Wall clock time and date at job start Tue Mar 31 2020 13:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86795 * 119.99973 * 2 1 4 4 H 1.48509 * 109.46806 * 270.00152 * 3 2 1 5 5 H 1.48498 * 109.47480 * 29.99499 * 3 2 1 6 6 H 1.48494 * 109.47097 * 150.00063 * 3 2 1 7 7 C 1.40271 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00154 * 191.17818 * 7 2 1 9 9 C 1.40889 * 120.00176 * 11.18129 * 7 2 1 10 10 C 1.40714 * 120.32934 * 29.01735 * 9 7 2 11 11 C 1.37587 * 119.88261 * 179.97438 * 10 9 7 12 12 C 1.38830 * 120.57296 * 0.02562 * 11 10 9 13 13 C 1.38210 * 120.67220 * 0.02562 * 12 11 10 14 14 C 1.39228 * 120.09737 * 359.97438 * 13 12 11 15 15 C 1.47432 * 120.28283 * 179.97438 * 14 13 12 16 16 O 1.21612 * 119.99619 * 227.68677 * 15 14 13 17 17 N 1.34769 * 120.00165 * 47.68951 * 15 14 13 18 18 C 1.47026 * 125.64857 * 355.59460 * 17 15 14 19 19 C 1.54320 * 107.27116 * 178.90437 * 18 17 15 20 20 C 1.55160 * 102.94335 * 337.80258 * 19 18 17 21 21 H 1.08997 * 111.00786 * 277.42880 * 20 19 18 22 22 C 1.50701 * 111.00695 * 153.61700 * 20 19 18 23 23 C 1.38233 * 119.61743 * 323.44072 * 22 20 19 24 24 C 1.38625 * 119.16333 * 179.97438 * 23 22 20 25 25 C 1.38674 * 118.42035 * 359.97438 * 24 23 22 26 26 C 1.38186 * 119.16152 * 0.02562 * 25 24 23 27 27 N 1.31851 * 119.62016 * 143.16436 * 22 20 19 28 28 C 1.47432 * 125.64880 * 175.28187 * 17 15 14 29 29 H 0.96997 * 119.99885 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.05328 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.71411 * 180.27662 * 11 10 9 32 32 H 1.08004 * 119.66069 * 179.97438 * 12 11 10 33 33 H 1.08004 * 119.95408 * 179.97438 * 13 12 11 34 34 H 1.09000 * 109.88044 * 298.31882 * 18 17 15 35 35 H 1.08999 * 109.88227 * 59.48446 * 18 17 15 36 36 H 1.09005 * 110.72737 * 96.16567 * 19 18 17 37 37 H 1.09008 * 110.72126 * 219.44156 * 19 18 17 38 38 H 1.08009 * 120.41693 * 359.97438 * 23 22 20 39 39 H 1.07995 * 120.78916 * 179.97438 * 24 23 22 40 40 H 1.07993 * 120.42081 * 180.02562 * 25 24 23 41 41 H 1.08002 * 119.61425 * 180.02562 * 26 25 24 42 42 H 1.09000 * 110.36736 * 323.00185 * 28 17 15 43 43 H 1.08995 * 110.36633 * 85.32955 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0464 -1.4002 5 1 1.4378 2.6527 0.6999 6 1 3.5378 1.4401 0.7000 7 6 2.0077 -1.2148 0.0005 8 1 3.0723 -1.2236 0.1819 9 6 1.3233 -2.4235 -0.2355 10 6 0.1660 -2.4401 -1.0358 11 6 -0.4948 -3.6258 -1.2607 12 6 -0.0304 -4.8097 -0.7040 13 6 1.1033 -4.8200 0.0865 14 6 1.7938 -3.6363 0.3324 15 6 3.0032 -3.6425 1.1755 16 8 3.1303 -2.8201 2.0624 17 7 3.9679 -4.5594 0.9634 18 6 3.9038 -5.6616 -0.0075 19 6 5.2392 -6.4298 0.0827 20 6 6.2033 -5.3800 0.6956 21 1 6.5927 -4.7116 -0.0724 22 6 7.3265 -6.0501 1.4442 23 6 7.0770 -7.2075 2.1578 24 6 8.1172 -7.8164 2.8425 25 6 9.3754 -7.2363 2.7833 26 6 9.5491 -6.0784 2.0493 27 7 8.5370 -5.5289 1.4065 28 6 5.2648 -4.6194 1.6619 29 1 -0.4850 0.8400 -0.0004 30 1 -0.2023 -1.5240 -1.4733 31 1 -1.3803 -3.6362 -1.8791 32 1 -0.5609 -5.7320 -0.8899 33 1 1.4541 -5.7477 0.5142 34 1 3.0763 -6.3263 0.2404 35 1 3.7729 -5.2624 -1.0133 36 1 5.1431 -7.2947 0.7391 37 1 5.5779 -6.7322 -0.9083 38 1 6.0841 -7.6319 2.1815 39 1 7.9517 -8.7211 3.4086 40 1 10.2089 -7.6837 3.3041 41 1 10.5260 -5.6206 1.9979 42 1 5.6434 -3.6140 1.8462 43 1 5.1657 -5.1662 2.5995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868031891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:38 Heat of formation + Delta-G solvation = 25.981808 kcal Electronic energy + Delta-G solvation = -26199.154780 eV Core-core repulsion = 22594.788673 eV Total energy + Delta-G solvation = -3604.366107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.64510 -39.29974 -37.45801 -36.32267 -33.76791 -32.95291 -32.56070 -30.28917 -29.84287 -29.57669 -28.26228 -25.54499 -24.24750 -23.86576 -22.75689 -21.37974 -20.99134 -20.42200 -18.77643 -17.28347 -17.25341 -16.74743 -16.26744 -15.67210 -15.37880 -15.11493 -14.84377 -14.44038 -14.13700 -13.93640 -13.42641 -13.34411 -13.24970 -12.94683 -12.93468 -12.59229 -12.18561 -12.02216 -11.77256 -11.59892 -11.37920 -11.30468 -11.16887 -11.03870 -10.81758 -10.67964 -10.47249 -10.08015 -9.91342 -9.63982 -9.59376 -9.26839 -9.15284 -8.69563 -8.04670 -7.53976 -7.43504 -6.79684 -4.42003 0.88216 1.07638 2.49553 2.82279 3.09013 3.15216 3.23292 3.49881 3.60318 3.93789 3.95831 4.10137 4.44409 4.61334 4.62223 4.72994 4.80142 4.86394 4.92881 5.01269 5.35499 5.42265 5.46247 5.58690 5.61166 5.73455 5.75980 5.83487 5.93459 5.97319 6.10263 6.11292 6.21833 6.25852 6.35698 6.48075 6.54813 6.92393 6.99586 7.12255 7.23394 7.46305 7.68528 7.82757 7.90239 7.98073 8.15165 8.27570 8.56727 8.79311 8.86204 9.22776 10.13539 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015895 B = 0.003377 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.140345 B = 8288.446336 C = 9633.654080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.428 4.428 8 H 0.081 0.919 9 C 0.146 3.854 10 C -0.155 4.155 11 C -0.095 4.095 12 C -0.247 4.247 13 C -0.061 4.061 14 C -0.252 4.252 15 C 0.597 3.403 16 O -0.535 6.535 17 N -0.628 5.628 18 C 0.107 3.893 19 C -0.126 4.126 20 C -0.057 4.057 21 H 0.104 0.896 22 C 0.150 3.850 23 C -0.168 4.168 24 C -0.074 4.074 25 C -0.182 4.182 26 C 0.101 3.899 27 N -0.481 5.481 28 C 0.124 3.876 29 H 0.283 0.717 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.155 0.845 42 H 0.078 0.922 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.033 -13.765 0.908 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.457 4.457 8 H 0.099 0.901 9 C 0.142 3.858 10 C -0.174 4.174 11 C -0.113 4.113 12 C -0.266 4.266 13 C -0.079 4.079 14 C -0.256 4.256 15 C 0.391 3.609 16 O -0.411 6.411 17 N -0.365 5.365 18 C -0.016 4.016 19 C -0.165 4.165 20 C -0.077 4.077 21 H 0.122 0.878 22 C 0.012 3.988 23 C -0.188 4.188 24 C -0.100 4.100 25 C -0.202 4.202 26 C -0.056 4.056 27 N -0.189 5.189 28 C 0.000 4.000 29 H 0.094 0.906 30 H 0.141 0.859 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.172 0.828 42 H 0.096 0.904 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.958 -12.297 0.952 17.889 hybrid contribution 0.212 -0.203 0.623 0.688 sum 13.170 -12.500 1.574 18.225 Atomic orbital electron populations 1.69705 1.07671 1.29541 1.34380 1.25989 0.94816 1.01580 0.91988 0.86204 0.80790 0.80016 0.79233 1.19189 1.20084 1.18290 1.19641 0.96498 0.90261 1.39290 0.90127 1.17380 0.90535 0.90683 0.87153 1.21375 0.98190 0.96782 1.01074 1.20795 0.98144 0.93401 0.99006 1.20258 1.01009 0.96842 1.08521 1.20647 0.95502 0.95080 0.96710 1.19350 1.00656 0.95555 1.10062 1.18251 0.81908 0.77842 0.82928 1.90707 1.79214 1.38241 1.32899 1.48567 1.16711 1.30666 1.40589 1.22016 0.96682 0.88784 0.94142 1.22871 0.94188 0.97473 1.01932 1.21236 0.91397 0.97319 0.97724 0.87770 1.20946 0.91941 0.91817 0.94144 1.22037 1.00686 0.97173 0.98876 1.21591 0.92674 0.99158 0.96557 1.22134 0.98278 0.98070 1.01686 1.22766 0.97739 0.92645 0.92440 1.67507 0.99679 1.32369 1.19381 1.21930 0.83211 1.00723 0.94140 0.90612 0.85919 0.89151 0.89172 0.88919 0.91171 0.91005 0.90321 0.89784 0.84384 0.84846 0.84917 0.82771 0.90375 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.58 10.88 55.56 0.60 -19.98 16 2 C 0.08 1.94 5.25 -17.30 -0.09 1.85 16 3 Si 0.91 19.66 29.58 -169.99 -5.03 14.63 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.26 -5.73 7.11 56.52 0.40 -5.32 16 7 C -0.43 -11.83 7.86 -37.82 -0.30 -12.12 16 8 H 0.08 2.28 7.00 -52.49 -0.37 1.91 16 9 C 0.15 3.94 5.57 -106.54 -0.59 3.35 16 10 C -0.15 -3.95 8.65 -38.88 -0.34 -4.29 16 11 C -0.09 -2.14 10.01 -39.60 -0.40 -2.54 16 12 C -0.25 -5.26 10.03 -39.37 -0.39 -5.66 16 13 C -0.06 -1.31 8.51 -39.22 -0.33 -1.65 16 14 C -0.25 -6.20 5.45 -104.37 -0.57 -6.77 16 15 C 0.60 14.27 6.72 -12.52 -0.08 14.18 16 16 O -0.53 -14.73 16.02 5.27 0.08 -14.64 16 17 N -0.63 -11.68 3.33 -171.92 -0.57 -12.26 16 18 C 0.11 1.55 5.66 -3.06 -0.02 1.53 16 19 C -0.13 -1.37 6.27 -24.90 -0.16 -1.53 16 20 C -0.06 -0.73 3.39 -89.74 -0.30 -1.03 16 21 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 22 C 0.15 1.80 5.89 -82.59 -0.49 1.31 16 23 C -0.17 -1.66 8.98 -39.44 -0.35 -2.01 16 24 C -0.07 -0.61 10.18 -39.28 -0.40 -1.01 16 25 C -0.18 -1.46 10.11 -39.44 -0.40 -1.86 16 26 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 27 N -0.48 -6.11 10.27 -9.47 -0.10 -6.21 16 28 C 0.12 1.98 6.34 -2.64 -0.02 1.96 16 29 H 0.28 6.69 8.29 -40.82 -0.34 6.35 16 30 H 0.12 3.20 6.26 -52.49 -0.33 2.87 16 31 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 32 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.09 1.73 5.97 -52.48 -0.31 1.41 16 34 H 0.07 0.96 6.00 -51.93 -0.31 0.65 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 0.71 5.83 -51.93 -0.30 0.41 16 37 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.14 1.16 6.28 -52.48 -0.33 0.83 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 42 H 0.08 1.40 8.08 -51.93 -0.42 0.98 16 43 H 0.06 0.90 7.89 -51.93 -0.41 0.49 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -32.17 353.76 -10.40 -42.57 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.30 Total: 6.05 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -5.43 Total: -15.49 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.06 Total: -38.44 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.08 Total: -14.64 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.17 -10.40 -42.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868031891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.555 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds