Wall clock time and date at job start Tue Mar 31 2020 13:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99982 * 2 1 4 4 C 1.52998 * 109.46759 * 180.02562 * 3 2 1 5 5 O 1.45200 * 109.47357 * 294.73422 * 4 3 2 6 6 C 1.34232 * 116.99729 * 210.00490 * 5 4 3 7 7 O 1.20820 * 120.00186 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99446 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.46538 * 179.97438 * 8 6 5 10 10 C 1.38234 * 120.00475 * 270.27234 * 9 8 6 11 11 C 1.38234 * 120.00241 * 180.28191 * 10 9 8 12 12 C 1.38232 * 119.99686 * 359.47199 * 11 10 9 13 13 Si 1.86807 * 119.99734 * 180.27772 * 12 11 10 14 14 C 1.86295 * 109.47312 * 89.99519 * 13 12 11 15 15 C 1.86302 * 109.46967 * 209.99948 * 13 12 11 16 16 C 1.86305 * 109.47020 * 329.99727 * 13 12 11 17 17 C 1.38230 * 120.00345 * 0.25256 * 12 11 10 18 18 C 1.38237 * 119.99947 * 359.97438 * 17 12 11 19 19 C 1.50695 * 109.47284 * 54.73461 * 4 3 2 20 20 N 1.27950 * 120.00184 * 85.25512 * 19 4 3 21 21 Si 1.86803 * 120.00217 * 265.25303 * 19 4 3 22 22 H 1.48497 * 109.46779 * 0.02562 * 21 19 4 23 23 H 1.48500 * 109.46952 * 120.00028 * 21 19 4 24 24 H 1.48500 * 109.47032 * 239.99989 * 21 19 4 25 25 H 1.08995 * 109.46783 * 299.99552 * 1 2 3 26 26 H 1.08998 * 109.47040 * 59.99651 * 1 2 3 27 27 H 1.09003 * 109.47026 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46927 * 60.00477 * 3 2 1 29 29 H 1.09001 * 109.46954 * 300.00292 * 3 2 1 30 30 H 1.09000 * 109.46616 * 174.73530 * 4 3 2 31 31 H 1.08999 * 109.46999 * 60.00094 * 8 6 5 32 32 H 1.09000 * 109.46974 * 299.99586 * 8 6 5 33 33 H 1.08003 * 119.99726 * 0.02562 * 10 9 8 34 34 H 1.07998 * 119.99932 * 179.74037 * 11 10 9 35 35 H 1.09009 * 109.47055 * 59.99905 * 14 13 12 36 36 H 1.08999 * 109.47075 * 179.97438 * 14 13 12 37 37 H 1.09003 * 109.47386 * 300.00261 * 14 13 12 38 38 H 1.08998 * 109.47348 * 60.00029 * 15 13 12 39 39 H 1.09005 * 109.46727 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.46649 * 299.99525 * 15 13 12 41 41 H 1.08999 * 109.47329 * 59.99773 * 16 13 12 42 42 H 1.08999 * 109.46864 * 180.02562 * 16 13 12 43 43 H 1.09000 * 109.46746 * 299.99911 * 16 13 12 44 44 H 1.07998 * 120.00146 * 180.02562 * 17 12 11 45 45 H 1.07998 * 119.99797 * 179.97438 * 18 17 12 46 46 H 0.97003 * 119.99620 * 5.18302 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9733 0.5751 1.2424 6 6 5.1848 0.9278 1.7004 7 8 5.8573 1.7191 1.0829 8 6 5.7060 0.3366 2.9849 9 6 7.0770 0.8918 3.2734 10 6 8.1996 0.2492 2.7860 11 6 9.4574 0.7553 3.0555 12 6 9.5921 1.9102 3.8032 13 14 11.2915 2.5984 4.1608 14 6 11.7768 3.7872 2.8110 15 6 11.2685 3.4910 5.7959 16 6 12.5241 1.2032 4.2322 17 6 8.4692 2.5560 4.2857 18 6 7.2116 2.0473 4.0202 19 6 3.9710 0.3274 -1.1610 20 7 4.1393 0.8516 -2.3160 21 14 4.2651 -1.5006 -0.9132 22 1 4.0026 -1.8565 0.5044 23 1 3.3524 -2.2727 -1.7942 24 1 5.6737 -1.8258 -1.2531 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.9784 2.1761 -0.0949 31 1 5.7664 -0.7474 2.8878 32 1 5.0312 0.5912 3.8022 33 1 8.0942 -0.6507 2.1981 34 1 10.3347 0.2509 2.6783 35 1 11.0556 4.6035 2.7692 36 1 12.7682 4.1891 3.0200 37 1 11.7902 3.2650 1.8543 38 1 10.9846 2.7955 6.5856 39 1 12.2600 3.8930 6.0043 40 1 10.5473 4.3073 5.7540 41 1 12.5376 0.6809 3.2756 42 1 13.5156 1.6048 4.4413 43 1 12.2402 0.5077 5.0220 44 1 8.5744 3.4585 4.8695 45 1 6.3344 2.5517 4.3976 46 1 4.0601 1.8118 -2.4290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857067295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:28 Heat of formation + Delta-G solvation = -110.847956 kcal Electronic energy + Delta-G solvation = -24968.707602 eV Core-core repulsion = 21368.357148 eV Total energy + Delta-G solvation = -3600.350454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.94700 -40.05814 -39.17592 -37.71572 -36.53338 -33.92826 -31.82345 -31.50360 -29.54865 -28.64263 -28.29198 -28.28869 -27.26433 -25.14897 -23.44990 -23.38875 -21.84761 -21.50190 -19.10297 -18.49077 -17.95221 -17.32524 -17.21235 -16.61476 -16.38346 -16.18067 -15.90375 -15.75433 -15.30638 -14.41635 -14.29799 -14.24403 -14.02937 -13.93377 -13.80062 -13.76682 -13.49118 -13.36501 -13.23297 -13.15580 -13.10027 -13.08438 -12.97761 -12.78783 -12.73686 -12.63329 -12.28343 -11.96329 -11.86413 -11.68134 -11.50398 -10.90952 -10.76988 -10.75799 -10.75018 -10.32506 -9.74800 -9.57294 0.24571 0.57836 0.60603 0.98848 1.14735 1.44505 1.61726 1.73173 1.85874 1.87328 2.03637 2.11639 2.64167 2.67216 2.96880 3.35823 3.53993 3.66141 3.75556 3.91807 4.02928 4.17662 4.22948 4.32143 4.34016 4.52108 4.53699 4.55437 4.56470 4.61825 4.75956 4.81436 4.82502 4.88078 4.88991 4.90085 4.90306 4.90796 5.06689 5.20909 5.22516 5.46287 5.57282 5.59771 5.64644 5.65770 5.71736 6.05387 6.19167 6.54457 6.65993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.073 3.927 4 C 0.065 3.935 5 O -0.333 6.333 6 C 0.458 3.542 7 O -0.527 6.527 8 C -0.074 4.074 9 C -0.085 4.085 10 C -0.133 4.133 11 C -0.104 4.104 12 C -0.381 4.381 13 Si 1.121 2.879 14 C -0.466 4.466 15 C -0.458 4.458 16 C -0.459 4.459 17 C -0.103 4.103 18 C -0.129 4.129 19 C -0.036 4.036 20 N -0.635 5.635 21 Si 1.067 2.933 22 H -0.219 1.219 23 H -0.250 1.250 24 H -0.266 1.266 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 -0.117 4.470 5.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C -0.004 4.004 4 C 0.007 3.993 5 O -0.248 6.248 6 C 0.302 3.698 7 O -0.415 6.415 8 C -0.111 4.111 9 C -0.085 4.085 10 C -0.151 4.151 11 C -0.121 4.121 12 C -0.420 4.420 13 Si 1.309 2.691 14 C -0.572 4.572 15 C -0.565 4.565 16 C -0.566 4.566 17 C -0.121 4.121 18 C -0.147 4.147 19 C -0.281 4.281 20 N -0.248 5.248 21 Si 0.881 3.119 22 H -0.141 1.141 23 H -0.174 1.174 24 H -0.191 1.191 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.154 0.846 45 H 0.147 0.853 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.703 -1.259 3.391 3.998 hybrid contribution -0.769 2.034 -0.051 2.175 sum -2.471 0.775 3.340 4.226 Atomic orbital electron populations 1.22960 0.78938 1.04169 1.01022 1.87854 1.21664 1.26890 1.95612 1.22597 0.88157 0.86384 1.03297 1.23178 0.95806 0.97904 0.82428 1.86712 1.34545 1.64539 1.39040 1.24349 0.79085 0.78924 0.87429 1.90702 1.57865 1.33859 1.59079 1.20545 0.94471 1.03603 0.92497 1.19475 0.93699 0.96426 0.98904 1.21373 0.93109 1.00783 0.99846 1.21346 0.97300 0.96222 0.97273 1.27954 1.14664 0.99373 1.00051 0.77239 0.60863 0.65227 0.65779 1.26339 1.05688 1.11520 1.13624 1.26222 1.04856 1.08337 1.17117 1.26239 1.11861 1.13889 1.04661 1.21354 0.92383 0.99728 0.98622 1.21348 0.98651 0.95604 0.99126 1.32341 0.91920 1.12993 0.90845 1.69438 1.11213 1.20230 1.23919 0.83496 0.79350 0.66926 0.82171 1.14112 1.17403 1.19065 0.92583 0.93321 0.88444 0.89653 0.89910 0.87450 0.84339 0.83914 0.85490 0.84743 0.91725 0.90592 0.91818 0.91003 0.90629 0.91022 0.91123 0.90632 0.91022 0.84604 0.85252 0.85132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 11.01 113.37 1.25 1.15 16 2 O -0.40 -0.58 9.14 -145.82 -1.33 -1.91 16 3 C 0.07 -0.10 5.81 71.98 0.42 0.32 16 4 C 0.06 0.17 2.54 29.85 0.08 0.24 16 5 O -0.33 -0.99 8.10 -48.86 -0.40 -1.39 16 6 C 0.46 1.88 7.79 71.24 0.55 2.44 16 7 O -0.53 -5.70 15.25 21.98 0.34 -5.37 16 8 C -0.07 0.12 5.94 29.10 0.17 0.30 16 9 C -0.08 -0.25 4.37 -19.87 -0.09 -0.34 16 10 C -0.13 -0.49 9.70 22.27 0.22 -0.28 16 11 C -0.10 -0.28 9.29 22.27 0.21 -0.08 16 12 C -0.38 -0.53 4.59 22.27 0.10 -0.42 16 13 Si 1.12 -4.46 12.32 68.60 0.85 -3.62 16 14 C -0.47 0.42 8.65 113.37 0.98 1.40 16 15 C -0.46 1.60 8.53 113.37 0.97 2.57 16 16 C -0.46 1.45 8.53 113.37 0.97 2.42 16 17 C -0.10 -0.22 9.29 22.27 0.21 -0.01 16 18 C -0.13 -0.37 9.70 22.27 0.22 -0.15 16 19 C -0.04 -0.20 4.74 88.67 0.42 0.22 16 20 N -0.63 -4.47 13.48 24.11 0.32 -4.14 16 21 Si 1.07 5.30 27.59 68.60 1.89 7.19 16 22 H -0.22 -0.49 6.92 99.48 0.69 0.20 16 23 H -0.25 -1.48 7.11 99.48 0.71 -0.77 16 24 H -0.27 -1.73 7.11 99.48 0.71 -1.02 16 25 H 0.06 -0.33 8.14 -2.39 -0.02 -0.35 16 26 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 29 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.11 0.29 7.15 -2.39 -0.02 0.27 16 31 H 0.14 -0.82 8.09 -2.39 -0.02 -0.84 16 32 H 0.14 -0.98 8.09 -2.39 -0.02 -1.00 16 33 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 34 H 0.13 -0.15 7.43 -2.91 -0.02 -0.18 16 35 H 0.06 0.01 7.96 -2.38 -0.02 -0.01 16 36 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 37 H 0.06 0.03 7.96 -2.39 -0.02 0.01 16 38 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 39 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 40 H 0.07 -0.26 7.69 -2.39 -0.02 -0.28 16 41 H 0.07 -0.22 7.69 -2.39 -0.02 -0.24 16 42 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 43 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 44 H 0.14 -0.28 7.43 -2.91 -0.02 -0.30 16 45 H 0.13 -0.09 8.06 -2.91 -0.02 -0.12 16 46 H 0.33 1.27 8.73 -92.71 -0.81 0.46 16 Total: 0.00 -15.58 392.38 9.22 -6.36 By element: Atomic # 1 Polarization: -7.78 SS G_CDS: 0.88 Total: -6.90 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 6.67 Total: 9.77 kcal Atomic # 7 Polarization: -4.47 SS G_CDS: 0.32 Total: -4.14 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -1.39 Total: -8.67 kcal Atomic # 14 Polarization: 0.83 SS G_CDS: 2.74 Total: 3.57 kcal Total: -15.58 9.22 -6.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857067295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.490 kcal (2) G-P(sol) polarization free energy of solvation -15.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds