Wall clock time and date at job start Tue Mar 31 2020 13:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30623 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48495 * 109.46992 * 269.99556 * 3 2 1 5 5 H 1.48500 * 109.47000 * 30.00240 * 3 2 1 6 6 H 1.48501 * 109.47101 * 149.99944 * 3 2 1 7 7 C 1.40275 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00246 * 171.68175 * 7 2 1 9 9 C 1.40892 * 119.99844 * 351.69083 * 7 2 1 10 10 C 1.40705 * 120.32855 * 329.26989 * 9 7 2 11 11 C 1.37590 * 119.88367 * 179.97438 * 10 9 7 12 12 C 1.38830 * 120.56986 * 359.97438 * 11 10 9 13 13 C 1.38214 * 120.67616 * 0.02576 * 12 11 10 14 14 C 1.39230 * 120.09294 * 359.97438 * 13 12 11 15 15 C 1.47432 * 120.28144 * 179.97438 * 14 13 12 16 16 O 1.21610 * 119.99573 * 133.33412 * 15 14 13 17 17 N 1.34773 * 120.00240 * 313.33590 * 15 14 13 18 18 C 1.47027 * 125.64834 * 4.62008 * 17 15 14 19 19 C 1.54306 * 107.27475 * 180.97135 * 18 17 15 20 20 C 1.55153 * 102.86761 * 22.52463 * 19 18 17 21 21 H 1.08999 * 111.00611 * 82.37746 * 20 19 18 22 22 C 1.50706 * 111.03773 * 206.21608 * 20 19 18 23 23 C 1.38225 * 119.61598 * 78.40142 * 22 20 19 24 24 C 1.38636 * 119.15957 * 179.75445 * 23 22 20 25 25 C 1.38668 * 118.41747 * 0.50192 * 24 23 22 26 26 C 1.38190 * 119.16576 * 359.73451 * 25 24 23 27 27 N 1.31852 * 119.61776 * 258.66841 * 22 20 19 28 28 C 1.47417 * 125.65028 * 184.92920 * 17 15 14 29 29 H 0.97000 * 120.00076 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.05582 * 359.95940 * 10 9 7 31 31 H 1.08007 * 119.71848 * 180.02562 * 11 10 9 32 32 H 1.08005 * 119.65669 * 179.74432 * 12 11 10 33 33 H 1.07998 * 119.95359 * 179.97438 * 13 12 11 34 34 H 1.09000 * 109.88107 * 300.51764 * 18 17 15 35 35 H 1.08996 * 109.88168 * 61.67917 * 18 17 15 36 36 H 1.09005 * 110.92523 * 264.10869 * 19 18 17 37 37 H 1.09003 * 110.74780 * 140.85639 * 19 18 17 38 38 H 1.08001 * 120.42380 * 359.97231 * 23 22 20 39 39 H 1.07997 * 120.78945 * 180.21384 * 24 23 22 40 40 H 1.08002 * 120.42088 * 179.75285 * 25 24 23 41 41 H 1.07999 * 119.61781 * 179.97438 * 26 25 24 42 42 H 1.09003 * 110.37199 * 274.67317 * 28 17 15 43 43 H 1.09004 * 110.36892 * 36.99627 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4878 2.0463 -1.4000 5 1 1.4377 2.6526 0.7001 6 1 3.5378 1.4401 0.7001 7 6 2.0076 -1.2148 0.0005 8 1 3.0791 -1.2198 -0.1348 9 6 1.3142 -2.4285 0.1774 10 6 0.1429 -2.4706 0.9559 11 6 -0.5273 -3.6607 1.1221 12 6 -0.0584 -4.8242 0.5272 13 6 1.0897 -4.8095 -0.2422 14 6 1.7898 -3.6206 -0.4288 15 6 3.0153 -3.6003 -1.2483 16 8 3.1713 -2.7339 -2.0873 17 7 3.9625 -4.5418 -1.0675 18 6 3.8621 -5.6955 -0.1616 19 6 5.1872 -6.4788 -0.2687 20 6 6.1799 -5.4085 -0.7944 21 1 6.5581 -4.7923 0.0212 22 6 7.3130 -6.0484 -1.5545 23 6 7.1106 -6.4709 -2.8550 24 6 8.1610 -7.0537 -3.5471 25 6 9.3780 -7.1999 -2.8988 26 6 9.5042 -6.7580 -1.5956 27 7 8.4844 -6.2037 -0.9695 28 6 5.2735 -4.5819 -1.7405 29 1 -0.4850 0.8400 0.0004 30 1 -0.2293 -1.5704 1.4223 31 1 -1.4264 -3.6900 1.7199 32 1 -0.5938 -5.7511 0.6709 33 1 1.4443 -5.7215 -0.6992 34 1 3.7145 -5.3513 0.8620 35 1 3.0314 -6.3330 -0.4640 36 1 5.0967 -7.3020 -0.9775 37 1 5.4987 -6.8464 0.7091 38 1 6.1474 -6.3453 -3.3272 39 1 8.0330 -7.3900 -4.5654 40 1 10.2169 -7.6532 -3.4061 41 1 10.4487 -6.8687 -1.0836 42 1 5.1878 -5.0740 -2.7094 43 1 5.6697 -3.5735 -1.8600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868031893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:41 Heat of formation + Delta-G solvation = 26.949847 kcal Electronic energy + Delta-G solvation = -26206.688034 eV Core-core repulsion = 22602.363904 eV Total energy + Delta-G solvation = -3604.324130 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.64722 -39.31057 -37.45920 -36.32597 -33.75914 -32.95695 -32.52804 -30.34019 -29.91197 -29.58485 -28.15623 -25.55698 -24.43929 -23.59310 -22.83235 -21.38953 -20.99719 -20.42493 -18.80721 -17.27303 -17.24636 -16.74827 -16.28698 -15.68227 -15.39643 -15.08855 -14.84301 -14.34739 -14.19702 -13.85766 -13.58989 -13.41757 -13.10690 -12.96122 -12.85263 -12.59518 -12.18861 -12.06482 -11.87031 -11.62139 -11.36929 -11.23381 -11.12467 -11.04409 -10.83687 -10.70887 -10.48087 -10.06979 -9.92828 -9.64282 -9.60397 -9.27304 -9.12155 -8.71843 -8.05294 -7.54600 -7.41508 -6.77739 -4.42449 0.88903 1.08003 2.48159 2.82802 3.08571 3.14531 3.23033 3.50874 3.56658 3.92781 3.95764 4.10712 4.47807 4.61700 4.63290 4.69022 4.77944 4.89424 4.95576 5.05324 5.34331 5.40395 5.44525 5.58080 5.61680 5.74054 5.76186 5.87404 5.92190 5.97879 6.08916 6.10365 6.20394 6.26715 6.35419 6.48750 6.53889 6.90913 6.99540 7.11537 7.23333 7.46115 7.67500 7.81665 7.90041 7.97499 8.14410 8.26456 8.56516 8.79404 8.85926 9.21197 10.15348 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.003343 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.359703 B = 8372.858654 C = 9561.067932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.429 4.429 8 H 0.080 0.920 9 C 0.147 3.853 10 C -0.153 4.153 11 C -0.095 4.095 12 C -0.245 4.245 13 C -0.062 4.062 14 C -0.250 4.250 15 C 0.597 3.403 16 O -0.534 6.534 17 N -0.628 5.628 18 C 0.107 3.893 19 C -0.118 4.118 20 C -0.057 4.057 21 H 0.104 0.896 22 C 0.150 3.850 23 C -0.170 4.170 24 C -0.073 4.073 25 C -0.182 4.182 26 C 0.101 3.899 27 N -0.482 5.482 28 C 0.115 3.885 29 H 0.282 0.718 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.155 0.845 42 H 0.064 0.936 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.917 -12.910 -2.146 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.457 4.457 8 H 0.098 0.902 9 C 0.143 3.857 10 C -0.172 4.172 11 C -0.114 4.114 12 C -0.264 4.264 13 C -0.081 4.081 14 C -0.255 4.255 15 C 0.391 3.609 16 O -0.411 6.411 17 N -0.365 5.365 18 C -0.016 4.016 19 C -0.156 4.156 20 C -0.077 4.077 21 H 0.123 0.877 22 C 0.012 3.988 23 C -0.189 4.189 24 C -0.099 4.099 25 C -0.202 4.202 26 C -0.057 4.057 27 N -0.190 5.190 28 C -0.008 4.008 29 H 0.093 0.907 30 H 0.142 0.858 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.158 0.842 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.172 0.828 42 H 0.082 0.918 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.827 -11.894 -1.771 17.582 hybrid contribution 0.258 0.285 -1.028 1.098 sum 13.085 -11.609 -2.799 17.715 Atomic orbital electron populations 1.69686 1.07619 1.29467 1.34925 1.25969 0.94839 1.01522 0.92025 0.86191 0.80385 0.80024 0.79487 1.19207 1.20083 1.18425 1.19604 0.95801 0.90080 1.40255 0.90235 1.17387 0.90673 0.90683 0.86968 1.21396 0.97936 0.96659 1.01211 1.20810 0.98122 0.93510 0.98974 1.20275 1.00594 0.97147 1.08408 1.20678 0.95406 0.95061 0.96964 1.19379 1.00034 0.95961 1.10110 1.18249 0.82183 0.78349 0.82163 1.90705 1.79025 1.36419 1.34903 1.48550 1.16278 1.27008 1.44695 1.22039 0.96787 0.87548 0.95255 1.22705 0.93708 0.97015 1.02220 1.21258 0.91314 0.96902 0.98185 0.87738 1.20931 0.92247 0.94243 0.91398 1.22105 1.00776 1.00275 0.95776 1.21604 0.92678 0.95569 1.00012 1.22131 0.98667 1.02615 0.96807 1.22748 0.97220 0.93624 0.92069 1.67479 0.99697 1.13706 1.38158 1.22157 0.83427 1.00459 0.94788 0.90656 0.85838 0.89119 0.89144 0.88839 0.90952 0.91170 0.90765 0.89759 0.84248 0.84822 0.84934 0.82799 0.91776 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.65 10.85 55.56 0.60 -20.05 16 2 C 0.07 1.93 5.29 -17.30 -0.09 1.84 16 3 Si 0.91 19.68 29.57 -169.99 -5.03 14.65 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.43 -11.79 7.80 -37.81 -0.30 -12.09 16 8 H 0.08 2.23 7.04 -52.48 -0.37 1.86 16 9 C 0.15 3.94 5.56 -106.54 -0.59 3.34 16 10 C -0.15 -3.89 8.64 -38.89 -0.34 -4.23 16 11 C -0.10 -2.15 10.01 -39.60 -0.40 -2.55 16 12 C -0.24 -5.21 10.03 -39.37 -0.39 -5.60 16 13 C -0.06 -1.35 8.51 -39.22 -0.33 -1.68 16 14 C -0.25 -6.14 5.48 -104.37 -0.57 -6.71 16 15 C 0.60 14.09 6.76 -12.52 -0.08 14.00 16 16 O -0.53 -14.47 15.99 5.27 0.08 -14.39 16 17 N -0.63 -11.52 3.33 -171.79 -0.57 -12.09 16 18 C 0.11 1.56 5.62 -3.07 -0.02 1.55 16 19 C -0.12 -1.35 6.41 -24.91 -0.16 -1.51 16 20 C -0.06 -0.72 3.41 -89.62 -0.31 -1.03 16 21 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 22 C 0.15 1.80 5.89 -82.59 -0.49 1.31 16 23 C -0.17 -1.77 9.13 -39.44 -0.36 -2.13 16 24 C -0.07 -0.62 10.18 -39.28 -0.40 -1.02 16 25 C -0.18 -1.47 10.11 -39.44 -0.40 -1.87 16 26 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 27 N -0.48 -5.93 10.27 -9.47 -0.10 -6.03 16 28 C 0.12 1.77 6.18 -2.53 -0.02 1.75 16 29 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 30 H 0.12 3.22 6.28 -52.48 -0.33 2.89 16 31 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 32 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 33 H 0.09 1.74 5.86 -52.49 -0.31 1.43 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.98 5.95 -51.93 -0.31 0.67 16 36 H 0.07 0.76 8.00 -51.93 -0.42 0.35 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.14 1.35 6.11 -52.49 -0.32 1.03 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.06 0.89 5.72 -51.93 -0.30 0.59 16 43 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 LS Contribution 353.57 15.07 5.33 5.33 Total: -1.00 -31.73 353.57 -10.40 -42.13 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.29 Total: 6.29 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -5.44 Total: -15.86 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: -0.07 Total: -38.17 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.08 Total: -14.39 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.73 -10.40 -42.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868031893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.084 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds