Wall clock time and date at job start Tue Mar 31 2020 13:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86795 * 119.99973 * 2 1 4 4 H 1.48509 * 109.46806 * 270.00152 * 3 2 1 5 5 H 1.48498 * 109.47480 * 29.99499 * 3 2 1 6 6 H 1.48494 * 109.47097 * 150.00063 * 3 2 1 7 7 C 1.40271 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00154 * 191.17818 * 7 2 1 9 9 C 1.40889 * 120.00176 * 11.18129 * 7 2 1 10 10 C 1.40714 * 120.32934 * 29.01735 * 9 7 2 11 11 C 1.37587 * 119.88261 * 179.97438 * 10 9 7 12 12 C 1.38830 * 120.57296 * 0.02562 * 11 10 9 13 13 C 1.38210 * 120.67220 * 0.02562 * 12 11 10 14 14 C 1.39228 * 120.09737 * 359.97438 * 13 12 11 15 15 C 1.47432 * 120.28283 * 179.97438 * 14 13 12 16 16 O 1.21612 * 119.99619 * 227.68677 * 15 14 13 17 17 N 1.34769 * 120.00165 * 47.68951 * 15 14 13 18 18 C 1.47026 * 125.64857 * 355.59460 * 17 15 14 19 19 C 1.54320 * 107.27116 * 178.90437 * 18 17 15 20 20 C 1.55160 * 102.94335 * 337.80258 * 19 18 17 21 21 H 1.08997 * 111.00786 * 277.42880 * 20 19 18 22 22 C 1.50701 * 111.00695 * 153.61700 * 20 19 18 23 23 C 1.38233 * 119.61743 * 323.44072 * 22 20 19 24 24 C 1.38625 * 119.16333 * 179.97438 * 23 22 20 25 25 C 1.38674 * 118.42035 * 359.97438 * 24 23 22 26 26 C 1.38186 * 119.16152 * 0.02562 * 25 24 23 27 27 N 1.31851 * 119.62016 * 143.16436 * 22 20 19 28 28 C 1.47432 * 125.64880 * 175.28187 * 17 15 14 29 29 H 0.96997 * 119.99885 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.05328 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.71411 * 180.27662 * 11 10 9 32 32 H 1.08004 * 119.66069 * 179.97438 * 12 11 10 33 33 H 1.08004 * 119.95408 * 179.97438 * 13 12 11 34 34 H 1.09000 * 109.88044 * 298.31882 * 18 17 15 35 35 H 1.08999 * 109.88227 * 59.48446 * 18 17 15 36 36 H 1.09005 * 110.72737 * 96.16567 * 19 18 17 37 37 H 1.09008 * 110.72126 * 219.44156 * 19 18 17 38 38 H 1.08009 * 120.41693 * 359.97438 * 23 22 20 39 39 H 1.07995 * 120.78916 * 179.97438 * 24 23 22 40 40 H 1.07993 * 120.42081 * 180.02562 * 25 24 23 41 41 H 1.08002 * 119.61425 * 180.02562 * 26 25 24 42 42 H 1.09000 * 110.36736 * 323.00185 * 28 17 15 43 43 H 1.08995 * 110.36633 * 85.32955 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0464 -1.4002 5 1 1.4378 2.6527 0.6999 6 1 3.5378 1.4401 0.7000 7 6 2.0077 -1.2148 0.0005 8 1 3.0723 -1.2236 0.1819 9 6 1.3233 -2.4235 -0.2355 10 6 0.1660 -2.4401 -1.0358 11 6 -0.4948 -3.6258 -1.2607 12 6 -0.0304 -4.8097 -0.7040 13 6 1.1033 -4.8200 0.0865 14 6 1.7938 -3.6363 0.3324 15 6 3.0032 -3.6425 1.1755 16 8 3.1303 -2.8201 2.0624 17 7 3.9679 -4.5594 0.9634 18 6 3.9038 -5.6616 -0.0075 19 6 5.2392 -6.4298 0.0827 20 6 6.2033 -5.3800 0.6956 21 1 6.5927 -4.7116 -0.0724 22 6 7.3265 -6.0501 1.4442 23 6 7.0770 -7.2075 2.1578 24 6 8.1172 -7.8164 2.8425 25 6 9.3754 -7.2363 2.7833 26 6 9.5491 -6.0784 2.0493 27 7 8.5370 -5.5289 1.4065 28 6 5.2648 -4.6194 1.6619 29 1 -0.4850 0.8400 -0.0004 30 1 -0.2023 -1.5240 -1.4733 31 1 -1.3803 -3.6362 -1.8791 32 1 -0.5609 -5.7320 -0.8899 33 1 1.4541 -5.7477 0.5142 34 1 3.0763 -6.3263 0.2404 35 1 3.7729 -5.2624 -1.0133 36 1 5.1431 -7.2947 0.7391 37 1 5.5779 -6.7322 -0.9083 38 1 6.0841 -7.6319 2.1815 39 1 7.9517 -8.7211 3.4086 40 1 10.2089 -7.6837 3.3041 41 1 10.5260 -5.6206 1.9979 42 1 5.6434 -3.6140 1.8462 43 1 5.1657 -5.1662 2.5995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868031891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:37 Heat of formation + Delta-G solvation = 7.194819 kcal Electronic energy + Delta-G solvation = -26199.969445 eV Core-core repulsion = 22594.788673 eV Total energy + Delta-G solvation = -3605.180772 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.59296 -40.74910 -39.02850 -38.04302 -35.65034 -34.07792 -33.36299 -31.94489 -31.47865 -30.92728 -29.48911 -27.40468 -25.61883 -24.63001 -23.83942 -22.92816 -22.78222 -21.46425 -20.41859 -19.14650 -18.18672 -18.07063 -17.35400 -17.22620 -16.62626 -16.53987 -16.10620 -16.03239 -15.52842 -15.08941 -14.68653 -14.60306 -14.47266 -14.37155 -14.27055 -13.90341 -13.79769 -13.50473 -13.39092 -13.00713 -12.85732 -12.66364 -12.65506 -12.40981 -12.31916 -12.24098 -11.84329 -11.69054 -11.43435 -11.15110 -10.79516 -10.59523 -10.34917 -9.88690 -9.63708 -9.35349 -9.32093 -8.70053 -6.42407 0.15623 0.39670 0.63557 1.00968 1.29368 1.42090 1.47119 1.95812 2.16258 2.22938 2.70466 2.80561 3.23097 3.50330 3.63027 3.67423 3.94859 4.00642 4.12662 4.14484 4.18435 4.25481 4.29820 4.41326 4.44709 4.61390 4.63364 4.72289 4.81156 4.85581 4.86764 4.91278 5.02026 5.07128 5.15932 5.23341 5.29756 5.32708 5.34527 5.48494 5.59571 5.81768 5.85987 6.00481 6.11008 6.28367 6.53759 6.67173 6.85246 6.93472 7.08490 7.42717 8.25487 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015895 B = 0.003377 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.140345 B = 8288.446336 C = 9633.654080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.036 3.964 3 Si 0.976 3.024 4 H -0.249 1.249 5 H -0.260 1.260 6 H -0.276 1.276 7 C -0.469 4.469 8 H 0.053 0.947 9 C 0.114 3.886 10 C -0.181 4.181 11 C -0.093 4.093 12 C -0.232 4.232 13 C -0.057 4.057 14 C -0.267 4.267 15 C 0.589 3.411 16 O -0.589 6.589 17 N -0.623 5.623 18 C 0.099 3.901 19 C -0.108 4.108 20 C -0.045 4.045 21 H 0.085 0.915 22 C 0.125 3.875 23 C -0.170 4.170 24 C -0.074 4.074 25 C -0.172 4.172 26 C 0.083 3.917 27 N -0.520 5.520 28 C 0.122 3.878 29 H 0.291 0.709 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.155 0.845 39 H 0.167 0.833 40 H 0.166 0.834 41 H 0.173 0.827 42 H 0.044 0.956 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.594 -17.568 0.894 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.179 4.179 3 Si 0.797 3.203 4 H -0.173 1.173 5 H -0.184 1.184 6 H -0.201 1.201 7 C -0.499 4.499 8 H 0.071 0.929 9 C 0.111 3.889 10 C -0.201 4.201 11 C -0.111 4.111 12 C -0.251 4.251 13 C -0.076 4.076 14 C -0.271 4.271 15 C 0.382 3.618 16 O -0.470 6.470 17 N -0.358 5.358 18 C -0.023 4.023 19 C -0.146 4.146 20 C -0.065 4.065 21 H 0.103 0.897 22 C -0.012 4.012 23 C -0.190 4.190 24 C -0.099 4.099 25 C -0.191 4.191 26 C -0.073 4.073 27 N -0.229 5.229 28 C -0.001 4.001 29 H 0.102 0.898 30 H 0.125 0.875 31 H 0.139 0.861 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.173 0.827 39 H 0.184 0.816 40 H 0.183 0.817 41 H 0.190 0.810 42 H 0.062 0.938 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.529 -16.160 0.895 21.094 hybrid contribution 0.100 0.737 0.660 0.994 sum 13.629 -15.423 1.556 20.641 Atomic orbital electron populations 1.69726 1.08497 1.30685 1.35391 1.26685 0.95692 1.04174 0.91369 0.85301 0.78651 0.76370 0.79974 1.17320 1.18361 1.20130 1.19605 0.95513 0.92160 1.42581 0.92867 1.17738 0.91599 0.91497 0.88110 1.21332 0.98875 0.97667 1.02214 1.21175 0.98511 0.92796 0.98617 1.20778 1.00186 0.97885 1.06277 1.21016 0.95083 0.95266 0.96192 1.19663 1.01476 0.96193 1.09805 1.18297 0.82885 0.78224 0.82381 1.90657 1.80497 1.40632 1.35223 1.48477 1.16263 1.30224 1.40800 1.22324 0.99677 0.87829 0.92478 1.22872 0.90960 0.96986 1.03786 1.21029 0.91646 0.97376 0.96468 0.89665 1.20788 0.91494 0.93125 0.95817 1.22229 1.02059 0.96313 0.98366 1.22032 0.92117 0.99900 0.95888 1.22524 0.99410 0.96911 1.00297 1.23200 0.97859 0.93641 0.92627 1.67406 1.00687 1.33834 1.20994 1.22040 0.82724 0.99739 0.95629 0.89803 0.87516 0.86134 0.84814 0.85314 0.89421 0.91975 0.87430 0.87476 0.82734 0.81586 0.81673 0.81011 0.93756 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.64 10.88 21.88 0.24 -44.40 16 2 C 0.04 1.98 5.25 85.36 0.45 2.43 16 3 Si 0.98 42.51 29.58 68.60 2.03 44.54 16 4 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.47 -27.86 7.86 23.41 0.18 -27.68 16 8 H 0.05 3.31 7.00 -2.91 -0.02 3.29 16 9 C 0.11 6.44 5.57 -21.11 -0.12 6.32 16 10 C -0.18 -9.52 8.65 22.72 0.20 -9.32 16 11 C -0.09 -4.05 10.01 22.26 0.22 -3.83 16 12 C -0.23 -9.13 10.03 22.40 0.22 -8.91 16 13 C -0.06 -2.36 8.51 22.50 0.19 -2.17 16 14 C -0.27 -13.49 5.45 -19.70 -0.11 -13.59 16 15 C 0.59 29.47 6.72 86.67 0.58 30.06 16 16 O -0.59 -34.83 16.02 -4.07 -0.07 -34.90 16 17 N -0.62 -23.67 3.33 -816.08 -2.72 -26.39 16 18 C 0.10 2.70 5.66 86.73 0.49 3.19 16 19 C -0.11 -2.07 6.27 31.78 0.20 -1.87 16 20 C -0.05 -1.15 3.39 -10.22 -0.03 -1.18 16 21 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 22 C 0.13 2.88 5.89 42.55 0.25 3.13 16 23 C -0.17 -2.86 8.98 22.36 0.20 -2.66 16 24 C -0.07 -0.93 10.18 22.47 0.23 -0.71 16 25 C -0.17 -2.20 10.11 22.36 0.23 -1.97 16 26 C 0.08 1.51 11.18 84.67 0.95 2.45 16 27 N -0.52 -13.05 10.27 -183.88 -1.89 -14.94 16 28 C 0.12 4.05 6.34 86.78 0.55 4.60 16 29 H 0.29 14.26 8.29 -92.71 -0.77 13.50 16 30 H 0.11 5.84 6.26 -2.91 -0.02 5.82 16 31 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 32 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 33 H 0.13 4.32 5.97 -2.91 -0.02 4.30 16 34 H 0.09 2.10 6.00 -2.39 -0.01 2.09 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.11 1.48 5.83 -2.38 -0.01 1.47 16 37 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.16 1.97 6.28 -2.91 -0.02 1.95 16 39 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 41 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.04 1.74 8.08 -2.39 -0.02 1.72 16 43 H 0.07 2.18 7.89 -2.39 -0.02 2.16 16 Total: -1.00 -77.48 353.76 3.52 -73.96 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 1.04 Total: 23.83 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 4.88 Total: -21.71 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -4.37 Total: -85.72 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.07 Total: -34.90 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -77.48 3.52 -73.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868031891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.156 kcal (2) G-P(sol) polarization free energy of solvation -77.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds