366 13 Si 1.058 2.942 14 C -0.450 4.450 15 C -0.449 4.449 16 C -0.449 4.449 17 C -0.088 4.088 18 C -0.113 4.113 19 C -0.033 4.033 20 N -0.616 5.616 21 Si 1.065 2.935 22 H -0.235 1.235 23 H -0.243 1.243 24 H -0.255 1.255 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.884 -0.128 3.500 3.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.298 6.298 3 C -0.005 4.005 4 C 0.009 3.991 5 O -0.250 6.250 6 C 0.298 3.702 7 O -0.377 6.377 8 C -0.113 4.113 9 C -0.073 4.073 10 C -0.131 4.131 11 C -0.105 4.105 12 C -0.407 4.407 13 Si 1.250 2.750 14 C -0.557 4.557 15 C -0.556 4.556 16 C -0.557 4.557 17 C -0.106 4.106 18 C -0.131 4.131 19 C -0.278 4.278 20 N -0.228 5.228 21 Si 0.878 3.122 22 H -0.158 1.158 23 H -0.167 1.167 24 H -0.179 1.179 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.111 0.889 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.294 -1.264 2.417 3.019 hybrid contribution -0.880 2.038 0.283 2.238 sum -2.174 0.774 2.700 3.552 Atomic orbital electron populations 1.22825 0.80090 1.03513 1.00240 1.87897 1.20337 1.26176 1.95419 1.22524 0.89479 0.86498 1.02014 1.23129 0.94613 0.98364 0.83011 1.86703 1.34724 1.64598 1.39006 1.23847 0.79490 0.79699 0.87156 1.90715 1.57001 1.32135 1.57891 1.20393 0.95030 1.02711 0.93139 1.19240 0.92870 0.96251 0.98923 1.21084 0.92581 1.00099 0.99373 1.21037 0.96803 0.95708 0.96953 1.27400 1.13244 0.99548 1.00531 0.78193 0.62976 0.66675 0.67141 1.26132 1.05419 1.11077 1.13085 1.26128 1.04561 1.08114 1.16846 1.26127 1.11411 1.13525 1.04596 1.21025 0.92214 0.99031 0.98298 1.21052 0.97900 0.95329 0.98854 1.32242 0.92486 1.12608 0.90450 1.69443 1.10484 1.19565 1.23320 0.83505 0.80264 0.66989 0.81405 1.15777 1.16663 1.17886 0.93611 0.93876 0.88944 0.91132 0.91060 0.87353 0.86327 0.86368 0.86284 0.86026 0.91209 0.91088 0.91166 0.91043 0.90983 0.91207 0.91163 0.90985 0.91044 0.86096 0.86427 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 11.01 101.05 1.11 1.07 16 2 O -0.38 -0.36 9.14 -38.53 -0.35 -0.71 16 3 C 0.07 -0.03 5.81 37.16 0.22 0.18 16 4 C 0.07 0.08 2.54 -27.89 -0.07 0.01 16 5 O -0.33 -0.53 8.10 -41.96 -0.34 -0.87 16 6 C 0.46 0.91 7.79 36.01 0.28 1.19 16 7 O -0.49 -2.43 15.25 -18.74 -0.29 -2.71 16 8 C -0.08 0.04 5.94 -29.03 -0.17 -0.13 16 9 C -0.07 -0.10 4.37 -104.62 -0.46 -0.56 16 10 C -0.11 -0.17 9.70 -39.58 -0.38 -0.56 16 11 C -0.09 -0.09 9.29 -39.58 -0.37 -0.46 16 12 C -0.37 -0.19 4.59 -39.59 -0.18 -0.37 16 13 Si 1.06 -2.03 12.32 -169.99 -2.09 -4.13 16 14 C -0.45 0.27 8.65 101.05 0.87 1.14 16 15 C -0.45 0.66 8.53 101.05 0.86 1.53 16 16 C -0.45 0.64 8.53 101.05 0.86 1.50 16 17 C -0.09 -0.08 9.29 -39.58 -0.37 -0.45 16 18 C -0.11 -0.15 9.70 -39.58 -0.38 -0.53 16 19 C -0.03 -0.08 4.74 -13.90 -0.07 -0.15 16 20 N -0.62 -1.90 13.48 56.23 0.76 -1.14 16 21 Si 1.07 2.36 27.59 -169.99 -4.69 -2.33 16 22 H -0.24 -0.31 6.92 56.52 0.39 0.08 16 23 H -0.24 -0.62 7.11 56.52 0.40 -0.22 16 24 H -0.25 -0.68 7.11 56.52 0.40 -0.27 16 25 H 0.05 -0.11 8.14 -51.93 -0.42 -0.54 16 26 H 0.04 -0.10 8.14 -51.93 -0.42 -0.52 16 27 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 28 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 29 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 30 H 0.11 0.11 7.15 -51.93 -0.37 -0.27 16 31 H 0.12 -0.29 8.09 -51.93 -0.42 -0.71 16 32 H 0.12 -0.33 8.09 -51.93 -0.42 -0.75 16 33 H 0.12 0.00 8.06 -52.48 -0.42 -0.42 16 34 H 0.12 -0.10 7.43 -52.49 -0.39 -0.49 16 35 H 0.07 -0.01 7.96 -51.92 -0.41 -0.43 16 36 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 37 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 38 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 39 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 40 H 0.07 -0.11 7.69 -51.93 -0.40 -0.51 16 41 H 0.07 -0.10 7.69 -51.93 -0.40 -0.50 16 42 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 43 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 44 H 0.12 -0.12 7.43 -52.49 -0.39 -0.51 16 45 H 0.12 -0.04 8.06 -52.49 -0.42 -0.47 16 46 H 0.32 0.47 8.73 -40.82 -0.36 0.11 16 LS Contribution 392.38 15.07 5.91 5.91 Total: 0.00 -6.55 392.38 -7.14 -13.69 By element: Atomic # 1 Polarization: -3.32 SS G_CDS: -7.81 Total: -11.12 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 1.75 Total: 3.41 kcal Atomic # 7 Polarization: -1.90 SS G_CDS: 0.76 Total: -1.14 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: -0.98 Total: -4.30 kcal Atomic # 14 Polarization: 0.33 SS G_CDS: -6.78 Total: -6.46 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -6.55 -7.14 -13.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857067295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.839 kcal (2) G-P(sol) polarization free energy of solvation -6.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds